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From chen...@apache.org
Subject svn commit: r1389618 [16/22] - in /incubator/ctakes/trunk: ./ ctakes-chunker/ ctakes-chunker/desc/ ctakes-chunker/resources/launch/ ctakes-chunker/src/main/java/edu/ ctakes-chunker/src/main/java/org/ ctakes-chunker/src/main/java/org/apache/ ctakes-chun...
Date Mon, 24 Sep 2012 22:05:23 GMT
Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/FrequencyUnitFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/FrequencyUnitFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/FrequencyUnitFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/FrequencyUnitFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/FrequencyUnitFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/FrequencyUnitFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/FrequencyUnitFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.elements;
+package org.apache.ctakes.drugner.fsm.machines.elements;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,26 +25,27 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.CombineCondition;
+import org.apache.ctakes.core.fsm.condition.DisjoinCondition;
+import org.apache.ctakes.core.fsm.condition.IntegerCondition;
+import org.apache.ctakes.core.fsm.condition.IntegerRangeCondition;
+import org.apache.ctakes.core.fsm.condition.IntegerValueCondition;
+import org.apache.ctakes.core.fsm.condition.NegateCondition;
+import org.apache.ctakes.core.fsm.condition.PunctuationValueCondition;
+import org.apache.ctakes.core.fsm.condition.TextSetCondition;
+import org.apache.ctakes.core.fsm.condition.TextValueCondition;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.state.NonTerminalEndState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+import org.apache.ctakes.drugner.fsm.elements.conditions.ContainsSetTextValueCondition;
+import org.apache.ctakes.drugner.fsm.elements.conditions.TimeCondition;
+import org.apache.ctakes.drugner.fsm.output.elements.FrequencyUnitToken;
+import org.apache.ctakes.drugner.fsm.states.util.IndentStartState;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Condition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.CombineCondition;
-import edu.mayo.bmi.fsm.condition.DisjoinCondition;
-import edu.mayo.bmi.fsm.condition.IntegerCondition;
-import edu.mayo.bmi.fsm.condition.IntegerRangeCondition;
-import edu.mayo.bmi.fsm.condition.IntegerValueCondition;
-import edu.mayo.bmi.fsm.condition.NegateCondition;
-import edu.mayo.bmi.fsm.condition.PunctuationValueCondition;
-import edu.mayo.bmi.fsm.condition.TextSetCondition;
-import edu.mayo.bmi.fsm.condition.TextValueCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.ContainsSetTextValueCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.TimeCondition;
-import edu.mayo.bmi.fsm.ner.output.elements.FrequencyUnitToken;
-import edu.mayo.bmi.fsm.ner.states.util.IndentStartState;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.state.NonTerminalEndState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect frequency unit data in the given

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RangeStrengthFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/RangeStrengthFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RangeStrengthFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RangeStrengthFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/RangeStrengthFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/RangeStrengthFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RangeStrengthFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.elements;
+package org.apache.ctakes.drugner.fsm.machines.elements;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,19 +25,20 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.DecimalCondition;
+import org.apache.ctakes.core.fsm.condition.NumberCondition;
+import org.apache.ctakes.core.fsm.condition.PunctuationValueCondition;
+import org.apache.ctakes.core.fsm.condition.RangeCondition;
+import org.apache.ctakes.core.fsm.condition.WordSetCondition;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+import org.apache.ctakes.drugner.fsm.elements.conditions.FractionStrengthCondition;
+import org.apache.ctakes.drugner.fsm.output.util.RangeStrengthToken;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Condition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.DecimalCondition;
-import edu.mayo.bmi.fsm.condition.NumberCondition;
-import edu.mayo.bmi.fsm.condition.PunctuationValueCondition;
-import edu.mayo.bmi.fsm.condition.RangeCondition;
-import edu.mayo.bmi.fsm.condition.WordSetCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.FractionStrengthCondition;
-import edu.mayo.bmi.fsm.ner.output.util.RangeStrengthToken;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect range strength tokens in the given

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RouteFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/RouteFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RouteFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RouteFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/RouteFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/RouteFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RouteFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.elements;
+package org.apache.ctakes.drugner.fsm.machines.elements;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,19 +25,20 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.DisjoinCondition;
+import org.apache.ctakes.core.fsm.condition.PunctuationValueCondition;
+import org.apache.ctakes.core.fsm.condition.RangeCondition;
+import org.apache.ctakes.core.fsm.condition.TextValueCondition;
+import org.apache.ctakes.core.fsm.condition.WordSetCondition;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+import org.apache.ctakes.drugner.fsm.elements.conditions.RangeStrengthCondition;
+import org.apache.ctakes.drugner.fsm.output.elements.RouteToken;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Condition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.DisjoinCondition;
-import edu.mayo.bmi.fsm.condition.PunctuationValueCondition;
-import edu.mayo.bmi.fsm.condition.RangeCondition;
-import edu.mayo.bmi.fsm.condition.TextValueCondition;
-import edu.mayo.bmi.fsm.condition.WordSetCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.RangeStrengthCondition;
-import edu.mayo.bmi.fsm.ner.output.elements.RouteToken;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect route data in the given

