Return-Path: X-Original-To: apmail-incubator-ctakes-commits-archive@minotaur.apache.org Delivered-To: apmail-incubator-ctakes-commits-archive@minotaur.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id F31F3DFA0 for ; Tue, 25 Sep 2012 21:07:09 +0000 (UTC) Received: (qmail 9744 invoked by uid 500); 25 Sep 2012 21:07:09 -0000 Delivered-To: apmail-incubator-ctakes-commits-archive@incubator.apache.org Received: (qmail 9722 invoked by uid 500); 25 Sep 2012 21:07:09 -0000 Mailing-List: contact ctakes-commits-help@incubator.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: ctakes-dev@incubator.apache.org Delivered-To: mailing list ctakes-commits@incubator.apache.org Received: (qmail 9715 invoked by uid 99); 25 Sep 2012 21:07:09 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 25 Sep 2012 21:07:09 +0000 X-ASF-Spam-Status: No, hits=-2000.0 required=5.0 tests=ALL_TRUSTED X-Spam-Check-By: apache.org Received: from [140.211.11.4] (HELO eris.apache.org) (140.211.11.4) by apache.org (qpsmtpd/0.29) with ESMTP; Tue, 25 Sep 2012 21:07:05 +0000 Received: from eris.apache.org (localhost [127.0.0.1]) by eris.apache.org (Postfix) with ESMTP id 4121B23888CD; Tue, 25 Sep 2012 21:06:22 +0000 (UTC) Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Subject: svn commit: r1390134 [1/2] - in /incubator/ctakes/trunk: ./ ctakes-assertion/ ctakes-assertion/desc/ ctakes-assertion/lib/ ctakes-assertion/metadata/ ctakes-assertion/src/main/java/edu/mayo/bmi/attributes/ ctakes-assertion/src/main/java/edu/mayo/bmi/ui... Date: Tue, 25 Sep 2012 21:06:20 -0000 To: ctakes-commits@incubator.apache.org From: chenpei@apache.org X-Mailer: svnmailer-1.0.8-patched Message-Id: <20120925210622.4121B23888CD@eris.apache.org> X-Virus-Checked: Checked by ClamAV on apache.org Author: chenpei Date: Tue Sep 25 21:06:18 2012 New Revision: 1390134 URL: http://svn.apache.org/viewvc?rev=1390134&view=rev Log: assertion module was not in trunk before... Adding to trunk applying the same namespace changes. adding the dependencies to the pom.xml and pull it off maven central instead of local /lib where possible. Added: incubator/ctakes/trunk/ctakes-assertion/pom.xml incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/GenericAttributeAnalysisEngine.java - copied, changed from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/uima/attributes/GenericAttributeAnalysisEngine.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/SubjectAttributeAnalysisEngine.java - copied, changed from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/uima/attributes/SubjectAttributeAnalysisEngine.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/generic/ - copied from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/attributes/generic/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/subject/ - copied from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/attributes/subject/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/AssertionAnalysisEngine.java - copied, changed from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/AssertionAnalysisEngine.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/CasIndexer.java - copied, changed from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/CasIndexer.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConceptConverterAnalysisEngine.java - copied, changed from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConceptConverterAnalysisEngine.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConceptLookup.java - copied, changed from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConceptLookup.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConvertXMIAssertionsToi2b2Format.java - copied, changed from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConvertXMIAssertionsToi2b2Format.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/Converti2b2AnnotationsToCTAKES.java - copied, changed from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/Converti2b2AnnotationsToCTAKES.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/ - copied from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/cleartk/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/ - copied from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/i2b2/api/ctakes/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/types/ - copied from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/types/ Removed: incubator/ctakes/trunk/ctakes-assertion/lib/cleartk-eval-0.8.1.jar incubator/ctakes/trunk/ctakes-assertion/lib/cleartk-examples-0.6.0.jar incubator/ctakes/trunk/ctakes-assertion/lib/cleartk-ml-1.0.1.jar incubator/ctakes/trunk/ctakes-assertion/lib/cleartk-ml-opennlp-maxent-1.0.2.jar incubator/ctakes/trunk/ctakes-assertion/lib/cleartk-test-util-1.0.1.jar incubator/ctakes/trunk/ctakes-assertion/lib/cleartk-type-system-1.0.0.jar incubator/ctakes/trunk/ctakes-assertion/lib/cleartk-util-0.8.1.jar incubator/ctakes/trunk/ctakes-assertion/lib/commons-cli-1.2.jar incubator/ctakes/trunk/ctakes-assertion/lib/commons-lang-2.6.jar incubator/ctakes/trunk/ctakes-assertion/lib/jackson-core-asl-1.5.0.jar incubator/ctakes/trunk/ctakes-assertion/lib/jackson-mapper-asl-1.5.0.jar incubator/ctakes/trunk/ctakes-assertion/lib/opennlp-maxent-3.0.2-incubating.jar incubator/ctakes/trunk/ctakes-assertion/lib/sbinary_2.9.0-0.4.0.jar