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From chen...@apache.org
Subject svn commit: r1399782 [1/2] - in /incubator/ctakes/trunk: ./ ctakes-assertion/ ctakes-chunker/ ctakes-clinical-pipeline/ ctakes-constituency-parser/ ctakes-constituency-parser/desc/ ctakes-constituency-parser/desc/analysis_engine/ ctakes-context-tokeniz...
Date Thu, 18 Oct 2012 18:58:19 GMT
Author: chenpei
Date: Thu Oct 18 18:58:17 2012
New Revision: 1399782

URL: http://svn.apache.org/viewvc?rev=1399782&view=rev
Log:
https://issues.apache.org/jira/browse/CTAKES-73
-Renamed release to 3.0.0-incubating* (asf requires the suffix for incubation projects).
-Added missing ASF license headers to new files
-Moved licence_header to distribution/config
-Added logging config to distribution/config
-Updated scripts to use new logging props
-Removed filtering from the assembly bin when copying the system scoped jar files.

Added:
    incubator/ctakes/trunk/ctakes-distribution/src/main/config/
    incubator/ctakes/trunk/ctakes-distribution/src/main/config/FileConsoleLogger.properties
    incubator/ctakes/trunk/ctakes-distribution/src/main/config/Logger.properties
    incubator/ctakes/trunk/ctakes-distribution/src/main/config/license_header.txt
      - copied unchanged from r1399695, incubator/ctakes/trunk/license_header.txt
Removed:
    incubator/ctakes/trunk/license_header.txt
Modified:
    incubator/ctakes/trunk/ctakes-assertion/pom.xml
    incubator/ctakes/trunk/ctakes-chunker/pom.xml
    incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml
    incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml
    incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/ParserEvaluatorAnnotator.xml
    incubator/ctakes/trunk/ctakes-constituency-parser/pom.xml
    incubator/ctakes/trunk/ctakes-context-tokenizer/pom.xml
    incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/AggregateForTokenizerPTB.xml
    incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/SimpleSegmentAnnotator.xml
    incubator/ctakes/trunk/ctakes-core/pom.xml
    incubator/ctakes/trunk/ctakes-coreference/pom.xml
    incubator/ctakes/trunk/ctakes-dependency-parser/pom.xml
    incubator/ctakes/trunk/ctakes-dictionary-lookup/pom.xml
    incubator/ctakes/trunk/ctakes-distribution/RELEASE_NOTES.html
    incubator/ctakes/trunk/ctakes-distribution/pom.xml
    incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/bin.xml
    incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/src.xml
    incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.bat
    incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.sh
    incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCVD.bat
    incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCVD.sh
    incubator/ctakes/trunk/ctakes-drug-ner/pom.xml
    incubator/ctakes/trunk/ctakes-lvg/pom.xml
    incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/NegationAnnotator.xml
    incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/StatusAnnotator.xml
    incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/TestContextAnnotator.xml
    incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/TokenizerAnnotator.xml
    incubator/ctakes/trunk/ctakes-ne-contexts/pom.xml
    incubator/ctakes/trunk/ctakes-pad-term-spotter/pom.xml
    incubator/ctakes/trunk/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml
    incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/NullAnnotator.xml
    incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/OpenNLPPOSCollectionReader.xml
    incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/OpenNLPPOSCollectionReader2.xml
    incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/POSTagger.xml
    incubator/ctakes/trunk/ctakes-pos-tagger/pom.xml
    incubator/ctakes/trunk/ctakes-preprocessor/pom.xml
    incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml
    incubator/ctakes/trunk/ctakes-relation-extractor/pom.xml
    incubator/ctakes/trunk/ctakes-side-effect/pom.xml
    incubator/ctakes/trunk/ctakes-smoking-status/pom.xml
    incubator/ctakes/trunk/ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml
    incubator/ctakes/trunk/ctakes-temporal/pom.xml
    incubator/ctakes/trunk/ctakes-type-system/pom.xml
    incubator/ctakes/trunk/ctakes-utils/pom.xml
    incubator/ctakes/trunk/pom.xml

