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From blee...@apache.org
Subject svn commit: r1409958 - /incubator/ctakes/site/trunk/content/ctakes/3.0.0/user-guide-3.0.mdtext
Date Thu, 15 Nov 2012 19:57:05 GMT
Author: bleeker
Date: Thu Nov 15 19:57:04 2012
New Revision: 1409958

URL: http://svn.apache.org/viewvc?rev=1409958&view=rev
Log:
CMS commit to ctakes by bleeker

Modified:
    incubator/ctakes/site/trunk/content/ctakes/3.0.0/user-guide-3.0.mdtext

Modified: incubator/ctakes/site/trunk/content/ctakes/3.0.0/user-guide-3.0.mdtext
URL: http://svn.apache.org/viewvc/incubator/ctakes/site/trunk/content/ctakes/3.0.0/user-guide-3.0.mdtext?rev=1409958&r1=1409957&r2=1409958&view=diff
==============================================================================
--- incubator/ctakes/site/trunk/content/ctakes/3.0.0/user-guide-3.0.mdtext (original)
+++ incubator/ctakes/site/trunk/content/ctakes/3.0.0/user-guide-3.0.mdtext Thu Nov 15 19:57:04
2012
@@ -223,8 +223,8 @@ two things:
 
 1. Change the UMLSUser and UMLSPW <nameValuePair> strings in these descriptor
 files with your UMLS username and password.
- - Dictionary Lookup: <cTAKES_HOME>/cTAKESdesc/lookupdesc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml
- - (optional) Drug NER: <cTAKES_HOME>/cTAKESdesc/drugnerdesc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml
+ * Dictionary Lookup: <cTAKES_HOME>/cTAKESdesc/lookupdesc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml
+ * (optional) Drug NER: <cTAKES_HOME>/cTAKESdesc/drugnerdesc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml
 The following shows where in the files you would make the changes. (Do not
 change the <configurationParameters> by the same name.)
 <pre>
@@ -246,11 +246,10 @@ aggregate Analysis Engine or switch to t
 provided duplicates of shipped Analysis Engine descriptors, put UMLS in the
 name, and placed DictionaryLookupAnnotatorUMLS.xml within them for these
 components:
-
-  * Dictionary Lookup
-  * Clinical Documents pipeline
-  * Drug NER
-  * Side Effect
+ * Dictionary Lookup
+ * Clinical Documents pipeline
+ * Drug NER
+ * Side Effect
 
 So you simply need to switch to using those descriptors. For example, if you
 were using AggregateCdaProcessor.xml in the Clinical Documents pipeline you
@@ -293,11 +292,11 @@ the cTAKES forums:
 ### Models
 
 Some models included in cTAKES may not represent your data distribution well.
-If you want to build or train your own models, please read the [cTAKES 2.5
-Component Use Guide](/display/VKC/cTAKES+2.5+Component+Use+Guide),
+If you want to build or train your own models, please read the [cTAKES 3.0 
+Component Use Guide](3.0.0/component-use-guide-3.0),
 particularly:
 
-  * [Training a sentence detector model](https://wiki.nci.nih.gov/display/VKC/cTAKES+2.5+-+Core#cTAKES2.5-Core-ToolsTrainingasentencedetectormodel)
+  * [Training a sentence detector model](NotYet Available)
   * Training a Part of Speech (POS) tagger model (Building a model Obtaining training data)
   * Creating a Part of Speech (POS) tag dictionary (Building a tag dictionary)
   * Training a chunker model (Building a model - Prepare GENIA training data)



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