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From "Wu, Stephen T., Ph.D." <Wu.Step...@mayo.edu>
Subject Re: build problem
Date Wed, 10 Oct 2012 16:03:22 GMT
I had similar errors... I tried the following in iterative fashion:
  1. run maven install from the root ctakes directory and the projects that
had problems
  2. try to maven->update dependencies and maven->update project
configuration on projects that had problems

Eventually the errors went away.  Then I had to do another maven install on
the root directory in order to get the types to actually show up in imports.

stephen


On 10/10/12 10:51 AM, "Dmitriy Dligach"
<dmitriy.dligach@childrens.harvard.edu> wrote:

> Sorry. Here it is:
> 
> 
> [INFO] 
> ------------------------------------------------------------------------
> [INFO] Reactor Summary:
> [INFO]
> [INFO] cTAKES ............................................ SUCCESS [0.496s]
> [INFO] Apache cTAKES common type system .................. SUCCESS [5.212s]
> [INFO] Apache cTAKES utils ............................... SUCCESS [0.255s]
> [INFO] Apache cTAKES core ................................ SUCCESS [0.312s]
> [INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [0.240s]
> [INFO] Apache cTAKES chunker ............................. SUCCESS [0.267s]
> [INFO] Apache cTAKES document preprocessor ............... SUCCESS [0.404s]
> [INFO] Apache cTAKES dictionary lookup ................... SUCCESS [0.789s]
> [INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [0.194s]
> [INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [0.234s]
> [INFO] Apache cTAKES named entity contexts ............... SUCCESS [0.185s]
> [INFO] Apache cTAKES Constituency Parser ................. SUCCESS [11.004s]
> [INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [2.009s]
> [INFO] Apache cTAKES Drug NER ............................ SUCCESS [3.798s]
> [INFO] Apache cTAKES Side Effects ........................ SUCCESS [2.474s]
> [INFO] Apache cTAKES Smoking Status ...................... FAILURE [0.326s]
> [INFO] Apache cTAKES Dependency Parser ................... SKIPPED
> [INFO] Apache cTAKES Relation Extractor .................. SKIPPED
> [INFO] Apache cTAKES Assertion ........................... SKIPPED
> [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
> [INFO] Apache cTAKES Pad Term Spotter .................... SKIPPED
> [INFO] 
> ------------------------------------------------------------------------
> [INFO] BUILD FAILURE
> [INFO] 
> ------------------------------------------------------------------------
> [INFO] Total time: 28.930s
> [INFO] Finished at: Wed Oct 10 11:50:48 EDT 2012
> [INFO] Final Memory: 20M/202M
> [INFO] 
> ------------------------------------------------------------------------
> [ERROR] Failed to execute goal
> org.codehaus.mojo:exec-maven-plugin:1.2.1:java
> (run-jcasgen-ctakes-smoking-status) on project ctakes-smoking-status: An
> exception occured while executing the Java class. null:
> InvocationTargetException: An import could not be resolved.  No .xml
> file with name "org.apache.ctakes.smokingstatus.types.I2B2TypeSystem"
> was found in the class path or data path. (Descriptor:
> file:/home/dima/workspaces/apache/ctakes/ctakes-smoking-status/target/classes/
> org/apache/ctakes/smokingstatus/types/TypeSystem.xml)
> -> [Help 1]
> 
> 
> On 10/10/2012 11:49 AM, Steven Bethard wrote:
>> On Oct 10, 2012, at 9:40 AM, Dmitriy Dligach
>> <dmitriy.dligach@childrens.harvard.edu> wrote:
>>> I am trying to check out cTAKES and build it but I am getting a build
>>> error. Maven stumbles on the smoking-status module. I think the problem
>>> is in TypeSystem.xml file in the smoking-status module. Maven has
>>> problems importing the common type system, i.e.:
>>> 
>>>      <import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
>> Can you paste the error you're getting?
>> 
>> Steve
> 


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