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/StrengthFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/StrengthFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/StrengthFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/StrengthFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/StrengthFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/StrengthFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/StrengthFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.elements;
+package org.apache.ctakes.drugner.fsm.machines.elements;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,23 +25,24 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.DecimalCondition;
+import org.apache.ctakes.core.fsm.condition.IntegerCondition;
+import org.apache.ctakes.core.fsm.condition.NegateCondition;
+import org.apache.ctakes.core.fsm.condition.NumberCondition;
+import org.apache.ctakes.core.fsm.condition.PunctuationValueCondition;
+import org.apache.ctakes.core.fsm.condition.WordSetCondition;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.state.NonTerminalEndState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+import org.apache.ctakes.drugner.fsm.elements.conditions.FractionStrengthCondition;
+import org.apache.ctakes.drugner.fsm.elements.conditions.RangeStrengthCondition;
+import org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCombinedCondition;
+import org.apache.ctakes.drugner.fsm.elements.conditions.StrengthUnitCondition;
+import org.apache.ctakes.drugner.fsm.output.elements.StrengthToken;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.DecimalCondition;
-import edu.mayo.bmi.fsm.condition.IntegerCondition;
-import edu.mayo.bmi.fsm.condition.NegateCondition;
-import edu.mayo.bmi.fsm.condition.NumberCondition;
-import edu.mayo.bmi.fsm.condition.PunctuationValueCondition;
-import edu.mayo.bmi.fsm.condition.WordSetCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.FractionStrengthCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.RangeStrengthCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.StrengthUnitCombinedCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.StrengthUnitCondition;
-import edu.mayo.bmi.fsm.ner.output.elements.StrengthToken;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.state.NonTerminalEndState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect dosages in the given

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/StrengthUnitFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/StrengthUnitFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/StrengthUnitFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/StrengthUnitFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/StrengthUnitFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/elements/StrengthUnitFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/StrengthUnitFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.elements;
+package org.apache.ctakes.drugner.fsm.machines.elements;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,18 +25,19 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.PunctuationValueCondition;
+import org.apache.ctakes.core.fsm.condition.SymbolValueCondition;
+import org.apache.ctakes.core.fsm.condition.WordSetCondition;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+import org.apache.ctakes.drugner.fsm.elements.conditions.ContainsSetTextValueCondition;
+import org.apache.ctakes.drugner.fsm.output.elements.StrengthUnitCombinedToken;
+import org.apache.ctakes.drugner.fsm.output.elements.StrengthUnitToken;
+import org.apache.ctakes.drugner.fsm.states.util.IndentStartState;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.PunctuationValueCondition;
-import edu.mayo.bmi.fsm.condition.SymbolValueCondition;
-import edu.mayo.bmi.fsm.condition.WordSetCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.ContainsSetTextValueCondition;
-import edu.mayo.bmi.fsm.ner.output.elements.StrengthUnitCombinedToken;
-import edu.mayo.bmi.fsm.ner.output.elements.StrengthUnitToken;
-import edu.mayo.bmi.fsm.ner.states.util.IndentStartState;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect dosages in the given

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/HyphenatedDrugFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/HyphenatedDrugFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/HyphenatedDrugFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/HyphenatedDrugFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/HyphenatedDrugFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/HyphenatedDrugFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/HyphenatedDrugFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.util;
+package org.apache.ctakes.drugner.fsm.machines.util;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,14 +25,15 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.WordSetCondition;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+import org.apache.ctakes.drugner.fsm.output.util.HyphenatedDrugToken;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Condition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.WordSetCondition;
-import edu.mayo.bmi.fsm.ner.output.util.HyphenatedDrugToken;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect hyphenated drug information

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/NegIndicatorFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/NegIndicatorFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/NegIndicatorFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/NegIndicatorFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/NegIndicatorFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/NegIndicatorFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/NegIndicatorFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.util;
+package org.apache.ctakes.drugner.fsm.machines.util;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,19 +25,20 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.DisjoinCondition;
+import org.apache.ctakes.core.fsm.condition.NegateCondition;
+import org.apache.ctakes.core.fsm.condition.TextSetCondition;
+import org.apache.ctakes.core.fsm.condition.TextValueCondition;
+import org.apache.ctakes.core.fsm.machine.FSM;
+import org.apache.ctakes.core.fsm.output.NegationIndicator;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.state.NonTerminalEndState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Condition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.DisjoinCondition;
-import edu.mayo.bmi.fsm.condition.NegateCondition;
-import edu.mayo.bmi.fsm.condition.TextSetCondition;
-import edu.mayo.bmi.fsm.condition.TextValueCondition;
-import edu.mayo.bmi.fsm.machine.FSM;
-import edu.mayo.bmi.fsm.output.NegationIndicator;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.state.NonTerminalEndState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect dates in the given input of

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/NonIndicatorFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/NonIndicatorFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/NonIndicatorFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/NonIndicatorFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/NonIndicatorFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/NonIndicatorFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/NonIndicatorFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.util;
+package org.apache.ctakes.drugner.fsm.machines.util;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,15 +25,16 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.TextSetCondition;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.state.NonTerminalEndState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+import org.apache.ctakes.drugner.fsm.output.util.NonIndicator;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Condition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.TextSetCondition;
-import edu.mayo.bmi.fsm.ner.output.util.NonIndicator;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.state.NonTerminalEndState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect dates in the given input of

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/StatusIndicatorFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/StatusIndicatorFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/StatusIndicatorFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/StatusIndicatorFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/StatusIndicatorFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/StatusIndicatorFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/StatusIndicatorFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.util;
+package org.apache.ctakes.drugner.fsm.machines.util;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,16 +25,17 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.TextSetCondition;
+import org.apache.ctakes.core.fsm.condition.TextValueCondition;
+import org.apache.ctakes.core.fsm.output.StatusIndicator;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.state.NonTerminalEndState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Condition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.TextSetCondition;
-import edu.mayo.bmi.fsm.condition.TextValueCondition;
-import edu.mayo.bmi.fsm.output.StatusIndicator;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.state.NonTerminalEndState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect ???

