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From build...@apache.org
Subject svn commit: r838463 - in /websites/staging/ctakes/trunk/content: ./ ctakes/3.0.0/user-guide-3.0.html
Date Thu, 15 Nov 2012 17:41:58 GMT
Author: buildbot
Date: Thu Nov 15 17:41:57 2012
New Revision: 838463

Log:
Staging update by buildbot for ctakes

Modified:
    websites/staging/ctakes/trunk/content/   (props changed)
    websites/staging/ctakes/trunk/content/ctakes/3.0.0/user-guide-3.0.html

Propchange: websites/staging/ctakes/trunk/content/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Thu Nov 15 17:41:57 2012
@@ -1 +1 @@
-1409870
+1409895

Modified: websites/staging/ctakes/trunk/content/ctakes/3.0.0/user-guide-3.0.html
==============================================================================
--- websites/staging/ctakes/trunk/content/ctakes/3.0.0/user-guide-3.0.html (original)
+++ websites/staging/ctakes/trunk/content/ctakes/3.0.0/user-guide-3.0.html Thu Nov 15 17:41:57
2012
@@ -140,7 +140,7 @@ paths on your machine.</p>
 </li>
 <li>
 <p>An analysis engine (AE) needs to be loaded in order to process text.<br />
-Use the <strong>Run</strong> -&gt; <strong>Load AE</strong> menu
bar command. Navigate to the file. Click <strong>Open</strong>.</p>
+Use the <strong>Run</strong> -&gt; <strong>Load AE</strong> menu
bar command. Navigate to the file: <code><cTAKES_HOME>/cTAKESdesc/cdpdesc/analysis_engine/AggregatePlaintextProcessor.xml</code>
Click <strong>Open</strong>.</p>
 </li>
 <li>
 <p>Copy the text in this example and paste the contents into the Text section of CVD,
replacing the text that is already
@@ -181,67 +181,53 @@ edu.mayo.bmi.uima.core.type.textsem.Even
 edu.mayo.bmi.uima.core.type.textsem.EventMention.MedicationEventMention
 </pre></p>
 </li>
-</ol>
-<p>Then select <strong>edu.mayo.bmi.uima.core.type.<strong><em>*textsem.</em></strong>*EntityMention</strong>
or <em>
+<li>Then select <strong>edu.mayo.bmi.uima.core.type.<strong><em>*textsem.</em></strong>*EntityMention</strong>
or <em>
 </em>edu.mayo.bmi.uima.core.type.<strong><em>*textsem.</em></strong><em>EventMention.<strong><em>*Medication</em></strong></em>Ev
 entMention**.This will show an Annotation Index in the lower frame. Select any
 annotation in that lower frame and you will see the text discovered in the
-Text frame on the right. You may close CVD if you wish.</p>
+Text frame on the right.</li>
+</ol>
 <h3 id="collection-processing-engine-cpe">Collection processing engine (CPE)</h3>
 <p>The <a href="http://uima.apache.org/downloads/releaseDocs/2.2.2-incubating/docs/html/tools/tools.html#ugr.tools.cpe">Collection
Processing Engine (CPE) Configuration GUI</a> is for configuring components (aka analysis
engine) to process documents (called a pipeline).</p>
 <ol>
-<li>Open a command prompt and change to the cTAKES_HOME directory:</li>
-</ol>
-<p><strong>Windows</strong>: <br />
-</p>
-<p><strong>Linux</strong>: <br />
-</p>
-<p><img alt="" src="/images/icons/emoticons/warning.png" /></p>
-<p><strong>Note</strong><br />
-</p>
-<p>Note that cTAKES_HOME must be your current directory unless you are skilled at
-setting paths on your machine.</p>
-<ol>
-<li>Start the collection processing engine by running this command:</li>
-</ol>
-<p><strong>Windows</strong>: <br />
-</p>
-<p><strong>Linux</strong>: <br />
-</p>
-<p>The application may take a minute to start on slower hardware.</p>
-<p><img alt="screenshot illustrating step" src="/download/attachments/75014322/worddav6ae43931"
title="208c6ae30f6e836859a2bb19.png?version=1&amp;modificationDate=1334686366000" /></p>
-<ol>
-<li>This will bring up the Collection Processing Engine Configurator. In the
-Menu bar click <strong>File</strong> &gt; <strong>Open CPE Descriptor</strong></li>
