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From chen...@apache.org
Subject svn commit: r1393784 - in /incubator/ctakes/trunk: ctakes-assertion/desc/ ctakes-assertion/resources/org/ ctakes-assertion/src/main/java/org/mitre/medfacts/i2b2/ ctakes-assertion/src/main/java/org/mitre/medfacts/uima/ ctakes-assertion/src/main/resource...
Date Wed, 03 Oct 2012 21:49:06 GMT
Author: chenpei
Date: Wed Oct  3 21:49:00 2012
New Revision: 1393784

URL: http://svn.apache.org/viewvc?rev=1393784&view=rev
Log:
Have maven detect the models. (moving models to src/main/resources)  will be automatically in the jar and classpath of the project.
First pass- updating the main projects first.

Added:
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/org/
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/org/apache/
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/models/
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/models/cue.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-assertion/resources/org/mitre/medfacts/resources/cue.model
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/models/featureFile11b
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-assertion/resources/org/mitre/medfacts/resources/featureFile11b
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/models/i2b2.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-assertion/resources/org/mitre/medfacts/resources/i2b2.model
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/models/pos.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-assertion/resources/org/mitre/medfacts/resources/pos.model
    incubator/ctakes/trunk/ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/models/scope.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-assertion/resources/org/mitre/medfacts/resources/scope.model
    incubator/ctakes/trunk/ctakes-chunker/src/main/resources/
    incubator/ctakes/trunk/ctakes-chunker/src/main/resources/org/
    incubator/ctakes/trunk/ctakes-chunker/src/main/resources/org/apache/
    incubator/ctakes/trunk/ctakes-chunker/src/main/resources/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-chunker/src/main/resources/org/apache/ctakes/chunker/
    incubator/ctakes/trunk/ctakes-chunker/src/main/resources/org/apache/ctakes/chunker/models/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-chunker/resources/models/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/resources/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/resources/org/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/resources/org/apache/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/resources/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency/parser/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency/parser/models/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency/parser/models/fastModel/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-constituency-parser/resources/fastModel/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency/parser/models/parsermodel/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-constituency-parser/resources/parsermodel/
    incubator/ctakes/trunk/ctakes-core/src/main/resources/
    incubator/ctakes/trunk/ctakes-core/src/main/resources/org/
    incubator/ctakes/trunk/ctakes-core/src/main/resources/org/apache/
    incubator/ctakes/trunk/ctakes-core/src/main/resources/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-core/src/main/resources/org/apache/ctakes/core/
    incubator/ctakes/trunk/ctakes-core/src/main/resources/org/apache/ctakes/core/cc/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-core/resources/cc/
    incubator/ctakes/trunk/ctakes-core/src/main/resources/org/apache/ctakes/core/eclipse/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-core/resources/eclipse/
    incubator/ctakes/trunk/ctakes-core/src/main/resources/org/apache/ctakes/core/log4j.properties
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-core/resources/log4j.properties
    incubator/ctakes/trunk/ctakes-core/src/main/resources/org/apache/ctakes/core/sentdetect/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-core/resources/sentdetect/
    incubator/ctakes/trunk/ctakes-core/src/main/resources/org/apache/ctakes/core/template.xml
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-core/resources/template.xml
    incubator/ctakes/trunk/ctakes-core/src/main/resources/org/apache/ctakes/core/tokenizer/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-core/resources/tokenizer/
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/anaphoricity.mayo.rbf.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/anaphoricity.mayo.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/anaphoricity.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/anaphoricity.model
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/anaphoricity.rbf.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/anaphoricity.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/coref.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/coref.model
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/dem.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/dem.model
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/demngramids.txt
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/demngramids.txt
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/frags.txt
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/frags.txt
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/ne.mayo.rbf.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/ne.mayo.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/ne.rbf.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/ne.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/ngramids.mayo.txt
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/ngramids.mayo.txt
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/ngramids.txt
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/ngramids.txt
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/pron.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/pron.model
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/pronngramids.mayo.txt
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/pronngramids.mayo.txt
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/pronngramids.txt
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/pronngramids.txt
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/pronoun.mayo.rbf.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/pronoun.mayo.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/pronoun.rbf.model
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/pronoun.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/models/stop.txt
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-coreference/resources/stop.txt
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/org/
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/org/apache/
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/org/apache/ctakes/dependency/
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/org/apache/ctakes/dependency/parser/
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/org/apache/ctakes/dependency/parser/models/
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dependency-parser/resources/clearparser_models.jar
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-dependency-parser/resources/dependency/
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-dependency-parser/resources/lemmatizer/
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-dependency-parser/resources/srl/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/LookupDesc.xml
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/LookupDesc_Db.xml
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/LookupDesc_csv_sample.xml
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/LookupDesc_example_using_CSV.xml
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/OrangeBook/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/OrangeBook/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/OrangeBook.zip
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/OrangeBook.zip
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/dictionary1.csv
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/dictionary1.csv
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/drug_index/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/drug_index/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/drug_index.zip
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/drug_index.zip