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SubSectionIndicatorFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/SubSectionIndicatorFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SubSectionIndicatorFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SubSectionIndicatorFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/SubSectionIndicatorFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/SubSectionIndicatorFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SubSectionIndicatorFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.util;
+package org.apache.ctakes.drugner.fsm.machines.util;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,18 +25,19 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.PunctuationValueCondition;
+import org.apache.ctakes.core.fsm.condition.TextSetCondition;
+import org.apache.ctakes.core.fsm.condition.TextValueCondition;
+import org.apache.ctakes.core.fsm.machine.FSM;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.state.NonTerminalEndState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+import org.apache.ctakes.drugner.fsm.output.util.SubSectionIndicator;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Condition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.PunctuationValueCondition;
-import edu.mayo.bmi.fsm.condition.TextSetCondition;
-import edu.mayo.bmi.fsm.condition.TextValueCondition;
-import edu.mayo.bmi.fsm.machine.FSM;
-import edu.mayo.bmi.fsm.ner.output.util.SubSectionIndicator;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.state.NonTerminalEndState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect sub-sections in the given input of

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SuffixFrequencyFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/SuffixFrequencyFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SuffixFrequencyFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SuffixFrequencyFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/SuffixFrequencyFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/SuffixFrequencyFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SuffixFrequencyFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.util;
+package org.apache.ctakes.drugner.fsm.machines.util;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,18 +25,19 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.IntegerCondition;
+import org.apache.ctakes.core.fsm.condition.PunctuationValueCondition;
+import org.apache.ctakes.core.fsm.condition.TextValueCondition;
+import org.apache.ctakes.core.fsm.condition.WordSetCondition;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+import org.apache.ctakes.drugner.fsm.elements.conditions.ContainsSetTextValueCondition;
+import org.apache.ctakes.drugner.fsm.output.util.SuffixFrequencyToken;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Condition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.IntegerCondition;
-import edu.mayo.bmi.fsm.condition.PunctuationValueCondition;
-import edu.mayo.bmi.fsm.condition.TextValueCondition;
-import edu.mayo.bmi.fsm.condition.WordSetCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.ContainsSetTextValueCondition;
-import edu.mayo.bmi.fsm.ner.output.util.SuffixFrequencyToken;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect frequency suffix data in the given

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SuffixStrengthFSM.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/SuffixStrengthFSM.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SuffixStrengthFSM.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SuffixStrengthFSM.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/SuffixStrengthFSM.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/machines/util/SuffixStrengthFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/util/SuffixStrengthFSM.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.machines.util;
+package org.apache.ctakes.drugner.fsm.machines.util;
 
 import java.util.HashMap;
 import java.util.HashSet;
@@ -25,17 +25,18 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import org.apache.ctakes.core.fsm.condition.IntegerCondition;
+import org.apache.ctakes.core.fsm.condition.PunctuationValueCondition;
+import org.apache.ctakes.core.fsm.condition.WordSetCondition;
+import org.apache.ctakes.core.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.token.BaseToken;
+import org.apache.ctakes.drugner.fsm.elements.conditions.StrengthCondition;
+import org.apache.ctakes.drugner.fsm.output.util.SuffixStrengthToken;
+
 import net.openai.util.fsm.AnyCondition;
 import net.openai.util.fsm.Condition;
 import net.openai.util.fsm.Machine;
 import net.openai.util.fsm.State;
-import edu.mayo.bmi.fsm.condition.IntegerCondition;
-import edu.mayo.bmi.fsm.condition.PunctuationValueCondition;
-import edu.mayo.bmi.fsm.condition.WordSetCondition;
-import edu.mayo.bmi.fsm.ner.elements.conditions.StrengthCondition;
-import edu.mayo.bmi.fsm.ner.output.util.SuffixStrengthToken;
-import edu.mayo.bmi.fsm.state.NamedState;
-import edu.mayo.bmi.fsm.token.BaseToken;
 
 /**
  * Uses one or more finite state machines to detect strength suffix information

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/AssociatedCodeToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/AssociatedCodeToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/AssociatedCodeToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/AssociatedCodeToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/AssociatedCodeToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/AssociatedCodeToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/AssociatedCodeToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/BaseTokenImpl.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/BaseTokenImpl.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/BaseTokenImpl.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/BaseTokenImpl.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/BaseTokenImpl.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/BaseTokenImpl.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/BaseTokenImpl.java Mon Sep 24 22:04:51 2012
@@ -16,9 +16,9 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
-import edu.mayo.bmi.fsm.token.BaseToken;
+import org.apache.ctakes.core.fsm.token.BaseToken;
 
 public class BaseTokenImpl implements BaseToken
 {

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/ConfidenceScoreToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/ConfidenceScoreToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/ConfidenceScoreToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/ConfidenceScoreToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/ConfidenceScoreToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/ConfidenceScoreToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/ConfidenceScoreToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DosageToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/DosageToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DosageToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DosageToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/DosageToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/DosageToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DosageToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DrugChangeStatusToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/DrugChangeStatusToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DrugChangeStatusToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DrugChangeStatusToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/DrugChangeStatusToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/DrugChangeStatusToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DrugChangeStatusToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DurationToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/DurationToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DurationToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DurationToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/DurationToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/DurationToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/DurationToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FormToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/FormToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FormToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FormToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/FormToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/FormToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FormToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FrequencyToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/FrequencyToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FrequencyToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FrequencyToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/FrequencyToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/FrequencyToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FrequencyToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FrequencyUnitToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/FrequencyUnitToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FrequencyUnitToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FrequencyUnitToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/FrequencyUnitToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/FrequencyUnitToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/FrequencyUnitToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/RouteToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/RouteToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/RouteToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/RouteToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/RouteToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/RouteToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/RouteToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/StrengthToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/StrengthToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/StrengthToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthUnitCombinedToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/StrengthUnitCombinedToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthUnitCombinedToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthUnitCombinedToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/StrengthUnitCombinedToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/StrengthUnitCombinedToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthUnitCombinedToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 	/**
 	 *