Modified: incubator/ctakes/trunk/ctakes-assertion/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-assertion/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-assertion/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<properties>
 		<jcasgen.typesystem>org/apache/ctakes/assertion/types/TypeSystem.xml</jcasgen.typesystem>

Modified: incubator/ctakes/trunk/ctakes-chunker/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-chunker/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-chunker/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-chunker/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<dependencies>
 		<dependency>

Modified: incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 
 

Modified: incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml Thu Oct 18 18:58:17 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/ParserEvaluatorAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/ParserEvaluatorAnnotator.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/ParserEvaluatorAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/ParserEvaluatorAnnotator.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-constituency-parser/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<properties>
 		<jcasgen.typesystem>org/apache/ctakes/constituency/parser/types/LabeledTree.xml</jcasgen.typesystem>

Modified: incubator/ctakes/trunk/ctakes-context-tokenizer/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-context-tokenizer/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-context-tokenizer/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-context-tokenizer/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<dependencies>
 		<dependency>

Modified: incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/AggregateForTokenizerPTB.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/AggregateForTokenizerPTB.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/AggregateForTokenizerPTB.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/AggregateForTokenizerPTB.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/SimpleSegmentAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/SimpleSegmentAnnotator.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/SimpleSegmentAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/SimpleSegmentAnnotator.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-core/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 
 	<dependencies>

Modified: incubator/ctakes/trunk/ctakes-coreference/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-coreference/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-coreference/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-coreference/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	
 	<properties>

Modified: incubator/ctakes/trunk/ctakes-dependency-parser/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dependency-parser/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dependency-parser/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-dependency-parser/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<!-- necessary for ClearParser -->
 	<repositories>

Modified: incubator/ctakes/trunk/ctakes-dictionary-lookup/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dictionary-lookup/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dictionary-lookup/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-dictionary-lookup/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<dependencies>
 		<dependency>

Modified: incubator/ctakes/trunk/ctakes-distribution/RELEASE_NOTES.html
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/RELEASE_NOTES.html?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/RELEASE_NOTES.html (original)
+++ incubator/ctakes/trunk/ctakes-distribution/RELEASE_NOTES.html Thu Oct 18 18:58:17 2012
@@ -1,20 +1,21 @@
 <!--
-    ***************************************************************
-    * Licensed to the Apache Software Foundation (ASF) under one
-    * or more contributor license agreements.  See the NOTICE file
-    * distributed with this work for additional information
-    * regarding copyright ownership.  The ASF licenses this file
-    * to you under the Apache License, Version 2.0 (the
-    * "License"); you may not use this file except in compliance
-    * with the License.  You may obtain a copy of the License at
-    *
-    *   http://www.apache.org/licenses/LICENSE-2.0
-    * 
-    * Unless required by applicable law or agreed to in writing,
-    * software distributed under the License is distributed on an
-    * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    * KIND, either express or implied.  See the License for the
-    * specific language governing permissions and limitations
-    * under the License.
-    ***************************************************************
---> 
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
+

Modified: incubator/ctakes/trunk/ctakes-distribution/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-distribution/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<packaging>pom</packaging>
 
@@ -118,7 +139,7 @@
 								than 100 chars. Right now only javadoc files are too long. -->
 							<tarLongFileMode>gnu</tarLongFileMode>
 
-							<finalName>apache-ctakes-${project.version}-incubating</finalName>
+							<finalName>apache-ctakes-${project.version}</finalName>
 						</configuration>
 					</execution>
 				</executions>