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/rxnorm_index/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/rxnorm_index/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/snomed-like_codes_sample/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/snomed-like_codes_sample/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/snomed-like_codes_sample.zip
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/snomed-like_codes_sample.zip
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/snomed-like_sample/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/snomed-like_sample/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/snomed-like_sample.zip
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/snomed-like_sample.zip
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/test.csv
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/test.csv
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/resources/org/apache/ctakes/dictionary/lookup/umls2011ab/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/umls2011ab/
    incubator/ctakes/trunk/ctakes-lvg/src/main/resources/
    incubator/ctakes/trunk/ctakes-lvg/src/main/resources/org/
    incubator/ctakes/trunk/ctakes-lvg/src/main/resources/org/apache/
    incubator/ctakes/trunk/ctakes-lvg/src/main/resources/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-lvg/src/main/resources/org/apache/ctakes/lvg/
    incubator/ctakes/trunk/ctakes-lvg/src/main/resources/org/apache/ctakes/lvg/2005_lemma.voc
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-lvg/resources/lvg/2005_lemma.voc
    incubator/ctakes/trunk/ctakes-lvg/src/main/resources/org/apache/ctakes/lvg/2005_norm.voc
      - copied unchanged from r1393521, incubator/ctakes/trunk/ctakes-lvg/resources/lvg/2005_norm.voc
    incubator/ctakes/trunk/ctakes-lvg/src/main/resources/org/apache/ctakes/lvg/data/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-lvg/resources/lvg/data/
    incubator/ctakes/trunk/ctakes-pos-tagger/src/main/resources/
    incubator/ctakes/trunk/ctakes-pos-tagger/src/main/resources/org/
    incubator/ctakes/trunk/ctakes-pos-tagger/src/main/resources/org/apache/
    incubator/ctakes/trunk/ctakes-pos-tagger/src/main/resources/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-pos-tagger/src/main/resources/org/apache/ctakes/postagger/
    incubator/ctakes/trunk/ctakes-pos-tagger/src/main/resources/org/apache/ctakes/postagger/models/
      - copied from r1393521, incubator/ctakes/trunk/ctakes-pos-tagger/resources/models/
Removed:
    incubator/ctakes/trunk/ctakes-assertion/resources/org/
    incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/i2b2/
    incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/
    incubator/ctakes/trunk/ctakes-chunker/resources/models/
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/edu/
    incubator/ctakes/trunk/ctakes-constituency-parser/resources/fastModel/
    incubator/ctakes/trunk/ctakes-constituency-parser/resources/parsermodel/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/edu/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/
    incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/edu/
    incubator/ctakes/trunk/ctakes-core/resources/cc/
    incubator/ctakes/trunk/ctakes-core/resources/eclipse/
    incubator/ctakes/trunk/ctakes-core/resources/log4j.properties
    incubator/ctakes/trunk/ctakes-core/resources/sentdetect/
    incubator/ctakes/trunk/ctakes-core/resources/template.xml
    incubator/ctakes/trunk/ctakes-core/resources/tokenizer/
    incubator/ctakes/trunk/ctakes-core/src/main/java/edu/
    incubator/ctakes/trunk/ctakes-coreference/resources/anaphoricity.mayo.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/resources/anaphoricity.model
    incubator/ctakes/trunk/ctakes-coreference/resources/anaphoricity.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/resources/coref.model
    incubator/ctakes/trunk/ctakes-coreference/resources/dem.model
    incubator/ctakes/trunk/ctakes-coreference/resources/demngramids.txt
    incubator/ctakes/trunk/ctakes-coreference/resources/frags.txt
    incubator/ctakes/trunk/ctakes-coreference/resources/ne.mayo.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/resources/ne.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/resources/ngramids.mayo.txt
    incubator/ctakes/trunk/ctakes-coreference/resources/ngramids.txt
    incubator/ctakes/trunk/ctakes-coreference/resources/pron.model
    incubator/ctakes/trunk/ctakes-coreference/resources/pronngramids.mayo.txt
    incubator/ctakes/trunk/ctakes-coreference/resources/pronngramids.txt
    incubator/ctakes/trunk/ctakes-coreference/resources/pronoun.mayo.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/resources/pronoun.rbf.model
    incubator/ctakes/trunk/ctakes-coreference/resources/stop.txt
    incubator/ctakes/trunk/ctakes-coreference/src/main/java/edu/
    incubator/ctakes/trunk/ctakes-coreference/src/main/java/org/chboston/
    incubator/ctakes/trunk/ctakes-dependency-parser/resources/clearparser_models.jar
    incubator/ctakes/trunk/ctakes-dependency-parser/resources/dependency/
    incubator/ctakes/trunk/ctakes-dependency-parser/resources/lemmatizer/
    incubator/ctakes/trunk/ctakes-dependency-parser/resources/srl/
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/edu/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/LookupDesc_example_using_CSV.xml
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/LookupDesc.xml
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/LookupDesc_Db.xml
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/LookupDesc_csv_sample.xml
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/OrangeBook/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/OrangeBook.zip
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/dictionary1.csv
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/drug_index/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/drug_index.zip
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/rxnorm_index/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/snomed-like_codes_sample/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/snomed-like_codes_sample.zip
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/snomed-like_sample/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/snomed-like_sample.zip
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/lookup/umls2011ab/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/resources/test.csv
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/
    incubator/ctakes/trunk/ctakes-lvg/resources/lvg/
    incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/
    incubator/ctakes/trunk/ctakes-pos-tagger/resources/models/
    incubator/ctakes/trunk/ctakes-pos-tagger/src/main/java/edu/
Modified:
    incubator/ctakes/trunk/ctakes-assertion/desc/assertionAnalysisEngine.xml
    incubator/ctakes/trunk/ctakes-chunker/desc/Chunker.xml
    incubator/ctakes/trunk/ctakes-chunker/desc/POSTagger.xml
    incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml
    incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml
    incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotatorVersion1.xml
    incubator/ctakes/trunk/ctakes-coreference/desc/MipacqMarkablePairGenerator.xml
    incubator/ctakes/trunk/ctakes-coreference/desc/MipacqSvmChainCreator.xml
    incubator/ctakes/trunk/ctakes-coreference/desc/MipacqSvmVectorCreator.xml
    incubator/ctakes/trunk/ctakes-coreference/desc/analysis_engine/MarkablePairPlaintextDBProcessor.xml
    incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserPlaintextAggregate.xml
    incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserTokenizedAggregate.xml
    incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserTokenizedInfPosAggregate.xml
    incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLPlaintextAggregate.xml
    incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLTokenizedAggregate.xml
    incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLTokenizedInfPosAggregate.xml
    incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/LvgBaseTokenAnnotator.xml
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/ClearParserDependencyParserAE.java
    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/ClearParserSemanticRoleLabelerAE.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml
    incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml
    incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceDetectorAnnotator.xml