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthUnitToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/StrengthUnitToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthUnitToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthUnitToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/StrengthUnitToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/elements/StrengthUnitToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/elements/StrengthUnitToken.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.elements;
+package org.apache.ctakes.drugner.fsm.output.elements;
 
 	/**
 	 *

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/DecimalStrengthToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/DecimalStrengthToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/DecimalStrengthToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/DecimalStrengthToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/DecimalStrengthToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/DecimalStrengthToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/DecimalStrengthToken.java Mon Sep 24 22:04:51 2012
@@ -18,9 +18,9 @@
  */
 //Source file: C:\\external_workspace\\uima\\DrugNER\\src\\edu\\mayo\\bmi\\fsm\\output\\DecimalStrengthToken.java
 
-package edu.mayo.bmi.fsm.ner.output.util;
+package org.apache.ctakes.drugner.fsm.output.util;
 
-import edu.mayo.bmi.fsm.ner.output.elements.BaseTokenImpl;
+import org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl;
 
 
 

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/FractionStrengthToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/FractionStrengthToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/FractionStrengthToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/FractionStrengthToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/FractionStrengthToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/FractionStrengthToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/FractionStrengthToken.java Mon Sep 24 22:04:51 2012
@@ -16,9 +16,9 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.util;
+package org.apache.ctakes.drugner.fsm.output.util;
 
-import edu.mayo.bmi.fsm.ner.output.elements.BaseTokenImpl;
+import org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl;
 
 
 /**

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/FractionToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/FractionToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/FractionToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/FractionToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/FractionToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/FractionToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/FractionToken.java Mon Sep 24 22:04:51 2012
@@ -16,9 +16,9 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.util;
+package org.apache.ctakes.drugner.fsm.output.util;
 
-import edu.mayo.bmi.fsm.ner.output.elements.BaseTokenImpl;
+import org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl;
 
 
 /**

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/HyphenatedDrugToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/HyphenatedDrugToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/HyphenatedDrugToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/HyphenatedDrugToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/HyphenatedDrugToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/HyphenatedDrugToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/HyphenatedDrugToken.java Mon Sep 24 22:04:51 2012
@@ -16,9 +16,9 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.util;
+package org.apache.ctakes.drugner.fsm.output.util;
 
-import edu.mayo.bmi.fsm.ner.output.elements.BaseTokenImpl;
+import org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl;
 
 
 /**

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/NonIndicator.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/NonIndicator.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/NonIndicator.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/NonIndicator.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/NonIndicator.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/NonIndicator.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/NonIndicator.java Mon Sep 24 22:04:51 2012
@@ -22,9 +22,9 @@
  * TODO To change the template for this generated file go to
  * Window - Preferences - Java - Code Style - Code Templates
  */
-package edu.mayo.bmi.fsm.ner.output.util;
+package org.apache.ctakes.drugner.fsm.output.util;
 
-import edu.mayo.bmi.fsm.output.BaseTokenImpl;
+import org.apache.ctakes.core.fsm.output.BaseTokenImpl;
 
 /**
  * @author duffp

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/RangeStrengthToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/RangeStrengthToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/RangeStrengthToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/RangeStrengthToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/RangeStrengthToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/RangeStrengthToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/RangeStrengthToken.java Mon Sep 24 22:04:51 2012
@@ -16,9 +16,9 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.util;
+package org.apache.ctakes.drugner.fsm.output.util;
 
-import edu.mayo.bmi.fsm.ner.output.elements.BaseTokenImpl;
+import org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl;
 
 
 /**

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/RangeToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/RangeToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/RangeToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/RangeToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/RangeToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/RangeToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/RangeToken.java Mon Sep 24 22:04:51 2012
@@ -16,9 +16,9 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.util;
+package org.apache.ctakes.drugner.fsm.output.util;
 
-import edu.mayo.bmi.fsm.ner.output.elements.BaseTokenImpl;
+import org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl;
 
 
 /**

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SubSectionIndicator.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/SubSectionIndicator.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SubSectionIndicator.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SubSectionIndicator.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/SubSectionIndicator.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/SubSectionIndicator.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SubSectionIndicator.java Mon Sep 24 22:04:51 2012
@@ -22,9 +22,9 @@
  * TODO To change the template for this generated file go to
  * Window - Preferences - Java - Code Style - Code Templates
  */
-package edu.mayo.bmi.fsm.ner.output.util;
+package org.apache.ctakes.drugner.fsm.output.util;
 
-import edu.mayo.bmi.fsm.output.BaseTokenImpl;
+import org.apache.ctakes.core.fsm.output.BaseTokenImpl;
 
 /**
  * @author Mayo Clinic

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SuffixFrequencyToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/SuffixFrequencyToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SuffixFrequencyToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SuffixFrequencyToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/SuffixFrequencyToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/SuffixFrequencyToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SuffixFrequencyToken.java Mon Sep 24 22:04:51 2012
@@ -16,9 +16,9 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.util;
+package org.apache.ctakes.drugner.fsm.output.util;
 
-import edu.mayo.bmi.fsm.ner.output.elements.BaseTokenImpl;
+import org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl;
 