incubator/ctakes/trunk/ctakes-assertion/lib/scala-library-2.9.0.jar incubator/ctakes/trunk/ctakes-assertion/lib/uimafit-1.2.0.jar incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/attributes/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/uima/attributes/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/i2b2/api/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/types/ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ Modified: incubator/ctakes/trunk/ctakes-assertion/.classpath incubator/ctakes/trunk/ctakes-assertion/.project incubator/ctakes/trunk/ctakes-assertion/desc/AssertionMiniPipelineAnalysisEngine.xml incubator/ctakes/trunk/ctakes-assertion/desc/GenericAttributeAnalysisEngine.xml incubator/ctakes/trunk/ctakes-assertion/desc/SubjectAttributeAnalysisEngine.xml incubator/ctakes/trunk/ctakes-assertion/desc/assertionAnalysisEngine.xml incubator/ctakes/trunk/ctakes-assertion/desc/conceptConverterAnalysisEngine.xml incubator/ctakes/trunk/ctakes-assertion/desc/medfactsTypeSystem.xml incubator/ctakes/trunk/ctakes-assertion/metadata/install.xml incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/generic/GenericAttributeClassifier.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/subject/SubjectAttributeClassifier.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionCleartkAnalysisEngine.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/CharacterOffsetToLineTokenConverterCtakesImpl.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/ConstraintConstructor.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/ConstraintConstructorFindContainedBy.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/ConstraintConstructorFindContainedWithin.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/SingleDocumentProcessorCtakes.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/types/Assertion.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/types/Assertion_Type.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/types/Concept.java incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/types/Concept_Type.java incubator/ctakes/trunk/ctakes-clinical-pipeline/pom.xml incubator/ctakes/trunk/ctakes-clinical-pipeline/resources/launch/UIMA_CVD--clinical_documents_pipeline.launch incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/DependencyUtility.java incubator/ctakes/trunk/pom.xml Modified: incubator/ctakes/trunk/ctakes-assertion/.classpath URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/.classpath?rev=1390134&r1=1390133&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/.classpath (original) +++ incubator/ctakes/trunk/ctakes-assertion/.classpath Tue Sep 25 21:06:18 2012 @@ -1,30 +1,8 @@ - - - - - - - - - - - - - - - + + + - - - - - - - - - - - + Modified: incubator/ctakes/trunk/ctakes-assertion/.project URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/.project?rev=1390134&r1=1390133&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/.project (original) +++ incubator/ctakes/trunk/ctakes-assertion/.project Tue Sep 25 21:06:18 2012 @@ -1,17 +1,23 @@ - - - assertion - - - - - - org.eclipse.jdt.core.javabuilder - - - - - - org.eclipse.jdt.core.javanature - - + + + ctakes-assertion + + + + + + org.eclipse.jdt.core.javabuilder + + + + + org.eclipse.m2e.core.maven2Builder + + + + + + org.eclipse.m2e.core.maven2Nature + org.eclipse.jdt.core.javanature + + Modified: incubator/ctakes/trunk/ctakes-assertion/desc/AssertionMiniPipelineAnalysisEngine.xml URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/desc/AssertionMiniPipelineAnalysisEngine.xml?rev=1390134&r1=1390133&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/desc/AssertionMiniPipelineAnalysisEngine.xml (original) +++ incubator/ctakes/trunk/ctakes-assertion/desc/AssertionMiniPipelineAnalysisEngine.xml Tue Sep 25 21:06:18 2012 @@ -1,4 +1,24 @@ + org.apache.uima.java false @@ -35,13 +55,13 @@ - edu.mayo.bmi.uima.core.type.refsem.UmlsConcept - edu.mayo.bmi.uima.core.type.refsem.OntologyConcept - edu.mayo.bmi.uima.core.type.textsem.EntityMention - edu.mayo.bmi.uima.core.type.syntax.BaseToken + org.apache.ctakes.typesystem.type.refsem.UmlsConcept + org.apache.ctakes.typesystem.type.refsem.OntologyConcept + org.apache.ctakes.typesystem.type.textsem.EntityMention + org.apache.ctakes.typesystem.type.syntax.BaseToken - edu.mayo.bmi.uima.core.type.textsem.EntityMention + org.apache.ctakes.typesystem.type.textsem.EntityMention Modified: incubator/ctakes/trunk/ctakes-assertion/desc/GenericAttributeAnalysisEngine.xml URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/desc/GenericAttributeAnalysisEngine.xml?rev=1390134&r1=1390133&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/desc/GenericAttributeAnalysisEngine.xml (original) +++ incubator/ctakes/trunk/ctakes-assertion/desc/GenericAttributeAnalysisEngine.xml Tue Sep 25 21:06:18 2012 @@ -1,8 +1,28 @@ + org.apache.uima.java true - edu.mayo.bmi.uima.attributes.GenericAttributeAnalysisEngine + org.apache.ctakes.assertion.attributes.GenericAttributeAnalysisEngine GenericAttributeAnalysisEngine Assigns the generic of each IdentifiedAnnotation in the text. Requires dependency parses upstream. @@ -12,7 +32,7 @@ - + @@ -20,11 +40,11 @@ - edu.mayo.bmi.uima.core.type.textsem.EntityMention - edu.mayo.bmi.uima.core.type.syntax.BaseToken + org.apache.ctakes.typesystem.type.textsem.EntityMention + org.apache.ctakes.typesystem.type.syntax.BaseToken - edu.mayo.bmi.uima.core.type.textsem.EntityMention + org.apache.ctakes.typesystem.type.textsem.EntityMention Modified: incubator/ctakes/trunk/ctakes-assertion/desc/SubjectAttributeAnalysisEngine.xml URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/desc/SubjectAttributeAnalysisEngine.xml?rev=1390134&r1=1390133&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/desc/SubjectAttributeAnalysisEngine.xml (original) +++ incubator/ctakes/trunk/ctakes-assertion/desc/SubjectAttributeAnalysisEngine.xml Tue Sep 25 21:06:18 2012 @@ -1,8 +1,28 @@ + org.apache.uima.java true - edu.mayo.bmi.uima.attributes.SubjectAttributeAnalysisEngine + org.apache.ctakes.assertion.attributes.SubjectAttributeAnalysisEngine SubjectAttributeAnalysisEngine Assigns the subject of each IdentifiedAnnotation in the text. Requires dependency parses and semantic role labels upstream. It is also preferable to find the generic attribute before finding subject. @@ -12,7 +32,7 @@ - + @@ -20,11 +40,11 @@ - edu.mayo.bmi.uima.core.type.textsem.EntityMention - edu.mayo.bmi.uima.core.type.syntax.BaseToken + org.apache.ctakes.typesystem.type.textsem.EntityMention + org.apache.ctakes.typesystem.type.syntax.BaseToken - edu.mayo.bmi.uima.core.type.textsem.EntityMention + org.apache.ctakes.typesystem.type.textsem.EntityMention Modified: incubator/ctakes/trunk/ctakes-assertion/desc/assertionAnalysisEngine.xml URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/desc/assertionAnalysisEngine.xml?rev=1390134&r1=1390133&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/desc/assertionAnalysisEngine.xml (original) +++ incubator/ctakes/trunk/ctakes-assertion/desc/assertionAnalysisEngine.xml Tue Sep 25 21:06:18 2012 @@ -1,8 +1,28 @@ + org.apache.uima.java true - org.mitre.medfacts.uima.assertion.AssertionAnalysisEngine + org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine assertionAnalysisEngine @@ -13,7 +33,7 @@ - + @@ -21,12 +41,12 @@ - edu.mayo.bmi.uima.core.type.textsem.EntityMention - org.mitre.medfacts.types.Concept - edu.mayo.bmi.uima.core.type.syntax.BaseToken + org.apache.ctakes.typesystem.type.textsem.EntityMention + org.apache.ctakes.assertion.medfacts.types.Concept + org.apache.ctakes.typesystem.type.syntax.BaseToken - edu.mayo.bmi.uima.core.type.textsem.EntityMention + org.apache.ctakes.typesystem.type.textsem.EntityMention Modified: incubator/ctakes/trunk/ctakes-assertion/desc/conceptConverterAnalysisEngine.xml URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/desc/conceptConverterAnalysisEngine.xml?rev=1390134&r1=1390133&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/desc/conceptConverterAnalysisEngine.xml (original) +++ incubator/ctakes/trunk/ctakes-assertion/desc/conceptConverterAnalysisEngine.xml Tue Sep 25 21:06:18 2012 @@ -1,8 +1,28 @@ + org.apache.uima.java true - org.mitre.medfacts.uima.assertion.ConceptConverterAnalysisEngine + org.apache.ctakes.assertion.medfacts.ConceptConverterAnalysisEngine conceptConverterAnalysisEngine @@ -13,7 +33,7 @@ - + @@ -21,13 +41,13 @@ - edu.mayo.bmi.uima.core.type.refsem.UmlsConcept - edu.mayo.bmi.uima.core.type.refsem.OntologyConcept - edu.mayo.bmi.uima.core.type.textsem.EntityMention - edu.mayo.bmi.uima.core.type.syntax.BaseToken + org.apache.ctakes.typesystem.type.refsem.UmlsConcept + org.apache.ctakes.typesystem.type.refsem.OntologyConcept + org.apache.ctakes.typesystem.type.textsem.EntityMention + org.apache.ctakes.typesystem.type.syntax.BaseToken - org.mitre.medfacts.types.Concept + org.apache.ctakes.assertion.medfacts.types.Concept Modified: incubator/ctakes/trunk/ctakes-assertion/desc/medfactsTypeSystem.xml URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/desc/medfactsTypeSystem.xml?rev=1390134&r1=1390133&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/desc/medfactsTypeSystem.xml (original) +++ incubator/ctakes/trunk/ctakes-assertion/desc/medfactsTypeSystem.xml Tue Sep 25 21:06:18 2012 @@ -1,4 +1,24 @@ + medfactsTypeSystem @@ -6,7 +26,7 @@ - org.mitre.medfacts.types.Concept + org.apache.ctakes.assertion.medfacts.types.Concept uima.tcas.Annotation @@ -33,7 +53,7 @@ - org.mitre.medfacts.types.Assertion + org.apache.ctakes.assertion.medfacts.types.Assertion uima.tcas.Annotation @@ -45,7 +65,7 @@ associatedConcept - org.mitre.medfacts.types.Concept + org.apache.ctakes.assertion.medfacts.types.Concept Modified: incubator/ctakes/trunk/ctakes-assertion/metadata/install.xml URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/metadata/install.xml?rev=1390134&r1=1390133&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/metadata/install.xml (original) +++ incubator/ctakes/trunk/ctakes-assertion/metadata/install.xml Tue Sep 25 21:06:18 2012 @@ -1,4 +1,24 @@ + Windows and Linux Added: incubator/ctakes/trunk/ctakes-assertion/pom.xml URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/pom.xml?rev=1390134&view=auto ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/pom.xml (added) +++ incubator/ctakes/trunk/ctakes-assertion/pom.xml Tue Sep 25 21:06:18 2012 @@ -0,0 +1,182 @@ + + 4.0.0 + ctakes-assertion + Apache cTAKES Assertion + + org.apache.ctakes + ctakes + 3.0.0-SNAPSHOT + + + desc/medfactsTypeSystem.xml + + + + org.apache.ctakes + ctakes-type-system + + + org.apache.ctakes + ctakes-core + + + org.apache.ctakes + ctakes-utils + + + org.apache.ctakes + ctakes-pos-tagger + + + org.apache.ctakes + ctakes-dependency-parser + + + org.cleartk + cleartk-chunker + + + org.cleartk + cleartk-ml + + + org.cleartk + cleartk-ml-libsvm + + + org.cleartk + cleartk-ml-opennlp-maxent + + + org.cleartk + cleartk-util + + + org.cleartk + cleartk-test-util + + + args4j + args4j + + + commons-io + commons-io + + + commons-lang + commons-lang + + + commons-logging + commons-logging + + + com.google.guava + guava + + + commons-cli + commons-cli + + + com.carrotsearch + hppc + + + + + jdom + jdom + + + + log4j + log4j + + + org.apache.opennlp + opennlp-maxent + + + org.apache.opennlp + opennlp-tools + + + org.apache.lucene + lucene-core + + + tw.edu.ntu.csie + libsvm + + + + org.springframework + spring-core + + + + junit + junit + + + org.uimafit + uimafit + + + + org.codehaus.jackson + jackson-core-asl + 1.5.0 + + + org.codehaus.jackson + jackson-mapper-asl + 1.5.0 + + + + org.scala-lang + scala-library + 2.9.0 + + + org.scala-tools.sbinary + sbinary_2.9.0 + 0.4.0 + + + + + org.mitre.medfacts + medfacts-i2b2 + 1.2 + system + ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar + + + org.mitre.medfacts + medfacts-zoner + 1.1 + system + ${project.basedir}/lib/med-facts-zoner-1.1.jar + + + org.mitre.jcarafe.core + jcarafe.core + 2.9.1 + system + ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar + + + org.mitre.jcarafe.ext + jcarafe.ext + 2.9.1 + system + ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar + + + Copied: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/GenericAttributeAnalysisEngine.java (from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/uima/attributes/GenericAttributeAnalysisEngine.java) URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/GenericAttributeAnalysisEngine.java?p2=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/GenericAttributeAnalysisEngine.java&p1=incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/uima/attributes/GenericAttributeAnalysisEngine.java&r1=1389906&r2=1390134&rev=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/uima/attributes/GenericAttributeAnalysisEngine.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/GenericAttributeAnalysisEngine.java Tue Sep 25 21:06:18 2012 @@ -1,27 +1,22 @@ -/* - * Copyright: (c) 2012 Mayo Foundation for Medical Education and - * Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the - * triple-shield Mayo logo are trademarks and service marks of MFMER. - * - * Except as contained in the copyright notice above, or as used to identify - * MFMER as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -package edu.mayo.bmi.uima.attributes; +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ +package org.apache.ctakes.assertion.attributes; import org.apache.log4j.Logger; import org.apache.uima.UimaContext; @@ -31,8 +26,8 @@ import org.apache.uima.resource.Resource import org.uimafit.component.JCasAnnotator_ImplBase; import org.uimafit.util.JCasUtil; -import edu.mayo.bmi.attributes.generic.GenericAttributeClassifier; -import edu.mayo.bmi.uima.core.type.textsem.IdentifiedAnnotation; +import org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier; +import org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation; /** *
Copied: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/SubjectAttributeAnalysisEngine.java (from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/uima/attributes/SubjectAttributeAnalysisEngine.java) URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/SubjectAttributeAnalysisEngine.java?p2=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/SubjectAttributeAnalysisEngine.java&p1=incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/uima/attributes/SubjectAttributeAnalysisEngine.java&r1=1389906&r2=1390134&rev=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/edu/mayo/bmi/uima/attributes/SubjectAttributeAnalysisEngine.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/SubjectAttributeAnalysisEngine.java Tue Sep 25 21:06:18 2012 @@ -1,27 +1,22 @@ -/* - * Copyright: (c) 2012 Mayo Foundation for Medical Education and - * Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the - * triple-shield Mayo logo are trademarks and service marks of MFMER. - * - * Except as contained in the copyright notice above, or as used to identify - * MFMER as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -package edu.mayo.bmi.uima.attributes; +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ +package org.apache.ctakes.assertion.attributes; import org.apache.log4j.Logger; import org.apache.uima.UimaContext; @@ -31,8 +26,8 @@ import org.apache.uima.resource.Resource import org.uimafit.component.JCasAnnotator_ImplBase; import org.uimafit.util.JCasUtil; -import edu.mayo.bmi.attributes.subject.SubjectAttributeClassifier; -import edu.mayo.bmi.uima.core.type.textsem.IdentifiedAnnotation; +import org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier; +import org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation; /** *