Modified: incubator/ctakes/trunk/ctakes-assertion/desc/assertionAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/desc/assertionAnalysisEngine.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-assertion/desc/assertionAnalysisEngine.xml (original)
+++ incubator/ctakes/trunk/ctakes-assertion/desc/assertionAnalysisEngine.xml Wed Oct  3 21:49:00 2012
@@ -90,35 +90,35 @@
         <name>assertionModelResourceImpl</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:org/mitre/medfacts/resources/i2b2.model</fileUrl>
+          <fileUrl>file:org/apache/ctakes/assertion/models/i2b2.model</fileUrl>
         </fileResourceSpecifier>
       </externalResource>
       <externalResource>
         <name>scopeModelResourceImpl</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:org/mitre/medfacts/resources/scope.model</fileUrl>
+          <fileUrl>file:org/apache/ctakes/assertion/models/scope.model</fileUrl>
         </fileResourceSpecifier>
       </externalResource>
       <externalResource>
         <name>cueModelResourceImpl</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:org/mitre/medfacts/resources/cue.model</fileUrl>
+          <fileUrl>file:org/apache/ctakes/assertion/models/cue.model</fileUrl>
         </fileResourceSpecifier>
       </externalResource>
       <externalResource>
         <name>enabledFeaturesResourceImpl</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:org/mitre/medfacts/resources/featureFile11b</fileUrl>
+          <fileUrl>file:org/apache/ctakes/assertion/models/featureFile11b</fileUrl>
         </fileResourceSpecifier>
       </externalResource>
       <externalResource>
         <name>posModelResourceImpl</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:org/mitre/medfacts/resources/pos.model</fileUrl>
+          <fileUrl>file:org/apache/ctakes/assertion/models/pos.model</fileUrl>
         </fileResourceSpecifier>
       </externalResource>
     </externalResources>