 
 /**

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SuffixStrengthToken.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/SuffixStrengthToken.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SuffixStrengthToken.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SuffixStrengthToken.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/SuffixStrengthToken.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/output/util/SuffixStrengthToken.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/output/util/SuffixStrengthToken.java Mon Sep 24 22:04:51 2012
@@ -16,9 +16,9 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.output.util;
+package org.apache.ctakes.drugner.fsm.output.util;
 
-import edu.mayo.bmi.fsm.ner.output.elements.BaseTokenImpl;
+import org.apache.ctakes.drugner.fsm.output.elements.BaseTokenImpl;
 
 
 /**

Copied: incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/states/util/IndentStartState.java (from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/states/util/IndentStartState.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/states/util/IndentStartState.java?p2=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/states/util/IndentStartState.java&p1=incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/states/util/IndentStartState.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/states/util/IndentStartState.java (original)
+++ incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/states/util/IndentStartState.java Mon Sep 24 22:04:51 2012
@@ -16,9 +16,9 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.fsm.ner.states.util;
+package org.apache.ctakes.drugner.fsm.states.util;
 
-import edu.mayo.bmi.fsm.state.NamedState;
+import org.apache.ctakes.core.fsm.state.NamedState;
 
 
 /**

Modified: incubator/ctakes/trunk/ctakes-lvg/README
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-lvg/README?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-lvg/README (original)
+++ incubator/ctakes/trunk/ctakes-lvg/README Mon Sep 24 22:04:51 2012
@@ -15,10 +15,10 @@ Introduction
 This annotator wraps the National Library of Medicine (NLM) SPECIALIST lexical tools.
 
 See the documentation for the SPECIALIST lexical tools at
-http://lexsrv2.nlm.nih.gov/LexSysGroup/Projects/lvg/current/index.html
+http://lexsrv2.nlm.nih.gov/LexSysGroup/Projects/ctakes-lvg/current/index.html
   
 And also see the documentation for Lvg and Norm at 
-http://lexsrv2.nlm.nih.gov/LexSysGroup/Projects/lvg/current/docs/userDoc/index.html
+http://lexsrv2.nlm.nih.gov/LexSysGroup/Projects/ctakes-lvg/current/docs/userDoc/index.html
   
 This annotator generates a canonical form for each word and also generates a list of lemma 
 entries with Penn Treebank tags.  These tags could be useful for a part of speech (POS) tagger.
@@ -34,7 +34,7 @@ Description of resources
 %%%%%%%%%%%%%%%%
 lvg.properties
 %%%%%%%%%%%%%%%%
-The LVG config file  resources/lvg/data/config/lvg.properties  defines the location
+The LVG config file  resources/ctakes-lvg/data/config/lvg.properties  defines the location
 and attributes of the LVG database and the jdbc driver used.
 
 %%%%%%%%%%%%%%%%
@@ -48,9 +48,9 @@ project relatively small, the database t
 relatively small number of rows.
  
 To use the full lvg2008 database, download either lvg2008lite.tgz or lvg2008.tgz from 
-http://lexsrv3.nlm.nih.gov/SPECIALIST/Projects/lvg/2008/index.html
+http://lexsrv3.nlm.nih.gov/SPECIALIST/Projects/ctakes-lvg/2008/index.html
 and extract  data/HSqlDb  from that download to a temporary location.
-Then replace the  resources/lvg/data/HSqlDb  directory in this project with 
+Then replace the  resources/ctakes-lvg/data/HSqlDb  directory in this project with 
 the  data/HSqlDb  directory from that download.
 
 #########################

Modified: incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/AggregateAE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/AggregateAE.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/AggregateAE.xml (original)
+++ incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/AggregateAE.xml Mon Sep 24 22:04:51 2012
@@ -24,7 +24,7 @@
 <primitive>false</primitive>
 <delegateAnalysisEngineSpecifiers>
 <delegateAnalysisEngine key="TokensAndSentences">
-<import location="../../../core/desc/analysis_engine/TokensAndSentencesTAE.xml"/>
+<import location="../../../ctakes-core/desc/analysis_engine/TokensAndSentencesTAE.xml"/>
 </delegateAnalysisEngine>
 <delegateAnalysisEngine key="LvgAnnotator">
 <import location="LvgAnnotator.xml"/>

Modified: incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>
-<annotatorImplementationName>edu.mayo.bmi.uima.lvg.ae.LvgAnnotator</annotatorImplementationName>
+<annotatorImplementationName>org.apache.ctakes.lvg.ae.LvgAnnotator</annotatorImplementationName>
 <analysisEngineMetaData>
 <name>LVG Annotator</name>
 <description></description>
@@ -130,7 +130,7 @@
 <nameValuePair>
 <name>CmdCacheFileLocation</name>
 <value>
-<string>/lvg/2005_norm.voc</string>
+<string>/ctakes-lvg/2005_norm.voc</string>
 </value>
 </nameValuePair>
 <nameValuePair>
@@ -185,7 +185,7 @@
 <nameValuePair>
 <name>LemmaCacheFileLocation</name>
 <value>
-<string>/lvg/2005_lemma.voc</string>
+<string>/ctakes-lvg/2005_lemma.voc</string>
 </value>
 </nameValuePair>
 <nameValuePair>
@@ -234,7 +234,7 @@
 <externalResourceDependency>
 <key>LvgCmdApi</key>
 <description></description>
-<interfaceName>edu.mayo.bmi.uima.lvg.resource.LvgCmdApiResource</interfaceName>
+<interfaceName>org.apache.ctakes.lvg.resource.LvgCmdApiResource</interfaceName>
 <optional>false</optional>
 </externalResourceDependency>
 </externalResourceDependencies>
@@ -246,7 +246,7 @@
 <fileResourceSpecifier>
 <fileUrl>file:lvg/data/config/lvg.properties</fileUrl>
 </fileResourceSpecifier>
-<implementationName>edu.mayo.bmi.uima.lvg.resource.LvgCmdApiResourceImpl</implementationName>
+<implementationName>org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl</implementationName>
 </externalResource>
 </externalResources>
 <externalResourceBindings>

