Return-Path: X-Original-To: apmail-incubator-ctakes-commits-archive@minotaur.apache.org Delivered-To: apmail-incubator-ctakes-commits-archive@minotaur.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 830A6E261 for ; Tue, 29 Jan 2013 20:06:33 +0000 (UTC) Received: (qmail 88923 invoked by uid 500); 29 Jan 2013 20:06:33 -0000 Delivered-To: apmail-incubator-ctakes-commits-archive@incubator.apache.org Received: (qmail 88903 invoked by uid 500); 29 Jan 2013 20:06:33 -0000 Mailing-List: contact ctakes-commits-help@incubator.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: ctakes-dev@incubator.apache.org Delivered-To: mailing list ctakes-commits@incubator.apache.org Received: (qmail 88896 invoked by uid 99); 29 Jan 2013 20:06:33 -0000 Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 29 Jan 2013 20:06:33 +0000 X-ASF-Spam-Status: No, hits=-2000.0 required=5.0 tests=ALL_TRUSTED X-Spam-Check-By: apache.org Received: from [140.211.11.4] (HELO eris.apache.org) (140.211.11.4) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 29 Jan 2013 20:06:30 +0000 Received: from eris.apache.org (localhost [127.0.0.1]) by eris.apache.org (Postfix) with ESMTP id C15F02388900; Tue, 29 Jan 2013 20:06:10 +0000 (UTC) Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Subject: svn commit: r1440093 - /incubator/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventTimeRelationAnnotator.java Date: Tue, 29 Jan 2013 20:06:10 -0000 To: ctakes-commits@incubator.apache.org From: stevenbethard@apache.org X-Mailer: svnmailer-1.0.8-patched Message-Id: <20130129200610.C15F02388900@eris.apache.org> X-Virus-Checked: Checked by ClamAV on apache.org Author: stevenbethard Date: Tue Jan 29 20:06:09 2013 New Revision: 1440093 URL: http://svn.apache.org/viewvc?rev=1440093&view=rev Log: Fixes temporal relation annotator to look for annotations in either order (event-time, time-event) Modified: incubator/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventTimeRelationAnnotator.java Modified: incubator/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventTimeRelationAnnotator.java URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventTimeRelationAnnotator.java?rev=1440093&r1=1440092&r2=1440093&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventTimeRelationAnnotator.java (original) +++ incubator/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventTimeRelationAnnotator.java Tue Jan 29 20:06:09 2013 @@ -1,17 +1,22 @@ package org.apache.ctakes.temporal.ae; import java.io.File; +import java.util.Arrays; import java.util.List; +import java.util.Map; import org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator; import org.apache.ctakes.relationextractor.ae.features.PartOfSpeechFeaturesExtractor; import org.apache.ctakes.relationextractor.ae.features.RelationFeaturesExtractor; import org.apache.ctakes.relationextractor.ae.features.TokenFeaturesExtractor; +import org.apache.ctakes.typesystem.type.relation.BinaryTextRelation; import org.apache.ctakes.typesystem.type.textsem.EventMention; +import org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation; import org.apache.ctakes.typesystem.type.textsem.TimeMention; import org.apache.ctakes.typesystem.type.textspan.Sentence; import org.apache.uima.analysis_engine.AnalysisEngineDescription; import org.apache.uima.jcas.JCas; +import org.apache.uima.jcas.tcas.Annotation; import org.apache.uima.resource.ResourceInitializationException; import org.cleartk.classifier.CleartkAnnotator; import org.cleartk.classifier.DataWriter; @@ -39,7 +44,7 @@ public class EventTimeRelationAnnotator outputDirectory, RelationExtractorAnnotator.PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE, // not sure why this has to be cast; something funny going on in uimaFIT maybe? - (float)probabilityOfKeepingANegativeExample); + (float) probabilityOfKeepingANegativeExample); } public static AnalysisEngineDescription createAnnotatorDescription(File modelDirectory) @@ -69,4 +74,25 @@ public class EventTimeRelationAnnotator } return pairs; } + + @Override + protected String getRelationCategory( + Map, BinaryTextRelation> relationLookup, + IdentifiedAnnotation arg1, + IdentifiedAnnotation arg2) { + BinaryTextRelation relation = relationLookup.get(Arrays.asList(arg1, arg2)); + String category = null; + if (relation != null) { + category = relation.getCategory(); + } else { + relation = relationLookup.get(Arrays.asList(arg2, arg1)); + if (relation != null) { + category = relation.getCategory() + "-1"; + } + } + if (category == null && coin.nextDouble() <= this.probabilityOfKeepingANegativeExample) { + category = NO_RELATION_CATEGORY; + } + return category; + } }