Modified: incubator/ctakes/trunk/ctakes-chunker/desc/Chunker.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-chunker/desc/Chunker.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-chunker/desc/Chunker.xml (original)
+++ incubator/ctakes/trunk/ctakes-chunker/desc/Chunker.xml Wed Oct  3 21:49:00 2012
@@ -46,7 +46,7 @@
 <nameValuePair>
 <name>ChunkerModelFile</name>
 <value>
-<string>models/chunk-model.claims-1.5.zip</string>
+<string>org/apache/ctakes/chunker/models/chunk-model.claims-1.5.zip</string>
 </value>
 </nameValuePair>
 <nameValuePair>
@@ -98,7 +98,7 @@
 <name>ChunkerModelFile</name>
 <description></description>
 <fileResourceSpecifier>
-<fileUrl>file:models/chunk-model.claims-1.5.zip</fileUrl>
+<fileUrl>file:org/apache/ctakes/chunker/models/chunk-model.claims-1.5.zip</fileUrl>
 </fileResourceSpecifier>
 <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
 </externalResource>

Modified: incubator/ctakes/trunk/ctakes-chunker/desc/POSTagger.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-chunker/desc/POSTagger.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-chunker/desc/POSTagger.xml (original)
+++ incubator/ctakes/trunk/ctakes-chunker/desc/POSTagger.xml Wed Oct  3 21:49:00 2012
@@ -54,7 +54,7 @@
 <nameValuePair>
 <name>PosModelFile</name>
 <value>
-<string>models/mayo-pos.zip</string>
+<string>org/apache/ctakes/postagger/models/mayo-pos.zip</string>
 </value>
 </nameValuePair>
 <nameValuePair>
@@ -66,7 +66,7 @@
 <nameValuePair>
 <name>TagDictionary</name>
 <value>
-<string>models/tag.dictionary.txt</string>
+<string>org/apache/ctakes/postagger/models/tag.dictionary.txt</string>
 </value>
 </nameValuePair>
 </configurationParameterSettings>

Modified: incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml Wed Oct  3 21:49:00 2012
@@ -40,7 +40,7 @@
       <nameValuePair>
         <name>modelFilename</name>
         <value>
-          <string>fastModel</string>
+          <string>org/apache/ctakes/constituency/paraser/models/fastModel</string>
         </value>
       </nameValuePair>
     </configurationParameterSettings>

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml Wed Oct  3 21:49:00 2012
@@ -78,7 +78,7 @@
 <name>MaxentModelFile</name>
 <description></description>
 <fileResourceSpecifier>
-<fileUrl>file:sentdetect/sdmed.mod</fileUrl>
+<fileUrl>file:org/apache/ctakes/core/sentdetect/sdmed.mod</fileUrl>
 </fileResourceSpecifier>
 <implementationName>org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl</implementationName>
 </externalResource>

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotatorVersion1.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotatorVersion1.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotatorVersion1.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotatorVersion1.xml Wed Oct  3 21:49:00 2012
@@ -96,7 +96,7 @@
 <name>HyphFreqFile</name>
 <description></description>
 <fileResourceSpecifier>
-<fileUrl>file:tokenizer/hyphenated.txt</fileUrl>
+<fileUrl>file:org/apache/ctakes/core/tokenizer/hyphenated.txt</fileUrl>
 </fileResourceSpecifier>
 <implementationName>org.apache.ctakes.core.resource.StringIntegerMapResourceImpl</implementationName>
 </externalResource>

Modified: incubator/ctakes/trunk/ctakes-coreference/desc/MipacqMarkablePairGenerator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-coreference/desc/MipacqMarkablePairGenerator.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-coreference/desc/MipacqMarkablePairGenerator.xml (original)
+++ incubator/ctakes/trunk/ctakes-coreference/desc/MipacqMarkablePairGenerator.xml Wed Oct  3 21:49:00 2012
@@ -60,7 +60,7 @@
         <name>stopWordsFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:stop.txt</fileUrl>
+          <fileUrl>file:org/apache/ctakes/coreference/models/stop.txt</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
       </externalResource>