Modified: incubator/ctakes/trunk/ctakes-lvg/resources/lvg/data/config/lvg.properties
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-lvg/resources/lvg/data/config/lvg.properties?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-lvg/resources/lvg/data/config/lvg.properties (original)
+++ incubator/ctakes/trunk/ctakes-lvg/resources/lvg/data/config/lvg.properties Mon Sep 24 22:04:51 2012
@@ -34,7 +34,7 @@
 # LVG_NON_STRIP_MAP_UNICODE_FILE: the relative path (to LVG_DIR) of non-strip Unicode map file
 #-------------------------------------------------------------------
 
-# LVG_DIR=/some_path/LVG/resources/lvg/
+# LVG_DIR=/some_path/ctakes-lvg/resources/ctakes-lvg/
 # LVG_DIR=AUTO_MODE results in using user's current working directory.
 LVG_DIR=AUTO_MODE
 

Copied: incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgAnnotator.java (from r1388196, incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/ae/LvgAnnotator.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgAnnotator.java?p2=incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgAnnotator.java&p1=incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/ae/LvgAnnotator.java&r1=1388196&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/ae/LvgAnnotator.java (original)
+++ incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgAnnotator.java Mon Sep 24 22:04:51 2012
@@ -16,13 +16,13 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.uima.lvg.ae;
+package org.apache.ctakes.lvg.ae;
 
+import org.apache.ctakes.core.util.ListFactory;
+import org.apache.ctakes.lvg.resource.LvgCmdApiResource;
 import org.apache.ctakes.typesystem.type.syntax.Lemma;
 import org.apache.ctakes.typesystem.type.syntax.WordToken;
 import org.apache.ctakes.typesystem.type.textspan.Segment;
-import edu.mayo.bmi.uima.core.util.ListFactory;
-import edu.mayo.bmi.uima.lvg.resource.LvgCmdApiResource;
 import gov.nih.nlm.nls.lvg.Api.LvgCmdApi;
 import gov.nih.nlm.nls.lvg.Api.LvgLexItemApi;
 import gov.nih.nlm.nls.lvg.Lib.Category;

Copied: incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgBaseTokenAnnotator.java (from r1388196, incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/ae/LvgBaseTokenAnnotator.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgBaseTokenAnnotator.java?p2=incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgBaseTokenAnnotator.java&p1=incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/ae/LvgBaseTokenAnnotator.java&r1=1388196&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/ae/LvgBaseTokenAnnotator.java (original)
+++ incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgBaseTokenAnnotator.java Mon Sep 24 22:04:51 2012
@@ -16,13 +16,13 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.uima.lvg.ae;
+package org.apache.ctakes.lvg.ae;
 
+import org.apache.ctakes.core.util.ListFactory;
+import org.apache.ctakes.lvg.resource.LvgCmdApiResource;
 import org.apache.ctakes.typesystem.type.syntax.BaseToken;
 import org.apache.ctakes.typesystem.type.syntax.Lemma;
 import org.apache.ctakes.typesystem.type.textspan.Segment;
-import edu.mayo.bmi.uima.core.util.ListFactory;
-import edu.mayo.bmi.uima.lvg.resource.LvgCmdApiResource;
 import gov.nih.nlm.nls.lvg.Api.LvgCmdApi;
 import gov.nih.nlm.nls.lvg.Api.LvgLexItemApi;
 import gov.nih.nlm.nls.lvg.Lib.Category;

Copied: incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource/LvgCmdApiResource.java (from r1388092, incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/resource/LvgCmdApiResource.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource/LvgCmdApiResource.java?p2=incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource/LvgCmdApiResource.java&p1=incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/resource/LvgCmdApiResource.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/resource/LvgCmdApiResource.java (original)
+++ incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource/LvgCmdApiResource.java Mon Sep 24 22:04:51 2012
@@ -19,7 +19,7 @@
 /**
  * 
  */
-package edu.mayo.bmi.uima.lvg.resource;
+package org.apache.ctakes.lvg.resource;
 
 import gov.nih.nlm.nls.lvg.Api.LvgCmdApi;
 import gov.nih.nlm.nls.lvg.Api.LvgLexItemApi;

Copied: incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource/LvgCmdApiResourceImpl.java (from r1388092, incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/resource/LvgCmdApiResourceImpl.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource/LvgCmdApiResourceImpl.java?p2=incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource/LvgCmdApiResourceImpl.java&p1=incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/resource/LvgCmdApiResourceImpl.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-lvg/src/main/java/edu/mayo/bmi/uima/lvg/resource/LvgCmdApiResourceImpl.java (original)
+++ incubator/ctakes/trunk/ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource/LvgCmdApiResourceImpl.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.uima.lvg.resource;
+package org.apache.ctakes.lvg.resource;
 
 import java.io.File;
 
@@ -80,8 +80,8 @@ public class LvgCmdApiResourceImpl
 	    		changeCurrentWorkingDirectory(lvgDir);
 	    	}
 