Modified: incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/bin.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/bin.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/bin.xml (original)
+++ incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/bin.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,23 @@
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <assembly>
 	<id>bin</id>
 	<formats>
@@ -48,9 +68,6 @@
 				these once they are in Maven Central -->
 			<directory>../ctakes-core/lib</directory>
 			<outputDirectory>lib</outputDirectory>
-			<filtered>true</filtered>
-			<fileMode>644</fileMode>
-			<directoryMode>755</directoryMode>
 			<includes>
 				<include>OpenAI_FSM.jar</include>
 				<include>FindStructAPI.jar</include>
@@ -62,9 +79,6 @@
 				these once they are in Maven Central -->
 			<directory>../ctakes-assertion/lib</directory>
 			<outputDirectory>lib</outputDirectory>
-			<filtered>true</filtered>
-			<fileMode>644</fileMode>
-			<directoryMode>755</directoryMode>
 			<includes>
 				<include>med-facts-i2b2-1.2-SNAPSHOT.jar</include>
 				<include>med-facts-zoner-1.1.jar</include>
@@ -77,9 +91,6 @@
 				these once they are in Maven Central -->
 			<directory>../ctakes-lvg/lib</directory>
 			<outputDirectory>lib</outputDirectory>
-			<filtered>true</filtered>
-			<fileMode>644</fileMode>
-			<directoryMode>755</directoryMode>
 			<includes>
 				<include>lvg2010dist.jar</include>				
 			</includes>
@@ -124,6 +135,13 @@
 			<directoryMode>755</directoryMode>
 			<outputDirectory>bin</outputDirectory>
 		</fileSet>
+		
+		<fileSet>
+			<directory>src/main/config</directory>
+			<fileMode>644</fileMode>
+			<directoryMode>755</directoryMode>
+			<outputDirectory>config</outputDirectory>
+		</fileSet>		
 
 		<!-- Copy all of the XML Descriptors. Temp Preserving this structure so 
 			that the relative paths still work. -->

Modified: incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/src.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/src.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/src.xml (original)
+++ incubator/ctakes/trunk/ctakes-distribution/src/main/assembly/src.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,23 @@
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <assembly>
   <id>src</id>
   <formats>
@@ -5,7 +25,7 @@
     <format>zip</format>
   </formats>
   
-  <baseDirectory>/apache-ctakes-${project.version}-incubating-src</baseDirectory>
+  <baseDirectory>/apache-ctakes-${project.version}-src</baseDirectory>
   
   <fileSets>
     <fileSet>

Modified: incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.bat
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.bat?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.bat (original)
+++ incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.bat Thu Oct 18 18:58:17 2012
@@ -35,6 +35,6 @@ goto end
 
 :okHome
 cd %CTAKES_HOME%
-java -cp "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc" -Djava.util.logging.config.file=%UIMA_HOME%/Logger.properties -Xms512M -Xmx1024M org.apache.uima.tools.cpm.CpmFrame
+java -cp "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc/*" -Djava.util.logging.config.file=%CTAKES_HOME%/config/Logger.properties -Xms512M -Xmx1024M org.apache.uima.tools.cpm.CpmFrame
 
 :end
\ No newline at end of file

Modified: incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.sh
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.sh?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.sh (original)
+++ incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.sh Thu Oct 18 18:58:17 2012
@@ -16,7 +16,7 @@
 # specific language governing permissions and limitations
 # under the License.
 #
-#
+
 # Requires JAVA JDK 1.6+
 
 PRG="$0"
@@ -35,4 +35,4 @@ PRGDIR=`dirname "$PRG"`
 [ -z "$CTAKES_HOME" ] && CTAKES_HOME=`cd "$PRGDIR/.." >/dev/null; pwd`
 
 cd $CTAKES_HOME
-java -cp $CTAKES_HOME/lib/*:$CTAKES_HOME/desc/ -Djava.util.logging.config.file=${UIMA_HOME}/Logger.properties -Xms512M -Xmx1024M org.apache.uima.tools.cpm.CpmFrame
+java -cp $CTAKES_HOME/lib/*:$CTAKES_HOME/desc/ -Djava.util.logging.config.file=%CTAKES_HOME%/config/Logger.properties -Xms512M -Xmx1024M org.apache.uima.tools.cpm.CpmFrame

Modified: incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCVD.bat
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCVD.bat?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCVD.bat (original)
+++ incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCVD.bat Thu Oct 18 18:58:17 2012
@@ -35,6 +35,6 @@ goto end
 
 :okHome
 cd %CTAKES_HOME%
-java -cp "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc" -Djava.util.logging.config.file=%UIMA_HOME%/Logger.properties -Xms512M -Xmx1024M org.apache.uima.tools.cvd.CVD
+java -cp "%CTAKES_HOME%/lib/*;%CTAKES_HOME%/desc" -Djava.util.logging.config.file=%CTAKES_HOME%/config/Logger.properties -Xms512M -Xmx1024M org.apache.uima.tools.cvd.CVD
 