Modified: incubator/ctakes/trunk/ctakes-coreference/desc/MipacqSvmChainCreator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-coreference/desc/MipacqSvmChainCreator.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-coreference/desc/MipacqSvmChainCreator.xml (original)
+++ incubator/ctakes/trunk/ctakes-coreference/desc/MipacqSvmChainCreator.xml Wed Oct  3 21:49:00 2012
@@ -94,7 +94,7 @@
         <name>svmPronModelFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:pronoun.mayo.rbf.model</fileUrl>
+          <fileUrl>file:org/apache/ctakes/coreference/models/pronoun.mayo.rbf.model</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
       </externalResource>
@@ -102,7 +102,7 @@
         <name>svmDemModelFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:dem.model</fileUrl>
+          <fileUrl>file:org/apache/ctakes/coreference/models/dem.model</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
       </externalResource>
@@ -110,7 +110,7 @@
         <name>svmAnaphoricityModelFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:anaphoricity.mayo.rbf.model</fileUrl>
+          <fileUrl>file:org/apache/ctakes/coreference/models/anaphoricity.mayo.rbf.model</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
       </externalResource>
@@ -118,7 +118,7 @@
         <name>svmCorefModelFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:ne.mayo.rbf.model</fileUrl>
+          <fileUrl>file:org/apache/ctakes/coreference/models/ne.mayo.rbf.model</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
       </externalResource>
@@ -126,7 +126,7 @@
         <name>StopWordsFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:stop.txt</fileUrl>
+          <fileUrl>file:org/apache/ctakes/coreference/models/stop.txt</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
       </externalResource>
@@ -134,7 +134,7 @@
         <name>fragsFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:frags.txt</fileUrl>
+          <fileUrl>file:org/apache/ctakes/coreference/models/frags.txt</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
       </externalResource>

Modified: incubator/ctakes/trunk/ctakes-coreference/desc/MipacqSvmVectorCreator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-coreference/desc/MipacqSvmVectorCreator.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-coreference/desc/MipacqSvmVectorCreator.xml (original)
+++ incubator/ctakes/trunk/ctakes-coreference/desc/MipacqSvmVectorCreator.xml Wed Oct  3 21:49:00 2012
@@ -40,7 +40,7 @@
       <nameValuePair>
         <name>anaphoricityModelFilename</name>
         <value>
-          <string>anaphoricity.model</string>
+          <string>org/apache/ctakes/coreference/models/anaphoricity.model</string>
         </value>
       </nameValuePair>
     </configurationParameterSettings>
@@ -80,7 +80,7 @@
         <name>stopWordsFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:stop.txt</fileUrl>
+          <fileUrl>file:org/apache/ctakes/coreference/models/stop.txt</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
       </externalResource>

Modified: incubator/ctakes/trunk/ctakes-coreference/desc/analysis_engine/MarkablePairPlaintextDBProcessor.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-coreference/desc/analysis_engine/MarkablePairPlaintextDBProcessor.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-coreference/desc/analysis_engine/MarkablePairPlaintextDBProcessor.xml (original)
+++ incubator/ctakes/trunk/ctakes-coreference/desc/analysis_engine/MarkablePairPlaintextDBProcessor.xml Wed Oct  3 21:49:00 2012
@@ -160,7 +160,7 @@
         <name>stopWordsFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:stop.txt</fileUrl>
+          <fileUrl>file:org/apache/ctakes/coreference/models/stop.txt</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
       </externalResource>

Modified: incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserPlaintextAggregate.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserPlaintextAggregate.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserPlaintextAggregate.xml (original)
+++ incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserPlaintextAggregate.xml Wed Oct  3 21:49:00 2012
@@ -209,7 +209,7 @@
                         <nameValuePair>
                             <name>CmdCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_norm.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_norm.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -264,7 +264,7 @@
                         <nameValuePair>
                             <name>LemmaCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_lemma.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_lemma.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -320,7 +320,7 @@
                             <name>LvgCmdApi</name>
                             <description/>
                             <fileResourceSpecifier>
-                                <fileUrl>file:lvg/data/config/lvg.properties</fileUrl>
+                                <fileUrl>file:org/apache/ctakes/lvg/data/config/lvg.properties</fileUrl>
                             </fileResourceSpecifier>
                             <implementationName>org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl</implementationName>
                         </externalResource>
@@ -448,7 +448,7 @@
                             <name>MaxentModelFile</name>
                             <description/>
                             <fileResourceSpecifier>
-                                <fileUrl>file:sentdetect/sdmed.mod</fileUrl>
+                                <fileUrl>file:org/apache/ctakes/core/sentdetect/sdmed.mod</fileUrl>
                             </fileResourceSpecifier>
                             <implementationName>org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl</implementationName>
                         </externalResource>
@@ -539,7 +539,7 @@
                         <nameValuePair>
                             <name>PosModelFile</name>
                             <value>
-                                <string>models/mayo-pos.zip</string>
+                                <string>org/apache/ctakes/postagger/models/mayo-pos.zip</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -551,7 +551,7 @@
                         <nameValuePair>
                             <name>TagDictionary</name>
                             <value>
-                                <string>models/tag.dictionary.txt</string>
+                                <string>org/apache/ctakes/postagger/models/tag.dictionary.txt</string>
                             </value>
                         </nameValuePair>
                     </configurationParameterSettings>