Modified: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/generic/GenericAttributeClassifier.java URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/generic/GenericAttributeClassifier.java?rev=1390134&r1=1389906&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/generic/GenericAttributeClassifier.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/generic/GenericAttributeClassifier.java Tue Sep 25 21:06:18 2012 @@ -1,27 +1,22 @@ -/* - * Copyright: (c) 2012 Mayo Foundation for Medical Education and - * Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the - * triple-shield Mayo logo are trademarks and service marks of MFMER. +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 * - * Except as contained in the copyright notice above, or as used to identify - * MFMER as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. */ -package edu.mayo.bmi.attributes.generic; +package org.apache.ctakes.assertion.attributes.generic; import java.io.IOException; import java.util.ArrayList; @@ -37,15 +32,15 @@ import org.apache.uima.jcas.tcas.Annotat import org.uimafit.util.JCasUtil; import org.xml.sax.SAXException; -import edu.mayo.bmi.nlp.parser.util.DependencyUtility; -import edu.mayo.bmi.uima.core.type.constants.CONST; -import edu.mayo.bmi.uima.core.type.syntax.BaseToken; -import edu.mayo.bmi.uima.core.type.syntax.Chunk; -import edu.mayo.bmi.uima.core.type.syntax.ConllDependencyNode; -import edu.mayo.bmi.uima.core.type.textsem.EntityMention; -import edu.mayo.bmi.uima.core.type.textsem.IdentifiedAnnotation; -import edu.mayo.bmi.uima.core.type.textsem.SemanticArgument; -import edu.mayo.bmi.uima.core.type.textspan.Sentence; +import org.apache.ctakes.dependency.parser.util.DependencyUtility; +import org.apache.ctakes.typesystem.type.constants.CONST; +import org.apache.ctakes.typesystem.type.syntax.BaseToken; +import org.apache.ctakes.typesystem.type.syntax.Chunk; +import org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode; +import org.apache.ctakes.typesystem.type.textsem.EntityMention; +import org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation; +import org.apache.ctakes.typesystem.type.textsem.SemanticArgument; +import org.apache.ctakes.typesystem.type.textspan.Sentence; /** Modified: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/subject/SubjectAttributeClassifier.java URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/subject/SubjectAttributeClassifier.java?rev=1390134&r1=1389906&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/subject/SubjectAttributeClassifier.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/attributes/subject/SubjectAttributeClassifier.java Tue Sep 25 21:06:18 2012 @@ -1,27 +1,22 @@ -/* - * Copyright: (c) 2012 Mayo Foundation for Medical Education and - * Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the - * triple-shield Mayo logo are trademarks and service marks of MFMER. +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 * - * Except as contained in the copyright notice above, or as used to identify - * MFMER as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. */ -package edu.mayo.bmi.attributes.subject; +package org.apache.ctakes.assertion.attributes.subject; import java.io.IOException; import java.util.ArrayList; @@ -38,18 +33,18 @@ import org.apache.uima.jcas.tcas.Annotat import org.uimafit.util.JCasUtil; import org.xml.sax.SAXException; -import edu.mayo.bmi.nlp.parser.util.DependencyPath; -import edu.mayo.bmi.nlp.parser.util.DependencyUtility; -import edu.mayo.bmi.uima.core.type.constants.CONST; -import edu.mayo.bmi.uima.core.type.relation.Relation; -import edu.mayo.bmi.uima.core.type.syntax.BaseToken; -import edu.mayo.bmi.uima.core.type.syntax.ConllDependencyNode; -import edu.mayo.bmi.uima.core.type.textsem.IdentifiedAnnotation; -import edu.mayo.bmi.uima.core.type.textsem.IdentifiedAnnotation; -import edu.mayo.bmi.uima.core.type.textsem.Predicate; -import edu.mayo.bmi.uima.core.type.textsem.SemanticArgument; -import edu.mayo.bmi.uima.core.type.textsem.SemanticRoleRelation; -import edu.mayo.bmi.uima.core.type.textspan.Sentence; +import org.apache.ctakes.dependency.parser.util.DependencyPath; +import org.apache.ctakes.dependency.parser.util.DependencyUtility; +import org.apache.ctakes.typesystem.type.constants.CONST; +import org.apache.ctakes.typesystem.type.relation.Relation; +import org.apache.ctakes.typesystem.type.syntax.BaseToken; +import org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode; +import org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation; +import org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation; +import org.apache.ctakes.typesystem.type.textsem.Predicate; +import org.apache.ctakes.typesystem.type.textsem.SemanticArgument; +import org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation; +import org.apache.ctakes.typesystem.type.textspan.Sentence; /** Copied: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/AssertionAnalysisEngine.java (from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/AssertionAnalysisEngine.java) URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/AssertionAnalysisEngine.java?p2=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/AssertionAnalysisEngine.java&p1=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/AssertionAnalysisEngine.java&r1=1389906&r2=1390134&rev=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/AssertionAnalysisEngine.