Return-Path: X-Original-To: apmail-incubator-ctakes-dev-archive@minotaur.apache.org Delivered-To: apmail-incubator-ctakes-dev-archive@minotaur.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 03DF2DBC4 for ; Mon, 24 Sep 2012 14:55:08 +0000 (UTC) Received: (qmail 47770 invoked by uid 500); 24 Sep 2012 14:55:07 -0000 Delivered-To: apmail-incubator-ctakes-dev-archive@incubator.apache.org Received: (qmail 47733 invoked by uid 500); 24 Sep 2012 14:55:07 -0000 Mailing-List: contact ctakes-dev-help@incubator.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: ctakes-dev@incubator.apache.org Delivered-To: mailing list ctakes-dev@incubator.apache.org Received: (qmail 47653 invoked by uid 99); 24 Sep 2012 14:55:07 -0000 Received: from arcas.apache.org (HELO arcas.apache.org) (140.211.11.28) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 24 Sep 2012 14:55:07 +0000 Date: Tue, 25 Sep 2012 01:55:07 +1100 (NCT) From: "Pei Chen (JIRA)" To: ctakes-dev@incubator.apache.org Message-ID: <382873716.116914.1348498507878.JavaMail.jiratomcat@arcas> In-Reply-To: <1377698354.109485.1348260607489.JavaMail.jiratomcat@arcas> Subject: [jira] [Commented] (CTAKES-63) exception formed by malformed email address MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-JIRA-FingerPrint: 30527f35849b9dde25b450d4833f0394 [ https://issues.apache.org/jira/browse/CTAKES-63?page=3Dcom.atlassian.= jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=3D13461= 843#comment-13461843 ]=20 Pei Chen commented on CTAKES-63: -------------------------------- Could recreate this in ctakes v2.5 Cas visual debugger with the standard Ag= gregatePlainTextPipeline. Example Text to recreate: =E2=80=9CFrom: Chen, Pei [mailto:abcoman@t-nec.org] Sent: Wednesday, Februa= ry 27, 2008 12:55 PMTo: Chen, Pei M.,M.D.Subject: RE: blah blah blah=E2=80= =9D Full Exception: Exception: 2012-09-21 12:48:36,789 INFO edu.mayo.bmi.uima.lookup.ae.UmlsDictionaryLoo= kupAnnotator - process(JCas) org.apache.lucene.queryParser.ParseException: Cannot parse 'mailto:abcoman@= t nec.org]': Lexical error at line 1, column 26. Encountered: after = : "" at org.apache.lucene.queryParser.QueryParser.parse(QueryParser.java:= 192) at edu.mayo.bmi.dictionary.lucene.LuceneDictionaryImpl.getEntries(Lu= ceneDictionaryImpl.java:106) at edu.mayo.bmi.dictionary.DictionaryEngine.metaLookup(DictionaryEng= ine.java:181) at edu.mayo.bmi.lookup.algorithms.FirstTokenPermutationImpl.getFirst= TokenHits(FirstTokenPermutationImpl.java:701) at edu.mayo.bmi.lookup.algorithms.FirstTokenPermutationImpl.lookup(F= irstTokenPermutationImpl.java:145) at edu.mayo.bmi.uima.lookup.ae.DictionaryLookupAnnotator.performLook= up(DictionaryLookupAnnotator.java:155) at edu.mayo.bmi.uima.lookup.ae.DictionaryLookupAnnotator.process(Dic= tionaryLookupAnnotator.java:131) at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process= (JCasAnnotator_ImplBase.java:48) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl= .callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl= .processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIte= rator.processUntilNextOutputCas(ASB_impl.java:567) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIte= rator.(ASB_impl.java:409) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_imp= l.java:342) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl= .processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267) at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.proce= ss(AnalysisEngineImplBase.java:267) at org.apache.uima.tools.cvd.MainFrame.internalRunAE(MainFrame.java:= 1526) at org.apache.uima.tools.cvd.MainFrame.runAE(MainFrame.java:430) at org.apache.uima.tools.cvd.control.AnnotatorRerunEventHandler.acti= onPerformed(AnnotatorRerunEventHandler.java:40) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source= ) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source= ) at