Modified: incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserTokenizedAggregate.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserTokenizedAggregate.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserTokenizedAggregate.xml (original)
+++ incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserTokenizedAggregate.xml Wed Oct  3 21:49:00 2012
@@ -209,7 +209,7 @@
                         <nameValuePair>
                             <name>CmdCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_norm.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_norm.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -264,7 +264,7 @@
                         <nameValuePair>
                             <name>LemmaCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_lemma.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_lemma.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -320,7 +320,7 @@
                             <name>LvgCmdApi</name>
                             <description/>
                             <fileResourceSpecifier>
-                                <fileUrl>file:lvg/data/config/lvg.properties</fileUrl>
+                                <fileUrl>file:org/apache/ctakes/lvg/data/config/lvg.properties</fileUrl>
                             </fileResourceSpecifier>
                             <implementationName>org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl</implementationName>
                         </externalResource>

Modified: incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserTokenizedInfPosAggregate.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserTokenizedInfPosAggregate.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserTokenizedInfPosAggregate.xml (original)
+++ incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserDependencyParserTokenizedInfPosAggregate.xml Wed Oct  3 21:49:00 2012
@@ -209,7 +209,7 @@
                         <nameValuePair>
                             <name>CmdCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_norm.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_norm.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -264,7 +264,7 @@
                         <nameValuePair>
                             <name>LemmaCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_lemma.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_lemma.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -320,7 +320,7 @@
                             <name>LvgCmdApi</name>
                             <description/>
                             <fileResourceSpecifier>
-                                <fileUrl>file:lvg/data/config/lvg.properties</fileUrl>
+                                <fileUrl>file:org/apache/ctakes/lvg/data/config/lvg.properties</fileUrl>
                             </fileResourceSpecifier>
                             <implementationName>org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl</implementationName>
                         </externalResource>
@@ -411,7 +411,7 @@
                         <nameValuePair>
                             <name>PosModelFile</name>
                             <value>
-                                <string>models/mayo-pos.zip</string>
+                                <string>org/apache/ctakes/postagger/models/mayo-pos.zip</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -423,7 +423,7 @@
                         <nameValuePair>
                             <name>TagDictionary</name>
                             <value>
-                                <string>models/tag.dictionary.txt</string>
+                                <string>org/apache/ctakes/postagger/models/tag.dictionary.txt</string>
                             </value>
                         </nameValuePair>
                     </configurationParameterSettings>

Modified: incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLPlaintextAggregate.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLPlaintextAggregate.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLPlaintextAggregate.xml (original)
+++ incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLPlaintextAggregate.xml Wed Oct  3 21:49:00 2012
@@ -209,7 +209,7 @@
                         <nameValuePair>
                             <name>CmdCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_norm.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_norm.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -264,7 +264,7 @@
                         <nameValuePair>
                             <name>LemmaCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_lemma.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_lemma.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -320,7 +320,7 @@
                             <name>LvgCmdApi</name>
                             <description/>
                             <fileResourceSpecifier>
-                                <fileUrl>file:lvg/data/config/lvg.properties</fileUrl>
+                                <fileUrl>file:org/apache/ctakes/lvg/data/config/lvg.properties</fileUrl>
                             </fileResourceSpecifier>
                             <implementationName>org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl</implementationName>
                         </externalResource>
@@ -509,7 +509,7 @@
                             <name>MaxentModelFile</name>
                             <description/>
                             <fileResourceSpecifier>
-                                <fileUrl>file:sentdetect/sdmed.mod</fileUrl>
+                                <fileUrl>file:org/apache/ctakes/core/sentdetect/sdmed.mod</fileUrl>
                             </fileResourceSpecifier>
                             <implementationName>org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl</implementationName>
                         </externalResource>
@@ -600,7 +600,7 @@
                         <nameValuePair>
                             <name>PosModelFile</name>
                             <value>
-                                <string>models/mayo-pos.zip</string>
+                                <string>org/apache/ctakes/postagger/models/mayo-pos.zip</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -612,7 +612,7 @@
                         <nameValuePair>
                             <name>TagDictionary</name>
                             <value>
-                                <string>models/tag.dictionary.txt</string>
+                                <string>org/apache/ctakes/postagger/models/tag.dictionary.txt</string>
                             </value>
                         </nameValuePair>
                     </configurationParameterSettings>