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/AssertionAnalysisEngine.java Tue Sep 25 21:06:18 2012 @@ -1,26 +1,22 @@ -/* - * Copyright: (c) 2012 The MITRE Corporation. All rights reserved. +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at * - * Except as contained in the copyright notice above, or as used to identify - * MITRE as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. */ - -package org.mitre.medfacts.uima.assertion; +package org.apache.ctakes.assertion.medfacts; import java.io.File; import java.io.PrintWriter; @@ -51,20 +47,21 @@ import org.mitre.medfacts.i2b2.annotatio import org.mitre.medfacts.i2b2.api.ApiConcept; import org.mitre.medfacts.i2b2.api.AssertionDecoderConfiguration; import org.mitre.medfacts.i2b2.api.SingleDocumentProcessor; -import org.mitre.medfacts.i2b2.api.ctakes.CharacterOffsetToLineTokenConverterCtakesImpl; -import org.mitre.medfacts.i2b2.api.ctakes.SingleDocumentProcessorCtakes; import org.mitre.medfacts.i2b2.cli.BatchRunner; import org.mitre.medfacts.i2b2.util.StringHandling; -import org.mitre.medfacts.types.Assertion; -import org.mitre.medfacts.types.Concept; -import org.mitre.medfacts.types.Concept_Type; import org.mitre.medfacts.zoner.CharacterOffsetToLineTokenConverter; import org.mitre.medfacts.zoner.LineTokenToCharacterOffsetConverter; -import edu.mayo.bmi.attributes.generic.GenericAttributeClassifier; -import edu.mayo.bmi.attributes.subject.SubjectAttributeClassifier; -import edu.mayo.bmi.uima.core.type.constants.CONST; -import edu.mayo.bmi.uima.core.type.textsem.IdentifiedAnnotation; + +import org.apache.ctakes.assertion.attributes.generic.GenericAttributeClassifier; +import org.apache.ctakes.assertion.attributes.subject.SubjectAttributeClassifier; +import org.apache.ctakes.assertion.medfacts.i2b2.api.CharacterOffsetToLineTokenConverterCtakesImpl; +import org.apache.ctakes.assertion.medfacts.i2b2.api.SingleDocumentProcessorCtakes; +import org.apache.ctakes.assertion.medfacts.types.Assertion; +import org.apache.ctakes.assertion.medfacts.types.Concept; +import org.apache.ctakes.assertion.medfacts.types.Concept_Type; +import org.apache.ctakes.typesystem.type.constants.CONST; +import org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation; public class AssertionAnalysisEngine extends JCasAnnotator_ImplBase { Copied: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/CasIndexer.java (from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/CasIndexer.java) URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/CasIndexer.java?p2=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/CasIndexer.java&p1=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/CasIndexer.java&r1=1389906&r2=1390134&rev=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/CasIndexer.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/CasIndexer.java Tue Sep 25 21:06:18 2012 @@ -1,26 +1,22 @@ -/* - * Copyright: (c) 2012 The MITRE Corporation. All rights reserved. +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at * - * Except as contained in the copyright notice above, or as used to identify - * MITRE as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. */ - -package org.mitre.medfacts.uima.assertion; +package org.apache.ctakes.assertion.medfacts; import java.io.PrintWriter; import java.io.StringWriter; @@ -36,7 +32,7 @@ import org.apache.uima.cas.text.Annotati import org.apache.uima.jcas.JCas; import org.apache.uima.jcas.tcas.Annotation; -import edu.mayo.bmi.uima.core.type.textsem.EntityMention; +import org.apache.ctakes.typesystem.type.textsem.EntityMention; public class CasIndexer { Copied: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConceptConverterAnalysisEngine.java (from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConceptConverterAnalysisEngine.java) URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConceptConverterAnalysisEngine.java?p2=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConceptConverterAnalysisEngine.java&p1=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConceptConverterAnalysisEngine.java&r1=1389906&r2=1390134&rev=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConceptConverterAnalysisEngine.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConceptConverterAnalysisEngine.java Tue Sep 25 21:06:18 2012 @@ -1,26 +1,22 @@ -/* - * Copyright: (c) 2012 The MITRE Corporation. All rights reserved. +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at * - * Except as contained in the copyright notice above, or as used to identify - * MITRE as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. */ - -package org.mitre.medfacts.uima.assertion; +package org.apache.ctakes.assertion.medfacts; import java.io.File; import java.util.ArrayList; @@ -51,16 +47,16 @@ import org.mitre.medfacts.i2b2.api.Asser import org.mitre.medfacts.i2b2.api.SingleDocumentProcessor; import org.mitre.medfacts.i2b2.cli.BatchRunner; import org.mitre.medfacts.i2b2.util.StringHandling; -import org.mitre.medfacts.types.Assertion; -import org.mitre.medfacts.types.Concept; -import org.mitre.medfacts.types.Concept_Type; import org.mitre.medfacts.zoner.LineTokenToCharacterOffsetConverter; -import edu.mayo.bmi.uima.core.type.refsem.OntologyConcept; -import edu.mayo.bmi.uima.core.type.refsem.UmlsConcept; -import edu.mayo.bmi.uima.core.type.textsem.EntityMention; -import