-	    	// See http://lexsrv2.nlm.nih.gov/SPECIALIST/Projects/lvg/2008/docs/userDoc/index.html
-	        // See http://lexsrv3.nlm.nih.gov/SPECIALIST/Projects/lvg/2008/docs/designDoc/UDF/flow/index.html        
+	    	// See http://lexsrv2.nlm.nih.gov/SPECIALIST/Projects/ctakes-lvg/2008/docs/userDoc/index.html
+	        // See http://lexsrv3.nlm.nih.gov/SPECIALIST/Projects/ctakes-lvg/2008/docs/designDoc/UDF/flow/index.html        
 	        // Lower-case the terms and then uninflect
 	        // f = using flow components (in this order) 
 	        //     l = lower case
@@ -141,9 +141,9 @@ public class LvgCmdApiResourceImpl
      * For example, if LVG project is installed into   <br>
      *   /pipeline/LVG                                 <br>
      * with the lvg.properties file therefore in       <br>
-     *   /pipeline/LVG/resources/lvg/data/config/      <br>
+     *   /pipeline/ctakes-lvg/resources/ctakes-lvg/data/config/      <br>
      * this method will return                         <br>
-     *   /pipeline/LVG/resources/lvg                   <br>
+     *   /pipeline/ctakes-lvg/resources/lvg                   <br>
      *  
      */
     private String getLvgDir(File configFile) {
@@ -169,7 +169,7 @@ public class LvgCmdApiResourceImpl
     
     /** 
      * An LvgCmdApi takes a term from the input and returns a vector of strings. 
-     * @see edu.mayo.bmi.uima.lvg.resource.LvgCmdApiResource#getLvg()
+     * @see org.apache.ctakes.lvg.resource.LvgCmdApiResource#getLvg()
      */
     public LvgCmdApi getLvg() {
     	return lvg;

Modified: incubator/ctakes/trunk/ctakes-ne-contexts/README
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-ne-contexts/README?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-ne-contexts/README (original)
+++ incubator/ctakes/trunk/ctakes-ne-contexts/README Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@ In fact, the "negation annotator" is rea
 Similarly, the "status annotator" is the context annotator configured to identify the status of named entities.  
 
 To better understand the context annotator code you should start by reading the javadocs for the class 
-edu.mayo.bmi.uima.context.ContextAnnotator.java.  It provides a nice conceptual overview of how the code works.  
+org.apache.ctakes.necontexts.ContextAnnotator.java.  It provides a nice conceptual overview of how the code works.  
 
 ##################
 Negation Annotator
@@ -36,7 +36,7 @@ NegationAnnotator.xml
 
 We will start by examining the descriptor file desc/NegationAnnotator.xml.  Open this file with the Component 
 Descriptor Editor.  Select the first tab labeled "Overview" and observe that the analysis engine that is 
-specified is edu.mayo.bmi.uima.context.ContextAnnotator.  There is no "negation annotator" analysis 
+specified is org.apache.ctakes.necontexts.ContextAnnotator.  There is no "negation annotator" analysis 
 engine - we simply configure the ContextAnnotator for the task.  Next select the tab labeled "Parameter Settings".
 
 We will discuss each setting in turn:
@@ -50,11 +50,11 @@ We will discuss each setting in turn:
  - ScopeOrder = LEFT, RIGHT
    The context annotator will look for signs of negation on the left-hand side of a named entity first and then 
    the right-hand side.
- - ContextAnalyzerClass = edu.mayo.bmi.uima.context.negation.NegationContextAnalyzer 
+ - ContextAnalyzerClass = org.apache.ctakes.necontexts.negation.NegationContextAnalyzer 
    The context analyzer looks at the context (e.g. the 10 words on the left or right of the named entity) and 
    determines if the named entity should be negated.  If it should, then the negation context analyzer will 
    generate a context hit to be consumed by the context hit consumer (see below.)
- - ContextHitConsumerClass = edu.mayo.bmi.uima.context.negation.NegationContextHitConsumer
+ - ContextHitConsumerClass = org.apache.ctakes.necontexts.negation.NegationContextHitConsumer
    The context hit consumer handles context hits generated by the context analyzer.  In this case, the negation 
    context hit consumer simply sets the certainty of a named entity to -1 which indicates that it has been negated.
  - WindowAnnotationClass = edu.mayo.bmi.uima.common.type.Sentence
@@ -71,7 +71,7 @@ So, the work of negating a named entity 
  2) updating the status of NamedEntities by the NegationContextHitConsumer.  
  
 The former is a pretty lightweight wrapper around another class which has all of the negation pattern finding 
-logic - edu.mayo.bmi.fsm.machine.NegationFSM.  If you want to update the pattern matching of negation detection, 
+logic - org.apache.ctakes.core.fsm.machine.NegationFSM.  If you want to update the pattern matching of negation detection, 
 then you would have to do it in that class.  
 
 %%%%%%%%%%%%%%%%%%%%%%%
@@ -79,7 +79,7 @@ updating negex patterns
 
 Updating the negation detection patterns will involve either 1) trial and error experimentation or 2) understanding how
 the the NegationFSM works.  The rules, patterns, words that identify negation are hard-coded into the class 
-edu.mayo.bmi.fsm.machine.NegationFSM which is found in the core project.  I would suggest starting off with the 
+org.apache.ctakes.core.fsm.machine.NegationFSM which is found in the core project.  I would suggest starting off with the 
 trial-and-error approach.  For example, if you wanted to add "impossible" to the lexicon of negation words, 
 then you could try adding it to the the _negAdjectivesSet and test the behavior.  
 
@@ -90,6 +90,6 @@ Status Annotator
 
 The way the status annotator works mirrors very closely how the negation annotator works.  
 You are encouraged to read the above section, examine the parameter settings given for desc/StatusAnnotator.xml, 
-and look at edu.mayo.bmi.fsm.machine.StatusIndicatorFSM.  
+and look at org.apache.ctakes.core.fsm.machine.StatusIndicatorFSM.  
 