 :end
\ No newline at end of file

Modified: incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCVD.sh
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCVD.sh?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCVD.sh (original)
+++ incubator/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCVD.sh Thu Oct 18 18:58:17 2012
@@ -16,8 +16,6 @@
 # specific language governing permissions and limitations
 # under the License.
 #
-#
-# Requires JAVA JDK 1.6+
 
 PRG="$0"
 while [ -h "$PRG" ]; do
@@ -35,4 +33,4 @@ PRGDIR=`dirname "$PRG"`
 [ -z "$CTAKES_HOME" ] && CTAKES_HOME=`cd "$PRGDIR/.." >/dev/null; pwd`
 
 cd $CTAKES_HOME
-java -cp $CTAKES_HOME/lib/*:$CTAKES_HOME/desc/ -Djava.util.logging.config.file=${UIMA_HOME}/Logger.properties -Xms512M -Xmx1024M org.apache.uima.tools.cvd.CVD
+java -cp $CTAKES_HOME/lib/*:$CTAKES_HOME/desc/ -Djava.util.logging.config.file=%CTAKES_HOME%/config/Logger.properties -Xms512M -Xmx1024M org.apache.uima.tools.cvd.CVD

Added: incubator/ctakes/trunk/ctakes-distribution/src/main/config/FileConsoleLogger.properties
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/src/main/config/FileConsoleLogger.properties?rev=1399782&view=auto
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/src/main/config/FileConsoleLogger.properties (added)
+++ incubator/ctakes/trunk/ctakes-distribution/src/main/config/FileConsoleLogger.properties Thu Oct 18 18:58:17 2012
@@ -0,0 +1,118 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+############################################################
+#   Default Logging Configuration File
+#
+# You can use a different file by specifying a filename
+# with the java.util.logging.config.file system property.
+# For example java -Djava.util.logging.config.file=myfile
+############################################################
+
+############################################################
+#   Global properties
+############################################################
+
+# "handlers" specifies a comma separated list of log Handler
+# classes.  These handlers will be installed during VM startup.
+# Note that these classes must be on the system classpath.
+# By default we only configure a ConsoleHandler, which will only
+# show messages at the INFO and above levels.
+
+handlers= java.util.logging.FileHandler, java.util.logging.ConsoleHandler
+#handlers= java.util.logging.ConsoleHandler
+#handlers= java.util.logging.FileHandler
+
+# Default global logging level.
+# This specifies which kinds of events are logged across
+# all loggers.  For any given facility this global level
+# can be overriden by a facility specific level
+# Note that every handler also has a separate level
+# setting to limit messages printed to that handler.
+# Possible log levels are:
+# SEVERE (highest value)
+# WARNING
+# INFO
+# CONFIG
+# FINE
+# FINER
+# FINEST (lowest value)
+# ALL
+
+.level= INFO
+
+############################################################
+# Handler specific properties.
+# Describes specific configuration info for Handlers.
+############################################################
+
+# default file output is in user's home directory.
+
+# file name pattern:
+# "/" the local pathname separator
+# "%t" the system temporary directory
+# "%h" the value of the "user.home" system property
+# "%g" the generation number to distinguish rotated logs
+# "%u" a unique number to resolve conflicts
+# "%%" translates to a single percent sign "%"
+#java.util.logging.FileHandler.pattern = %h/uima%u.log
+
+# output file name with pattern
+java.util.logging.FileHandler.pattern = uima.log
+
+# file limit is bytes
+#java.util.logging.FileHandler.limit = 10000000
+
+# specifies how many output files to cycle through
+#java.util.logging.FileHandler.count = 1
+
+# name of the character set encoding to use (defaults to the default platform encoding)
+#java.util.logging.FileHandler.encoding = UTF-8
+
+#specifies whether the FileHandler should append onto any existing files (defaults to false).
+java.util.logging.FileHandler.append = false
+
+
+############################################################
+# Formatting the output
+############################################################
+
+# define output formatter for each handler
+#java.util.logging.FileHandler.formatter = java.util.logging.SimpleFormatter
+java.util.logging.FileHandler.formatter = org.apache.uima.internal.util.UIMALogFormatter
+#java.util.logging.FileHandler.formatter = java.util.logging.XMLFormatter
+
+#java.util.logging.ConsoleHandler.formatter = java.util.logging.SimpleFormatter
+java.util.logging.ConsoleHandler.formatter = org.apache.uima.internal.util.UIMALogFormatter
+
+# set an additional message level for each handler
+java.util.logging.ConsoleHandler.level = ALL
+java.util.logging.FileHandler.level = ALL
+
+
+############################################################
+# Facility specific properties.
+# Provides extra control for each logger.
+############################################################
+
+# For example, set the com.xyz.foo logger to only log SEVERE messages:
+# com.xyz.foo.level = SEVERE
+# if you have a sample annotator in the package org.apache.uima.SampleAnnotator
+# you can set the log level by specifying:
+# org.apache.uima.SampleAnnotator.level = ALL