edu.mayo.bmi.uima.core.type.textsem.EventMention; -import edu.mayo.bmi.uima.core.type.textsem.IdentifiedAnnotation; +import org.apache.ctakes.assertion.medfacts.types.Assertion; +import org.apache.ctakes.assertion.medfacts.types.Concept; +import org.apache.ctakes.assertion.medfacts.types.Concept_Type; +import org.apache.ctakes.typesystem.type.refsem.OntologyConcept; +import org.apache.ctakes.typesystem.type.refsem.UmlsConcept; +import org.apache.ctakes.typesystem.type.textsem.EntityMention; +import org.apache.ctakes.typesystem.type.textsem.EventMention; +import org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation; public class ConceptConverterAnalysisEngine extends JCasAnnotator_ImplBase { Copied: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConceptLookup.java (from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConceptLookup.java) URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConceptLookup.java?p2=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConceptLookup.java&p1=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConceptLookup.java&r1=1389906&r2=1390134&rev=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConceptLookup.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConceptLookup.java Tue Sep 25 21:06:18 2012 @@ -1,26 +1,22 @@ -/* - * Copyright: (c) 2012 The MITRE Corporation. All rights reserved. +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at * - * Except as contained in the copyright notice above, or as used to identify - * MITRE as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. */ - -package org.mitre.medfacts.uima.assertion; +package org.apache.ctakes.assertion.medfacts; import java.util.Arrays; import java.util.HashSet; @@ -30,8 +26,8 @@ import org.apache.uima.cas.FeatureStruct import org.apache.uima.jcas.cas.FSArray; import org.mitre.medfacts.i2b2.annotation.ConceptType; -import edu.mayo.bmi.uima.core.type.refsem.OntologyConcept; -import edu.mayo.bmi.uima.core.type.refsem.UmlsConcept; +import org.apache.ctakes.typesystem.type.refsem.OntologyConcept; +import org.apache.ctakes.typesystem.type.refsem.UmlsConcept; public class ConceptLookup { Copied: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConvertXMIAssertionsToi2b2Format.java (from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConvertXMIAssertionsToi2b2Format.java) URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConvertXMIAssertionsToi2b2Format.java?p2=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConvertXMIAssertionsToi2b2Format.java&p1=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConvertXMIAssertionsToi2b2Format.java&r1=1389906&r2=1390134&rev=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/ConvertXMIAssertionsToi2b2Format.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/ConvertXMIAssertionsToi2b2Format.java Tue Sep 25 21:06:18 2012 @@ -1,31 +1,29 @@ -/* - * Copyright: (c) 2012 The MITRE Corporation. All rights reserved. +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at * - * Except as contained in the copyright notice above, or as used to identify - * MITRE as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. */ - -package org.mitre.medfacts.uima.assertion; +package org.apache.ctakes.assertion.medfacts; import org.mitre.medfacts.zoner.CharacterOffsetToLineTokenConverter; import org.mitre.medfacts.zoner.CharacterOffsetToLineTokenConverterDefaultImpl; import java.io.File; import java.io.FileInputStream; + +import org.apache.ctakes.assertion.medfacts.types.Assertion; import org.apache.uima.cas.impl.XmiCasDeserializer; import org.xml.sax.SAXException; import org.apache.uima.collection.CollectionException; @@ -43,7 +41,6 @@ import org.apache.uima.jcas.cas.Sofa; import org.apache.uima.resource.metadata.TypeSystemDescription; import org.apache.uima.util.InvalidXMLException; import org.apache.uima.resource.ResourceInitializationException; -import org.mitre.medfacts.types.Assertion; import org.apache.uima.cas.text.AnnotationIndex; import org.apache.uima.jcas.tcas.Annotation; import org.mitre.medfacts.zoner.LineAndTokenPosition; Copied: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/Converti2b2AnnotationsToCTAKES.java (from r1389906, incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/Converti2b2AnnotationsToCTAKES.java) URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/Converti2b2AnnotationsToCTAKES.java?p2=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/Converti2b2AnnotationsToCTAKES.java&p1=incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/Converti2b2AnnotationsToCTAKES.java&r1=1389906&r2=1390134&rev=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/mitre/medfacts/uima/assertion/Converti2b2AnnotationsToCTAKES.