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From chen...@apache.org
Subject svn commit: r1444112 - in /incubator/ctakes/trunk: ctakes-clinical-pipeline/pom.xml ctakes-core/pom.xml ctakes-distribution/src/main/assembly/bin.xml ctakes-drug-ner/pom.xml pom.xml
Date Fri, 08 Feb 2013 16:32:29 GMT
Author: chenpei
Date: Fri Feb  8 16:32:28 2013
New Revision: 1444112

URL: http://svn.apache.org/r1444112
Log:
CTAKES-76 - get third party dependencies into Maven Central
The below 3rd party libs have been uploaded to ossonatype and maven central now.
They no longer have to be referenced locally via system path.

OpenAI_FSM.jar 
FindStructAPI.jar 
SQLWrapper.jar 
structmulti.jar

Modified:
    incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml
    incubator/ctakes/trunk/ctakes-core/pom.xml
    incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/bin.xml
    incubator/ctakes/trunk/ctakes-drug-ner/pom.xml
    incubator/ctakes/trunk/pom.xml

Modified: incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml?rev=1444112&r1=1444111&r2=1444112&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml Fri Feb  8 16:32:28 2013
@@ -113,27 +113,6 @@
 							<!-- System lib dependencies is causing a world of pain. Remove these 
 								when they're uploaded to Maven Central -->
 							<dependency>
-								<groupId>net.sourceforge.openai</groupId>
-								<artifactId>fsm</artifactId>
-								<version>0.1a</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-core/lib/OpenAI_FSM.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>findstruct</groupId>
-								<artifactId>findstruct</artifactId>
-								<version>0.0.1</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-core/lib/FindStructAPI.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>sqlWrapper</groupId>
-								<artifactId>sqlWrapper</artifactId>
-								<version>0.0.1</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-core/lib/SQLWrapper.jar</systemPath>
-							</dependency>
-							<dependency>
 								<groupId>org.mitre.medfacts</groupId>
 								<artifactId>medfacts-i2b2</artifactId>
 								<version>1.2</version>
@@ -212,27 +191,6 @@
 							<!-- System lib dependencies is causing a world of pain. Remove these 
 								when they're uploaded to Maven Central -->
 							<dependency>
-								<groupId>net.sourceforge.openai</groupId>
-								<artifactId>fsm</artifactId>
-								<version>0.1a</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-core/lib/OpenAI_FSM.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>findstruct</groupId>
-								<artifactId>findstruct</artifactId>
-								<version>0.0.1</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-core/lib/FindStructAPI.jar</systemPath>
-							</dependency>
-							<dependency>
-								<groupId>sqlWrapper</groupId>
-								<artifactId>sqlWrapper</artifactId>
-								<version>0.0.1</version>
-								<scope>system</scope>
-								<systemPath>${project.basedir}/../ctakes-core/lib/SQLWrapper.jar</systemPath>
-							</dependency>
-							<dependency>
 								<groupId>org.mitre.medfacts</groupId>
 								<artifactId>medfacts-i2b2</artifactId>
 								<version>1.2</version>