Added: incubator/ctakes/trunk/ctakes-distribution/src/main/config/Logger.properties
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-distribution/src/main/config/Logger.properties?rev=1399782&view=auto
==============================================================================
--- incubator/ctakes/trunk/ctakes-distribution/src/main/config/Logger.properties (added)
+++ incubator/ctakes/trunk/ctakes-distribution/src/main/config/Logger.properties Thu Oct 18 18:58:17 2012
@@ -0,0 +1,122 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+############################################################
+#  	Default Logging Configuration File
+#
+# You can use a different file by specifying a filename
+# with the java.util.logging.config.file system property.  
+# For example java -Djava.util.logging.config.file=myfile
+############################################################
+
+############################################################
+#  	Global properties
+############################################################
+
+# "handlers" specifies a comma separated list of log Handler 
+# classes.  These handlers will be installed during VM startup.
+# Note that these classes must be on the system classpath.
+# By default we only configure a ConsoleHandler, which will only
+# show messages at the INFO and above levels.
+
+#handlers= java.util.logging.FileHandler, java.util.logging.ConsoleHandler
+#handlers= java.util.logging.ConsoleHandler
+handlers= java.util.logging.FileHandler
+
+# Default global logging level.
+# This specifies which kinds of events are logged across
+# all loggers. For any given facility this global level
+# can be overriden by a facility specific level
+# Note that every handler also has a separate level
+# setting to limit messages printed to that handler.
+# Possible log levels are:
+# SEVERE (highest value)
+# WARNING
+# INFO
+# CONFIG
+# FINE
+# FINER
+# FINEST (lowest value)
+# ALL
+
+.level= INFO
+
+############################################################
+# Handler specific properties.
+# Describes specific configuration info for Handlers.
+############################################################
+
+# default file output is in user's home directory. 
+
+# file name pattern:
+# "/" the local pathname separator 
+# "%t" the system temporary directory 
+# "%h" the value of the "user.home" system property 
+# "%g" the generation number to distinguish rotated logs 
+# "%u" a unique number to resolve conflicts 
+# "%%" translates to a single percent sign "%" 
+#java.util.logging.FileHandler.pattern = %h/uima%u.log
+
+# output file name with pattern
+java.util.logging.FileHandler.pattern = uima.log
+
+# file limit is bytes
+#java.util.logging.FileHandler.limit = 10000000
+
+# specifies how many output files to cycle through 
+#java.util.logging.FileHandler.count = 1
+
+# name of the character set encoding to use (defaults to the default platform encoding)
+#java.util.logging.FileHandler.encoding = UTF-8
+
+#specifies whether the FileHandler should append onto any existing files (defaults to false). 
+java.util.logging.FileHandler.append = false
+
+
+############################################################
+# Formatting the output
+############################################################
+
+# define output formatter for each handler
+#java.util.logging.FileHandler.formatter = java.util.logging.SimpleFormatter
+java.util.logging.FileHandler.formatter = org.apache.uima.internal.util.UIMALogFormatter
+#java.util.logging.FileHandler.formatter = java.util.logging.XMLFormatter
+
+#java.util.logging.ConsoleHandler.formatter = java.util.logging.SimpleFormatter
+java.util.logging.ConsoleHandler.formatter = org.apache.uima.internal.util.UIMALogFormatter
+
+# set an additional message level for each handler
+java.util.logging.ConsoleHandler.level = ALL
+java.util.logging.FileHandler.level = ALL
+
+
+############################################################
+# Facility specific properties.
+# Provides extra control for each logger.
+############################################################
+
+# For example, set the com.xyz.foo logger to only log SEVERE messages:
+# com.xyz.foo.level = SEVERE
+
+# To set the logging level for an annotator class org.myorg.SampleAnnotator,
+# you can specify:
+# org.myorg.SampleAnnotator.level = ALL
+
+# To set the logging level for the UIMA framework itself, specify:
+# org.apache.uima.level = ALL

