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From: "Chen, Pei" <Pei.Chen@childrens.harvard.edu>
To: "ctakes-dev@incubator.apache.org" <ctakes-dev@incubator.apache.org>
Subject: RE: cTAKES resources and the classpath
Thread-Topic: cTAKES resources and the classpath
Thread-Index: Ac2g3wcy35FBrtrbScWtQbvXpHj90QAAz3RgAAjn9YAAXdFicAAqUn8AAAfIgHA=
Date: Fri, 5 Oct 2012 14:40:55 +0000
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I used=20
/ctakes/trunk/ctakes-clinical-pipeline/resources/launch/UIMA_CVD--clinical_=
documents_pipeline.launch
Not sure what the differences are, but some housekeeping is probably in ord=
er...

> -----Original Message-----
> From: Wu, Stephen T., Ph.D. [mailto:Wu.Stephen@mayo.edu]
> Sent: Friday, October 05, 2012 10:24 AM
> To: ctakes-dev@incubator.apache.org
> Subject: Re: cTAKES resources and the classpath
>=20
> Being new to maven (and maven in eclipse)... How do you run the default
> pipeline with CVD?  I've checked out, and tried going to
>   /ctakes/ctakes-clinical-pipeline/resources/launch/CVD cTAKES.launch but
> that doesn't work.
>=20
> stephen
>=20
>=20
> On 10/4/12 5:26 PM, "Chen, Pei" <Pei.Chen@childrens.harvard.edu> wrote:
>=20
> > The individual resources have been moved to src/main/resources so that
> > maven will automatically add it to the classpath and individual jar(s).
> > It was also an opportunity to add a fully qualified namespace such as
> > /org/apach/ctakes/{project}/somemodelsresourcedirectory.  This will be
> > important to avoid clashes if we decide to distribute some
> > uber-jar/war or move resources around again. [Even though the
> > resources were updated in the descriptor xml files, still haven't
> > decided to move those yet since it's working now and we may move to
> > uimaFIT style in the future.]
> >
> > I just tested the default clinical documents pipeline in trunk with
> > the CVD and it should be working now.
> > Feel free to check out and work off trunk in ASF SVN now: svn co
> > https://svn.apache.org/repos/asf/incubator/ctakes/trunk
> > (The OrangeBook will still require Lucene 3.0.2 so you might have to
> > update that from 3.5.0 if you plan to use the dictionary lookup)
> >
> > [Disclaimer: over ~5000-6000 files were touched since we updated java
> > namespaces, license headers, resource paths, etc. and wouldn't be
> > surprised if we missed something.  Feel free to let us know if you
> > encounter any issues or even better- open up a Jira and fix it :)]
> >
> > <-- Will get some coffee and start looking into some of the open Jira
> > issues now.  I think we should have a Release Candidate for
> > 3.0.0-incubating or a baseline within ASF very soon.
> >
> > --Pei
> >
> >> -----Original Message-----
> >> From: Steven Bethard [mailto:steven.bethard@Colorado.EDU]
> >> Sent: Tuesday, October 02, 2012 5:25 PM
> >> To: ctakes-dev@incubator.apache.org
> >> Subject: Re: cTAKES resources and the classpath
> >>
> >> Yeah, I'm going to commit a change to the dependency parser that
> >> allows me to do this. (Currently the location of the lemmatized data
> >> file is hard
> >> coded.)
> >>
> >> Steve
> >>
> >> On Oct 2, 2012, at 3:12 PM, "Chen, Pei"
> >> <Pei.Chen@childrens.harvard.edu>
> >> wrote:
> >>
> >>> Hi Steve,
> >>> I didn't get a chance to do this last week, but will work on it
> >>> tonight and
> >> tomorrow.
> >>> Don't want this to stop you though, so feel free to read in the
> >>> resource
> >> from an another location temporarily...
> >>> --Pei
> >>>
> >>>> -----Original Message-----
> >>>> From: Steven Bethard [mailto:steven.bethard@Colorado.EDU]
> >>>> Sent: Tuesday, October 02, 2012 4:47 PM
> >>>> To: ctakes-dev@incubator.apache.org
> >>>> Subject: cTAKES resources and the classpath
> >>>>
> >>>> On Sep 25, 2012, at 3:22 PM, "Chen, Pei"
> >>>> <Pei.Chen@childrens.harvard.edu>
> >>>> wrote:
> >>>>> I think Brandyn and others had a reasonable suggestion to use the
> >>>>> name
> >>>> instead of location paths in those pesky descriptor xml files-
> >>>> Assuming they're in the classpath (placed in src/main/resources).
> >>>>> I'll take a stab at this later this week if I get a chance.
> >>>>
> >>>> Pei, are you still working on this? I'm currently unable to use the
> >>>> dependency parser from another project because it can't find it's
> >>>> resources. Specifically, it fails on this line:
> >>>>
> >>>> URL lemmatizerDataFileURL =3D
> >>>> this.getClass().getResource(ENG_LEMMATIZER_DATA_FILE);
> >>>>
> >>>> I would take a stab at fixing these myself, but the JCasGen issue
> >>>> makes these kind of broad changes really difficult for me.
> >>>>
> >>>> Steve
> >>>
> >