Modified: incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLTokenizedAggregate.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLTokenizedAggregate.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLTokenizedAggregate.xml (original)
+++ incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLTokenizedAggregate.xml Wed Oct  3 21:49:00 2012
@@ -209,7 +209,7 @@
                         <nameValuePair>
                             <name>CmdCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_norm.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_norm.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -264,7 +264,7 @@
                         <nameValuePair>
                             <name>LemmaCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_lemma.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_lemma.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -320,7 +320,7 @@
                             <name>LvgCmdApi</name>
                             <description/>
                             <fileResourceSpecifier>
-                                <fileUrl>file:lvg/data/config/lvg.properties</fileUrl>
+                                <fileUrl>file:org/apache/ctakes/lvg/data/config/lvg.properties</fileUrl>
                             </fileResourceSpecifier>
                             <implementationName>org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl</implementationName>
                         </externalResource>

Modified: incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLTokenizedInfPosAggregate.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLTokenizedInfPosAggregate.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLTokenizedInfPosAggregate.xml (original)
+++ incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/ClearParserSRLTokenizedInfPosAggregate.xml Wed Oct  3 21:49:00 2012
@@ -209,7 +209,7 @@
                         <nameValuePair>
                             <name>CmdCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_norm.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_norm.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -264,7 +264,7 @@
                         <nameValuePair>
                             <name>LemmaCacheFileLocation</name>
                             <value>
-                                <string>/ctakes-lvg/2005_lemma.voc</string>
+                                <string>org/apache/ctakes/lvg/2005_lemma.voc</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -320,7 +320,7 @@
                             <name>LvgCmdApi</name>
                             <description/>
                             <fileResourceSpecifier>
-                                <fileUrl>file:lvg/data/config/lvg.properties</fileUrl>
+                                <fileUrl>file:org/apache/ctakes/lvg/data/config/lvg.properties</fileUrl>
                             </fileResourceSpecifier>
                             <implementationName>org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl</implementationName>
                         </externalResource>
@@ -472,7 +472,7 @@
                         <nameValuePair>
                             <name>PosModelFile</name>
                             <value>
-                                <string>models/mayo-pos.zip</string>
+                                <string>org/apache/ctakes/postagger/models/mayo-pos.zip</string>
                             </value>
                         </nameValuePair>
                         <nameValuePair>
@@ -484,7 +484,7 @@
                         <nameValuePair>
                             <name>TagDictionary</name>
                             <value>
-                                <string>models/tag.dictionary.txt</string>
+                                <string>org/apache/ctakes/postagger/models/tag.dictionary.txt</string>
                             </value>
                         </nameValuePair>
                     </configurationParameterSettings>

Modified: incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/LvgBaseTokenAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/LvgBaseTokenAnnotator.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/LvgBaseTokenAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-dependency-parser/desc/analysis_engine/LvgBaseTokenAnnotator.xml Wed Oct  3 21:49:00 2012
@@ -130,7 +130,7 @@
       <nameValuePair>
         <name>CmdCacheFileLocation</name>
         <value>
-          <string>/ctakes-lvg/2005_norm.voc</string>
+          <string>org/apache/ctakes/lvg/2005_norm.voc</string>
         </value>
       </nameValuePair>
       <nameValuePair>
@@ -185,7 +185,7 @@
       <nameValuePair>
         <name>LemmaCacheFileLocation</name>
         <value>
-          <string>/ctakes-lvg/2005_lemma.voc</string>
+          <string>org/apache/ctakes/lvg/2005_lemma.voc</string>
         </value>
       </nameValuePair>
       <nameValuePair>
@@ -244,7 +244,7 @@
         <name>LvgCmdApi</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:lvg/data/config/lvg.properties</fileUrl>
+          <fileUrl>file:org/apache/ctakes/lvg/data/config/lvg.properties</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl</implementationName>
       </externalResource>

Modified: incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/ClearParserDependencyParserAE.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/ClearParserDependencyParserAE.java?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/ClearParserDependencyParserAE.java (original)
+++ incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/ClearParserDependencyParserAE.java Wed Oct  3 21:49:00 2012
@@ -72,9 +72,9 @@ public class ClearParserDependencyParser
 	public Logger logger = Logger.getLogger(getClass().getName());
 	