-</ol>
-<p><img alt="screenshot illustrating step" src="/download/attachments/75014322/worddavdc5a7f71"
title="827d9e3ef9c3f0c241804365.png?version=1&amp;modificationDate=1334686366000" /></p>
-<ol>
-<li>Navigate to the file</li>
-</ol>
-<p>Click <strong>Open</strong>.</p>
-<p><img alt="screenshot illustrating step" src="/download/attachments/75014322/worddav41b2878f"
title="e8e61ee02d2c07e89c106cdd.png?version=1&amp;modificationDate=1334686365000" /></p>
-<ol>
-<li>Click the Play button (green/blue <strong>play arrow</strong> near
the bottom).</li>
-</ol>
-<p><img alt="screenshot illustrating step" src="/download/attachments/75014322/worddav9acbe68c"
title="6f920e134a8eb49db96025e7.png?version=1&amp;modificationDate=1334686365000" /></p>
-<ol>
-<li>You should see that one document was processed. You did process a
-collection of documents. In this case the collection only contained one just
-to show how to do it. Close the results window.</li>
-</ol>
-<p><img alt="screenshot illustrating step" src="/download/attachments/75014322/worddav42012486"
title="af09ef9457b4022474979a83.png?version=1&amp;modificationDate=1334686366000" /></p>
-<ol>
-<li>Close the CPE application. You may be prompted to save changes. Since this
-was just a test you may click the <strong>No</strong> button.</li>
-</ol>
-<p><img alt="screenshot illustrating step" src="/download/attachments/75014322/worddav1c58ee84"
title="960f01830ce34429b3d96c3c.png?version=1&amp;modificationDate=1334686366000" /></p>
-<ol>
-<li>Open a new command prompt and change to the <cTAKES_HOME></li>
-</ol>
-<p>No example.</p>
-<ol>
-<li>To test the results there is a comparison tool that will help show that the
-results match expectations with the following syntax:</li>
+<li>
+<p>Open a command prompt and change to the cTAKES_HOME directory.<br />
+<strong>Windows</strong>: <code>cd \cTAKES-3.0</code> <strong>Linux</strong>:
<code>cd /usr/bin/cTAKES-3.0</code><br />
+&nbsp;<br />
+<strong>Note:</strong> cTAKES_HOME must be your current directory unless you
are skilled at setting
+paths on your machine.</p>
+</li>
+<li>
+<p>Start the Collection Processing Engine (CPE) by running this command. The application
may take a minute to start on slower hardware:<br />
+<strong>Windows</strong>: <code>runctakesCPE.bat</code> <strong>Linux</strong>:
<code>runctakesCPE.sh</code></p>
+</li>
+<li>
+<p>This will bring up the Collection Processing Engine Configurator. In the
+Menu bar click <strong>File</strong> &gt; <strong>Open CPE Descriptor</strong>.</p>
+</li>
+<li>
+<p>Navigate to the file: <code><cTAKES_HOME>/cTAKESdesc/cdpdesc/collection_processing_engine/test_plaintext.xml</code>
Click <strong>Open</strong>.</p>
+</li>
+<li>
+<p>Click the Play button (green/blue <strong>play arrow</strong> near the
bottom).</p>
+</li>
+<li>
+<p>You should see that one document was processed. A collection of documents was processed,
however, 
+in this case, the collection only contained one just
+to show how to do it.<br />
+Close the results window.</p>
+</li>
+<li>
+<p>Close the CPE application. You may be prompted to save changes. Since this
+was just a test you may click the <strong>No</strong> button.</p>
+</li>
+<li>
+<p>Open a new command prompt and change to the <cTAKES_HOME> directory.</p>
+</li>
+<li>
+<p>To test the results, you will use a comparison tool that will help show that the
+results match expectations with the following syntax:</p>
+</li>
 </ol>
 <p>Where: <strong><em><First File></em></strong> is the
first file to compare; <strong><em><Second File></em></strong>
is
 the second file to compare; <strong><em><diff-html></em></strong>
is where the results are written



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