javax.swing.DefaultButtonModel.setPressed(Unknown Source) at javax.swing.AbstractButton.doClick(Unknown Source) at javax.swing.AbstractButton.doClick(Unknown Source) at javax.swing.plaf.basic.BasicMenuItemUI$Actions.actionPerformed(Un= known Source) at javax.swing.SwingUtilities.notifyAction(Unknown Source) at javax.swing.JComponent.processKeyBinding(Unknown Source) at javax.swing.JMenuBar.processBindingForKeyStrokeRecursive(Unknown = Source) at javax.swing.JMenuBar.processBindingForKeyStrokeRecursive(Unknown = Source) at javax.swing.JMenuBar.processBindingForKeyStrokeRecursive(Unknown = Source) at javax.swing.JMenuBar.processKeyBinding(Unknown Source) at javax.swing.KeyboardManager.fireBinding(Unknown Source) at javax.swing.KeyboardManager.fireKeyboardAction(Unknown Source) at javax.swing.JComponent.processKeyBindingsForAllComponents(Unknown= Source) at javax.swing.JComponent.processKeyBindings(Unknown Source) at javax.swing.JComponent.processKeyEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.KeyboardFocusManager.redispatchEvent(Unknown Source) at java.awt.DefaultKeyboardFocusManager.dispatchKeyEvent(Unknown Sou= rce) at java.awt.DefaultKeyboardFocusManager.preDispatchKeyEvent(Unknown = Source) at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(Unknown = Source) at java.awt.DefaultKeyboardFocusManager.dispatchEvent(Unknown Source= ) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$000(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unkn= own Source) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unkn= own Source) at java.awt.EventQueue$2.run(Unknown Source) at java.awt.EventQueue$2.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unkn= own Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Sourc= e) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Sourc= e) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Caused by: org.apache.lucene.queryParser.TokenMgrError: Lexical error at li= ne 1, column 26. Encountered: after : "" at org.apache.lucene.queryParser.QueryParserTokenManager.getNextToke= n(QueryParserTokenManager.java:1229) at org.apache.lucene.queryParser.QueryParser.jj_scan_token(QueryPars= er.java:1650) at org.apache.lucene.queryParser.QueryParser.jj_3R_2(QueryParser.jav= a:1533) at org.apache.lucene.queryParser.QueryParser.jj_3_1(QueryParser.java= :1540) at org.apache.lucene.queryParser.QueryParser.jj_2_1(QueryParser.java= :1526) at org.apache.lucene.queryParser.QueryParser.Clause(QueryParser.java= :1221) at org.apache.lucene.queryParser.QueryParser.Query(QueryParser.java:= 1207) at org.apache.lucene.queryParser.QueryParser.TopLevelQuery(QueryPars= er.java:1167) at org.apache.lucene.queryParser.QueryParser.parse(QueryParser.java:= 182) ... 67 more =20 > exception formed by malformed email address > ------------------------------------------- > > Key: CTAKES-63 > URL: https://issues.apache.org/jira/browse/CTAKES-63 > Project: cTAKES > Issue Type: Bug > Components: ctakes-dictionary-lookup > Affects Versions: 2.6-incubating > Environment: windows > Reporter: Chen Lin > Priority: Critical > Labels: Stability > > 2012-09-21 12:48:36,789 INFO edu.mayo.bmi.uima.lookup.ae.UmlsDictionaryL= ookupAnnotator - process(JCas) > org.apache.lucene.queryParser.ParseException: Cannot parse 'mailto:abcoma= n@t nec.org]': Lexical error at line 1, column 26. Encountered: afte= r : "" > at org.apache.lucene.queryParser.QueryParser.parse(QueryParser.jav= a:192) > at edu.mayo.bmi.dictionary.lucene.LuceneDictionaryImpl.getEntries(= LuceneDictionaryImpl.java:106) > at edu.mayo.bmi.dictionary.DictionaryEngine.metaLookup(DictionaryE= ngine.java:181) -- This message is automatically generated by JIRA. If you think it was sent incorrectly, please contact your JIRA administrato= rs For more information on JIRA, see: http://www.atlassian.com/software/jira