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/Converti2b2AnnotationsToCTAKES.java Tue Sep 25 21:06:18 2012 @@ -1,26 +1,22 @@ -/* - * Copyright: (c) 2012 The MITRE Corporation. All rights reserved. +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 * - * Except as contained in the copyright notice above, or as used to identify - * MITRE as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. */ - -package org.mitre.medfacts.uima.assertion; +package org.apache.ctakes.assertion.medfacts; import org.mitre.medfacts.zoner.CharacterOffsetToLineTokenConverter; import org.mitre.medfacts.zoner.CharacterOffsetToLineTokenConverterDefaultImpl; @@ -43,7 +39,6 @@ import org.apache.uima.jcas.cas.Sofa; import org.apache.uima.resource.metadata.TypeSystemDescription; import org.apache.uima.util.InvalidXMLException; import org.apache.uima.resource.ResourceInitializationException; -import org.mitre.medfacts.types.Assertion; import org.mitre.medfacts.i2b2.annotation.Annotation; import org.apache.uima.cas.text.AnnotationIndex; //import org.apache.uima.jcas.tcas.Annotation; @@ -56,13 +51,15 @@ import org.mitre.medfacts.i2b2.util.Stri import org.mitre.medfacts.zoner.LineTokenToCharacterOffsetConverter; import org.mitre.medfacts.i2b2.processors.AssertionFileProcessor; import java.util.List; -import edu.mayo.bmi.uima.core.type.textspan.Sentence; -import edu.mayo.bmi.uima.core.type.syntax.WordToken; + +import org.apache.ctakes.assertion.medfacts.types.Assertion; +import org.apache.ctakes.assertion.medfacts.types.Concept; +import org.apache.ctakes.typesystem.type.textspan.Sentence; +import org.apache.ctakes.typesystem.type.syntax.WordToken; import org.apache.uima.jcas.JCas; import java.io.FileOutputStream; import org.apache.uima.cas.impl.XmiCasSerializer; import org.apache.uima.util.XMLSerializer; -import org.mitre.medfacts.types.Concept; Modified: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionCleartkAnalysisEngine.java URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionCleartkAnalysisEngine.java?rev=1390134&r1=1389906&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionCleartkAnalysisEngine.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionCleartkAnalysisEngine.java Tue Sep 25 21:06:18 2012 @@ -1,4 +1,22 @@ -package org.mitre.medfacts.uima.assertion.cleartk; +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ +package org.apache.ctakes.assertion.medfacts.cleartk; import java.util.ArrayList; import java.util.Arrays; @@ -28,10 +46,10 @@ import org.cleartk.classifier.feature.pr import org.cleartk.type.test.Token; import org.uimafit.util.JCasUtil; -import edu.mayo.bmi.uima.core.type.syntax.BaseToken; -import edu.mayo.bmi.uima.core.type.textsem.EntityMention; -import edu.mayo.bmi.uima.core.type.textsem.IdentifiedAnnotation; -import edu.mayo.bmi.uima.core.type.textspan.Sentence; +import org.apache.ctakes.typesystem.type.syntax.BaseToken; +import org.apache.ctakes.typesystem.type.textsem.EntityMention; +import org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation; +import org.apache.ctakes.typesystem.type.textspan.Sentence; public class AssertionCleartkAnalysisEngine extends CleartkSequenceAnnotator Modified: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/CharacterOffsetToLineTokenConverterCtakesImpl.java URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/CharacterOffsetToLineTokenConverterCtakesImpl.java?rev=1390134&r1=1389906&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/CharacterOffsetToLineTokenConverterCtakesImpl.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/CharacterOffsetToLineTokenConverterCtakesImpl.java Tue Sep 25 21:06:18 2012 @@ -1,26 +1,22 @@ -/* - * Copyright: (c) 2012 The MITRE Corporation. All rights reserved. +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at * - * Except as contained in the copyright notice above, or as used to identify - * MITRE as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. */ - -package org.mitre.medfacts.i2b2.api.ctakes; +package org.apache.ctakes.assertion.medfacts.i2b2.api; import java.util.ArrayList; import java.util.List; @@ -37,8 +33,8 @@ import org.mitre.medfacts.i2b2.api.ApiCo import org.mitre.medfacts.zoner.CharacterOffsetToLineTokenConverter; import org.mitre.medfacts.zoner.LineAndTokenPosition; -import edu.mayo.bmi.uima.core.type.syntax.BaseToken; -import edu.mayo.bmi.uima.core.type.textspan.Sentence; +import org.apache.ctakes.typesystem.type.syntax.BaseToken; +import org.apache.ctakes.typesystem.type.textspan.Sentence; public class CharacterOffsetToLineTokenConverterCtakesImpl implements CharacterOffsetToLineTokenConverter { Modified: incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/ConstraintConstructor.java URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/ConstraintConstructor.java?rev=1390134&r1=1389906&r2=1390134&view=diff ============================================================================== --- incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/ConstraintConstructor.java (original) +++ incubator/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/i2b2/api/ConstraintConstructor.java Tue Sep 25 21:06:18 2012 @@ -1,26 +1,22 @@ -/* - * Copyright: (c) 2012 The MITRE Corporation. All rights reserved. +/** + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at * - * Except as contained in the copyright notice above, or as used to identify - * MITRE as the author of this software, the trade names, trademarks, service - * marks, or product names of the copyright holder shall not be used in - * advertising, promotion or otherwise in connection with this software without - * prior written authorization of the copyright holder. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. */ - -package org.mitre.medfacts.i2b2.api.ctakes; +package org.apache.ctakes.assertion.medfacts.i2b2.api; import org.apache.uima.cas.ConstraintFactory; import org.apache.uima.cas.FSIntConstraint;