 

Modified: incubator/ctakes/trunk/ctakes-ne-contexts/desc/NegationAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-ne-contexts/desc/NegationAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-ne-contexts/desc/NegationAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-ne-contexts/desc/NegationAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>
-<annotatorImplementationName>edu.mayo.bmi.uima.context.ContextAnnotator</annotatorImplementationName>
+<annotatorImplementationName>org.apache.ctakes.necontexts.ContextAnnotator</annotatorImplementationName>
 <analysisEngineMetaData>
 <name>NegationAnnotator</name>
 <configurationParameters>
@@ -104,7 +104,7 @@
 <nameValuePair>
 <name>ContextHitConsumerClass</name>
 <value>
-<string>edu.mayo.bmi.uima.context.negation.NegationContextHitConsumer</string>
+<string>org.apache.ctakes.necontexts.negation.NegationContextHitConsumer</string>
 </value>
 </nameValuePair>
 <nameValuePair>
@@ -128,7 +128,7 @@
 <nameValuePair>
 <name>ContextAnalyzerClass</name>
 <value>
-<string>edu.mayo.bmi.uima.context.negation.NegationContextAnalyzer</string>
+<string>org.apache.ctakes.necontexts.negation.NegationContextAnalyzer</string>
 </value>
 </nameValuePair>
 </configurationParameterSettings>
@@ -145,7 +145,7 @@
 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.BaseToken</type>
 </inputs>
 <outputs>
-<type allAnnotatorFeatures="true">edu.mayo.bmi.uima.context.type.ContextAnnotation</type>
+<type allAnnotatorFeatures="true">org.apache.ctakes.necontexts.type.ContextAnnotation</type>
 </outputs>
 <languagesSupported/>
 </capability>

Modified: incubator/ctakes/trunk/ctakes-ne-contexts/desc/StatusAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-ne-contexts/desc/StatusAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-ne-contexts/desc/StatusAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-ne-contexts/desc/StatusAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>
-<annotatorImplementationName>edu.mayo.bmi.uima.context.ContextAnnotator</annotatorImplementationName>
+<annotatorImplementationName>org.apache.ctakes.necontexts.ContextAnnotator</annotatorImplementationName>
 <analysisEngineMetaData>
 <name>StatusAnnotator</name>
 <configurationParameters>
@@ -104,7 +104,7 @@
 <nameValuePair>
 <name>ContextHitConsumerClass</name>
 <value>
-<string>edu.mayo.bmi.uima.context.status.StatusContextHitConsumer</string>
+<string>org.apache.ctakes.necontexts.status.StatusContextHitConsumer</string>
 </value>
 </nameValuePair>
 <nameValuePair>
@@ -128,7 +128,7 @@
 <nameValuePair>
 <name>ContextAnalyzerClass</name>
 <value>
-<string>edu.mayo.bmi.uima.context.status.StatusContextAnalyzer</string>
+<string>org.apache.ctakes.necontexts.status.StatusContextAnalyzer</string>
 </value>
 </nameValuePair>
 </configurationParameterSettings>
@@ -146,7 +146,7 @@
 <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.BaseToken</type>
 </inputs>
 <outputs>
-<type allAnnotatorFeatures="true">edu.mayo.bmi.uima.context.type.ContextAnnotation</type>
+<type allAnnotatorFeatures="true">org.apache.ctakes.necontexts.type.ContextAnnotation</type>
 </outputs>
 <languagesSupported/>
 </capability>

Modified: incubator/ctakes/trunk/ctakes-ne-contexts/resources/launch/ContextAnnotatorTests.launch
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-ne-contexts/resources/launch/ContextAnnotatorTests.launch?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-ne-contexts/resources/launch/ContextAnnotatorTests.launch (original)
+++ incubator/ctakes/trunk/ctakes-ne-contexts/resources/launch/ContextAnnotatorTests.launch Mon Sep 24 22:04:51 2012
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <launchConfiguration type="org.eclipse.jdt.junit.launchconfig">
-<stringAttribute key="bad_container_name" value="\NE contexts\resources\launc"/>
+<stringAttribute key="bad_container_name" value="\ctakes-ne-contexts\resources\launc"/>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/NE contexts/test/src/edu/mayo/bmi/uima/context/ContextAnnotatorTests.java"/>
+<listEntry value="/ctakes-ne-contexts/test/src/main/java/org/apache/ctakes/necontexts/ContextAnnotatorTests.java"/>
 </listAttribute>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
 <listEntry value="1"/>
@@ -12,6 +12,6 @@
 <booleanAttribute key="org.eclipse.jdt.junit.KEEPRUNNING_ATTR" value="false"/>
 <stringAttribute key="org.eclipse.jdt.junit.TESTNAME" value=""/>
 <stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="edu.mayo.bmi.uima.context.ContextAnnotatorTests"/>
+<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="org.apache.ctakes.necontexts.ContextAnnotatorTests"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="NE contexts"/>
 </launchConfiguration>

Modified: incubator/ctakes/trunk/ctakes-ne-contexts/resources/launch/NE_context.launch
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-ne-contexts/resources/launch/NE_context.launch?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-ne-contexts/resources/launch/NE_context.launch (original)
+++ incubator/ctakes/trunk/ctakes-ne-contexts/resources/launch/NE_context.launch Mon Sep 24 22:04:51 2012
@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <launchConfiguration type="org.eclipse.jdt.junit.launchconfig">
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/NE context"/>
+<listEntry value="/ctakes-ne-contexts"/>
 </listAttribute>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
 <listEntry value="4"/>
@@ -12,5 +12,5 @@
 <stringAttribute key="org.eclipse.jdt.junit.TESTNAME" value=""/>
 <stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
 <stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value=""/>
-<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="Context Annotator"/>
+<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="ctakes-ne-contexts"/>
 </launchConfiguration>



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