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From Steven Bethard <steven.beth...@Colorado.EDU>
Subject Re: location for SHARP Knowtator reader?
Date Fri, 05 Oct 2012 17:02:07 GMT
On Oct 5, 2012, at 10:53 AM, "Chen, Pei" <Pei.Chen@childrens.harvard.edu> wrote:
> Thanks Steve.
> Would you mind also running 
> mvn license:check and to format headers- license:format 
> on the project(s) to verify the ASF License headers for any new files?

Done.

> We'll see if we could start making the type system changes as soon as 3.0.0-incubating
looks fairly stable with just all of the refactoring, namespaces, maven integration.

Sounds good.

Steve

> 
>> -----Original Message-----
>> From: Steven Bethard [mailto:steven.bethard@Colorado.EDU]
>> Sent: Thursday, October 04, 2012 10:40 PM
>> To: ctakes-dev@incubator.apache.org
>> Subject: Re: location for SHARP Knowtator reader?
>> 
>> The code is now here:
>> 
>> ctakes-
>> core/src/main/java/org/apache/ctakes/core/ae/SHARPKnowtatorXMLReade
>> r.java
>> ctakes-
>> core/src/main/java/org/apache/ctakes/core/knowtator/KnowtatorAnnotati
>> on.java
>> ctakes-
>> core/src/main/java/org/apache/ctakes/core/knowtator/KnowtatorXMLPars
>> er.java
>> 
>> I worked for a bit on filling in Knowtator/UIMA mappings in
>> SHARPKnowtatorXMLReader, but it's pretty tough, particularly without the
>> updates to the type system to add Generic, Conditional, Uncertainty, etc.
>> 
>> You can get a flavor for many of the changes that need to be made to the
>> type system by scanning through all the TODO notes in that file...
>> 
>> Steve
>> 
>> 
>> On Oct 2, 2012, at 12:38 PM, "Chen, Pei" <Pei.Chen@childrens.harvard.edu>
>> wrote:
>> 
>>> Either ctakes-core or ctakes-utils seems appropriate...
>>> 
>>> --Pei
>>> 
>>>> -----Original Message-----
>>>> From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
>>>> Sent: Tuesday, October 02, 2012 2:30 PM
>>>> To: 'ctakes-dev@incubator.apache.org'
>>>> Subject: RE: location for SHARP Knowtator reader?
>>>> 
>>>> 
>>>> +1 for ctakes-core
>>>> 
>>>> 
>>>>> -----Original Message-----
>>>>> From: ctakes-dev-return-477-
>>>> Masanz.James=mayo.edu@incubator.apache.org
>>>>> [mailto:ctakes-dev-return-477-
>>>> Masanz.James=mayo.edu@incubator.apache.o
>>>>> rg]
>>>>> On Behalf Of Steven Bethard
>>>>> Sent: Tuesday, October 02, 2012 12:54 PM
>>>>> To: ctakes-dev@incubator.apache.org
>>>>> Subject: location for SHARP Knowtator reader?
>>>>> 
>>>>> Now that we've finally got the Apache repository working, I'd like
>>>>> to add the code for reading Knowtator XML annotations into the UIMA
>>>>> type
>>>> system.
>>>>> There are basically two pieces of this code, a generic parser for
>>>>> reading Knowtator XML files, and an AnalysisEngine that reads the
>>>>> Knowtator XML files created from the SHARP project and maps them to
>>>>> the cTAKES type
>>>>> system:
>>>>> 
>>>>> https://github.com/bethard/ctakes-
>>>>> 
>>>> 
>> temporal/blob/master/src/main/java/org/apache/ctakes/knowtator/Knowt
>>>> at
>>>>> orXM
>>>>> LParser.java
>>>>> https://github.com/bethard/ctakes-
>>>>> 
>>>> 
>> temporal/blob/master/src/main/java/org/apache/ctakes/sharp/ae/Knowtat
>>>> o
>>>>> rXML
>>>>> Reader.java
>>>>> 
>>>>> Where should these go? Maybe ctakes-core? The dependencies are
>> only
>>>>> the ctakes-type-system and JDOM.
>>>>> 
>>>>> Steve
> 


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