 	// Default model values
-	public static final String DEFAULT_MODEL_FILE_NAME = "/dependency/conll-2009-dev-shift-pop.jar";
+	public static final String DEFAULT_MODEL_FILE_NAME = "org/apache/ctakes/dependency/parser/models/dependency/conll-2009-dev-shift-pop.jar";
 
-	public static final String ENG_LEMMATIZER_DATA_FILE = "/lemmatizer/wordnet-3.0-lemma-data.jar";
+	public static final String ENG_LEMMATIZER_DATA_FILE = "org/apache/ctakes/dependency/parser/models/lemmatizer/wordnet-3.0-lemma-data.jar";
 
 	public static final String DEFAULT_PARSER_ALGORITHM_NAME = AbstractDepParser.ALG_SHIFT_POP;
 

Modified: incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/ClearParserSemanticRoleLabelerAE.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/ClearParserSemanticRoleLabelerAE.java?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/ClearParserSemanticRoleLabelerAE.java (original)
+++ incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/ClearParserSemanticRoleLabelerAE.java Wed Oct  3 21:49:00 2012
@@ -82,9 +82,9 @@ public class ClearParserSemanticRoleLabe
 
   public Logger logger = Logger.getLogger(getClass().getName());
   
-  public static final String DEFAULT_MODEL_FILE_NAME = "/srl/en_srl_ontonotes.jar";
+  public static final String DEFAULT_MODEL_FILE_NAME = "org/apache/ctakes/dependency/parser/models/srl/en_srl_ontonotes.jar";
   
-  public static final String ENG_LEMMATIZER_DATA_FILE = "/lemmatizer/wordnet-3.0-lemma-data.jar";
+  public static final String ENG_LEMMATIZER_DATA_FILE = "org/apache/ctakes/dependency/parser/models/lemmatizer/wordnet-3.0-lemma-data.jar";
   
 
   public static final String PARAM_PARSER_MODEL_FILE_NAME = "ParserModelFileName";

Modified: incubator/ctakes/trunk/ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml (original)
+++ incubator/ctakes/trunk/ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml Wed Oct  3 21:49:00 2012
@@ -158,7 +158,7 @@
         <name>LookupDescriptorFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:lookup/LookupDesc_Db.xml</fileUrl>
+          <fileUrl>file:org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
       </externalResource>
@@ -205,7 +205,7 @@
               <nameValuePair>
                 <name>URL</name>
                 <value>
-                  <string>jdbc:hsqldb:file:../ctakes-dictionary-lookup/resources/lookup/umls2011ab/umls</string>
+                  <string>jdbc:hsqldb:res:org/apache/ctakes/dictionary/lookup/umls2011ab/umls</string>
                 </value>
               </nameValuePair>
               <nameValuePair>
@@ -256,7 +256,7 @@
               <nameValuePair>
                 <name>IndexDirectory</name>
                 <value>
-                  <string>lookup/rxnorm_index</string>
+                  <string>org/apache/ctakes/dictionary/lookup/rxnorm_index</string>
                 </value>
               </nameValuePair>
             </configurationParameterSettings>
@@ -295,7 +295,7 @@
               <nameValuePair>
                 <name>IndexDirectory</name>
                 <value>
-                  <string>lookup/OrangeBook</string>
+                  <string>org/apache/ctakes/dictionary/lookup/OrangeBook</string>
                 </value>
               </nameValuePair>
             </configurationParameterSettings>

Modified: incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml Wed Oct  3 21:49:00 2012
@@ -130,7 +130,7 @@
 <nameValuePair>
 <name>CmdCacheFileLocation</name>
 <value>
-<string>/ctakes-lvg/2005_norm.voc</string>
+<string>org/apache/ctakes/lvg/2005_norm.voc</string>
 </value>
 </nameValuePair>
 <nameValuePair>

Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceDetectorAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceDetectorAnnotator.xml?rev=1393784&r1=1393783&r2=1393784&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceDetectorAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceDetectorAnnotator.xml Wed Oct  3 21:49:00 2012
@@ -78,7 +78,7 @@
         <name>MaxentModelFile</name>
         <description/>
         <fileResourceSpecifier>
-          <fileUrl>file:sentdetect/sdmed.mod</fileUrl>
+          <fileUrl>file:org/apache/ctakes/core/sentdetect/sdmed.mod</fileUrl>
         </fileResourceSpecifier>
         <implementationName>org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl</implementationName>
       </externalResource>



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