Modified: incubator/ctakes/trunk/ctakes-drug-ner/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	
 	

Modified: incubator/ctakes/trunk/ctakes-lvg/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-lvg/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-lvg/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-lvg/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -7,7 +28,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<dependencies>
 		<dependency>

Modified: incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/NegationAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/NegationAnnotator.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/NegationAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/NegationAnnotator.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/StatusAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/StatusAnnotator.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/StatusAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/StatusAnnotator.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/TestContextAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/TestContextAnnotator.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/TestContextAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/TestContextAnnotator.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/TokenizerAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/TokenizerAnnotator.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/TokenizerAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-ne-contexts/desc/test/TokenizerAnnotator.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-ne-contexts/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-ne-contexts/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-ne-contexts/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-ne-contexts/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<dependencies>
 		<dependency>

Modified: incubator/ctakes/trunk/ctakes-pad-term-spotter/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-pad-term-spotter/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-pad-term-spotter/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-pad-term-spotter/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 
 	<properties>

Modified: incubator/ctakes/trunk/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml (original)
+++ incubator/ctakes/trunk/ctakes-pad-term-spotter/src/main/resources/org/apache/ctakes/padtermspotter/types/TypeSystem.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<name>org.apache.ctakes.padtermspotter.types.TypeSystem</name>
 	<description>Represents Term and Location entities required for PAD

Modified: incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/NullAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/NullAnnotator.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/NullAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/NullAnnotator.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/OpenNLPPOSCollectionReader.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/OpenNLPPOSCollectionReader.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/OpenNLPPOSCollectionReader.xml (original)
+++ incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/OpenNLPPOSCollectionReader.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <collectionReaderDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<implementationName>org.apache.ctakes.postagger.OpenNLPPOSCollectionReader

Modified: incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/OpenNLPPOSCollectionReader2.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/OpenNLPPOSCollectionReader2.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/OpenNLPPOSCollectionReader2.xml (original)
+++ incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/OpenNLPPOSCollectionReader2.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <collectionReaderDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<implementationName>org.apache.ctakes.postagger.OpenNLPPOSCollectionReader

Modified: incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/POSTagger.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/POSTagger.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/POSTagger.xml (original)
+++ incubator/ctakes/trunk/ctakes-pos-tagger/desc/test/POSTagger.xml Thu Oct 18 18:58:17 2012
@@ -1,14 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (the "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
 	<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 	<primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-pos-tagger/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-pos-tagger/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-pos-tagger/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-pos-tagger/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<dependencies>
 		<dependency>

Modified: incubator/ctakes/trunk/ctakes-preprocessor/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-preprocessor/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-preprocessor/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-preprocessor/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<dependencies>
 		<dependency>

Modified: incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml (original)
+++ incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml Thu Oct 18 18:58:17 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-relation-extractor/pom.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-relation-extractor/pom.xml?rev=1399782&r1=1399781&r2=1399782&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-relation-extractor/pom.xml (original)
+++ incubator/ctakes/trunk/ctakes-relation-extractor/pom.xml Thu Oct 18 18:58:17 2012
@@ -1,3 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
@@ -6,7 +27,7 @@
 	<parent>
 		<groupId>org.apache.ctakes</groupId>
 		<artifactId>ctakes</artifactId>
-		<version>3.0.0-SNAPSHOT</version>
+		<version>3.0.0-incubating-SNAPSHOT</version>
 	</parent>
 	<dependencies>
 		<dependency>



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