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From "Bleeker, Troy C." <Bleeker.T...@mayo.edu>
Subject cTAKES 3.0 maven compile issue
Date Fri, 18 Jan 2013 17:33:54 GMT
On Windows and Eclipse my checkout gabbed everything necessary, compiled , and I could run
the GUIs.

On Ubuntu Linux I checked out OK, but I get this error at this time.

[INFO] Apache cTAKES ..................................... FAILURE [2.701s]
[INFO] Apache cTAKES common type system .................. SKIPPED
[INFO] Apache cTAKES utils ............................... SKIPPED
[INFO] Apache cTAKES core ................................ SKIPPED
[INFO] Apache cTAKES part-of-speech tagger ............... SKIPPED
[INFO] Apache cTAKES chunker ............................. SKIPPED
[INFO] Apache cTAKES document preprocessor ............... SKIPPED
[INFO] Apache cTAKES dictionary lookup ................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED
[INFO] Apache cTAKES LVG lexical tools ................... SKIPPED
[INFO] Apache cTAKES named entity contexts ............... SKIPPED
[INFO] Apache cTAKES Constituency Parser ................. SKIPPED
[INFO] Apache cTAKES Dependency Parser ................... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] Apache cTAKES Assertion ........................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] Apache cTAKES Relation Extractor .................. SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Pad Term Spotter .................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5.264s
[INFO] Finished at: Fri Jan 18 17:17:16 UTC 2013
[INFO] Final Memory: 11M/59M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-remote-resources-plugin:1.3:process
(default) on project ctakes: Error finding remote resources manifests: /vol1/cTAKES-3.0/target/maven-shared-archive-resources/META-INF/NOTICE
(No such file or directory) -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-remote-resources-plugin:1.3:process
(default) on project ctakes: Error finding remote resources manifests
        at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217)
        at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
        at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
        at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
        at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
        at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
        at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
        at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
        at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
        at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537)
        at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196)
        at org.apache.maven.cli.MavenCli.main(MavenCli.java:141)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:616)
        at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290)
        at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230)
        at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409)
        at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352)
Caused by: org.apache.maven.plugin.MojoExecutionException: Error finding remote resources
manifests
        at org.apache.maven.plugin.resources.remote.ProcessRemoteResourcesMojo.processResourceBundles(ProcessRemoteResourcesMojo.java:1220)
        at org.apache.maven.plugin.resources.remote.ProcessRemoteResourcesMojo.execute(ProcessRemoteResourcesMojo.java:518)
        at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
        at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
        ... 19 more
Caused by: java.io.FileNotFoundException: /vol1/cTAKES-3.0/target/maven-shared-archive-resources/META-INF/NOTICE
(No such file or directory)
        at java.io.FileOutputStream.open(Native Method)
        at java.io.FileOutputStream.<init>(FileOutputStream.java:209)
        at java.io.FileOutputStream.<init>(FileOutputStream.java:160)
        at java.io.FileWriter.<init>(FileWriter.java:90)
        at org.apache.maven.plugin.resources.remote.ProcessRemoteResourcesMojo.processResourceBundles(ProcessRemoteResourcesMojo.java:1128)

Thanks
Troy Bleeker * Senior Business Analyst CBAP(r) * Biomedical Statistics and Informatics
Phone: 507-293-1574 * Fax: 507-284-0360 * bleeker.troy@mayo.edu
Mayo Clinic * 200 First Street SW * Rochester, MN 55905 * www.mayoclinic.org


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