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From: "Chen, Pei" <Pei.Chen@childrens.harvard.edu>
To: "<ctakes-user@incubator.apache.org>" <ctakes-user@incubator.apache.org>
CC: "ctakes-user@incubator.apache.org" <ctakes-user@incubator.apache.org>,
        "ctakes-dev@incubator.apache.org" <ctakes-dev@incubator.apache.org>
Subject: Re: Regarding Assertion Tagger
Thread-Topic: Regarding Assertion Tagger
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Date: Thu, 15 Nov 2012 21:14:41 +0000
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Hi Sean,
What was the issue in 2.5?  Just want to make sure this is also fixed in th=
e upcoming 3.0 release coming out of ASF as well... Jira#?


On Nov 15, 2012, at 7:59 PM, "Murphy, Sean P." <Murphy.Sean@mayo.edu> wrote=
:

> I was able to see an issue with the 'PAD term spotter' which will most li=
kely be related to the problem you're seeing with the smoking status as wel=
l.    The problem seems to have  stemmed from the reorganization of the pat=
h structures with the latest cTAKES  release.  Due to time and resource con=
straints we were not able to test each project independently.  =20
>=20
> I will open a bug report against these problems and provide a fix as soon=
 as possible.  I will keep you posted, but I hope to have this resolved in =
a few days.
>    Thanks,
>        ~Sean
>=20
> -----Original Message-----
> From: ctakes-user-return-26-Murphy.Sean=3Dmayo.edu@incubator.apache.org [=
mailto:ctakes-user-return-26-Murphy.Sean=3Dmayo.edu@incubator.apache.org] O=
n Behalf Of Coarr, Matt
> Sent: Thursday, November 15, 2012 12:22 PM
> To: ctakes-dev@incubator.apache.org
> Cc: ctakes-user@incubator.apache.org
> Subject: Re: Regarding Assertion Tagger
>=20
> You were looking in the right place Deepal! The "cTAKES 2.5 Component Use=
 Guide" (the link at the bottom of your email) has a link to more informati=
on about the assertion module.
>=20
> Assertion module info:
>=20
>  https://wiki.nci.nih.gov/display/VKC/cTAKES+2.5+-+Assertion
>=20
> I'm not familiar with the peripheral artery disease spotter or the simula=
ted prod smoking tae.  So I'll let someone else chime in there.
>=20
> Matt
>=20
>=20
> On 2012-11-15 13:11 , "Deepal Dhariwal" <deepaldhariwal@gmail.com> wrote:
>=20
>> Hello Matt,
>>=20
>> Thanks for your reply. I am using cTAKES-2.5.0 Binary Version which I=20
>> have downloaded from=20
>> https://wiki.nci.nih.gov/display/VKC/cTAKES+2.5+User+Install+Instructio
>> ns
>> .
>> I have gone through the cTAKES documentation however no where was it=20
>> mentioned that polarity / uncertainty properties are on Entity Mention.=
=20
>> In order to avoid sending repeated mails to the mailing list could you=20
>> tell me if there is some other documentation as well ? I am trying to=20
>> use Peripheral Artery Disease Spotter , however it returns only=20
>> document annotation. Further even the SimulatedProdSmokingTAE Annotator=
=20
>> returns smoking status 'unknown' for every input. Is there some order=20
>> in which these annotator need to be executed (Reference :
>> https://wiki.nci.nih.gov/display/VKC/cTAKES+2.5+Component+Use+Guide )
>>=20
>> Thanks for clarifying the user list email id.
>>=20
>> Regards
>> Deepal Dhariwal
>>=20
>> On Thu, Nov 15, 2012 at 12:48 PM, Coarr, Matt <mcoarr@mitre.org> wrote:
>>=20
>>> FYI, the user list is ctakes-user (singular).  I've corrected the CC.
>>>=20
>>> The polarity/conditional/uncertainty properties are on EntityMention=20
>>> and EventMention.
>>>=20
>>> Are you using a current development copy of ctakes (from apache svn=20
>>> or from 3.0 RC2)?
>>>=20
>>> If not, what version of ctakes are you using?  Version number?=20
>>> Binary, source zip, or source from svn?
>>>=20
>>> Matt
>>>=20
>>>=20
>=20