Modified: incubator/ctakes/trunk/ctakes-core/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/pom.xml?rev=1444112&r1=1444111&r2=1444112&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/pom.xml Fri Feb  8 16:32:28 2013
@@ -79,29 +79,17 @@
 			<groupId>junit</groupId>
 			<artifactId>junit</artifactId>
 		</dependency>
-
-		<!-- Dependencies that still need to be uploaded to Maven Central; when 
-			done, the dependency versions should be moved into the parent pom -->
 		<dependency>
-			<groupId>net.sourceforge.openai</groupId>
-			<artifactId>fsm</artifactId>
-			<version>0.1a</version>
-			<scope>system</scope>
-			<systemPath>${project.basedir}/lib/OpenAI_FSM.jar</systemPath>
+			<groupId>edu.mit.findstruct</groupId>
+			<artifactId>findstructapi</artifactId>
 		</dependency>
 		<dependency>
-			<groupId>findstruct</groupId>
-			<artifactId>findstruct</artifactId>
-			<version>0.0.1</version>
-			<scope>system</scope>
-			<systemPath>${project.basedir}/lib/FindStructAPI.jar</systemPath>
+			<groupId>com.googlecode.armbrust-file-utils</groupId>
+			<artifactId>sqlwrapper</artifactId>
 		</dependency>
 		<dependency>
-			<groupId>sqlWrapper</groupId>
-			<artifactId>sqlWrapper</artifactId>
-			<version>0.0.1</version>
-			<scope>system</scope>
-			<systemPath>${project.basedir}/lib/SQLWrapper.jar</systemPath>
-		</dependency>
+			<groupId>net.sourceforge.openai</groupId>
+			<artifactId>openaifsm</artifactId>
+		</dependency>		
 	</dependencies>
 </project>

Modified: incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/bin.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/bin.xml?rev=1444112&r1=1444111&r2=1444112&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/bin.xml (original)
+++ incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/bin.xml Fri Feb  8 16:32:28
2013
@@ -73,17 +73,6 @@
 		<fileSet>
 			<!-- Temporary workaround: Adding in the system scoped libaries. Remove 
 				these once they are in Maven Central -->
-			<directory>../ctakes-core/lib</directory>
-			<outputDirectory>lib</outputDirectory>
-			<includes>
-				<include>OpenAI_FSM.jar</include>
-				<include>FindStructAPI.jar</include>
-				<include>SQLWrapper.jar</include>
-			</includes>
-		</fileSet>
-		<fileSet>
-			<!-- Temporary workaround: Adding in the system scoped libaries. Remove 
-				these once they are in Maven Central -->
 			<directory>../ctakes-assertion/lib</directory>
 			<outputDirectory>lib</outputDirectory>
 			<includes>

Modified: incubator/ctakes/trunk/ctakes-drug-ner/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/pom.xml?rev=1444112&r1=1444111&r2=1444112&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/pom.xml Fri Feb  8 16:32:28 2013
@@ -80,11 +80,8 @@
 		</dependency>
 		<dependency>
 			<groupId>net.sourceforge.openai</groupId>
-			<artifactId>fsm</artifactId>
-			<version>0.1a</version>
-			<scope>system</scope>
-			<systemPath>${project.basedir}/../ctakes-core/lib/OpenAI_FSM.jar</systemPath>
-		</dependency>
+			<artifactId>openaifsm</artifactId>
+		</dependency>	
 		<dependency>
 			<groupId>org.apache.ctakes</groupId>
 			<artifactId>ctakes-chunker</artifactId>

Modified: incubator/ctakes/trunk/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/pom.xml?rev=1444112&r1=1444111&r2=1444112&view=diff
==============================================================================
--- incubator/ctakes/trunk/pom.xml (original)
+++ incubator/ctakes/trunk/pom.xml Fri Feb  8 16:32:28 2013
@@ -396,7 +396,26 @@
 				<artifactId>spring-core</artifactId>
 				<version>3.1.2.RELEASE</version>
 			</dependency>
-
+			<dependency>
+				<groupId>edu.mit.findstruct</groupId>
+				<artifactId>structmulti</artifactId>
+				<version>0.0.1</version>
+			</dependency>
+			<dependency>
+				<groupId>edu.mit.findstruct</groupId>
+				<artifactId>findstructapi</artifactId>
+				<version>0.0.1</version>
+			</dependency>
+			<dependency>
+				<groupId>com.googlecode.armbrust-file-utils</groupId>
+				<artifactId>sqlwrapper</artifactId>
+				<version>0.0.1</version>
+			</dependency>	
+			<dependency>
+				<groupId>net.sourceforge.openai</groupId>
+				<artifactId>openaifsm</artifactId>
+				<version>0.0.1</version>
+			</dependency>										
 		</dependencies>
 	</dependencyManagement>
 	<build>



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