incubator-ctakes-commits mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From chen...@apache.org
Subject svn commit: r1389618 [5/22] - in /incubator/ctakes/trunk: ./ ctakes-chunker/ ctakes-chunker/desc/ ctakes-chunker/resources/launch/ ctakes-chunker/src/main/java/edu/ ctakes-chunker/src/main/java/org/ ctakes-chunker/src/main/java/org/apache/ ctakes-chunk...
Date Mon, 24 Sep 2012 22:05:23 GMT
Modified: incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>
-  <annotatorImplementationName>org.chboston.cnlp.ctakes.parser.uima.ae.ConstituencyParser</annotatorImplementationName>
+  <annotatorImplementationName>org.apache.ctakes.constituency.parser.ae.ConstituencyParser</annotatorImplementationName>
   <analysisEngineMetaData>
     <name>ConstituencyParserAnnotator</name>
     <description/>
@@ -46,7 +46,7 @@
     </configurationParameterSettings>
     <typeSystemDescription>
       <imports>
-        <import location="../../common-type-system/desc/common_type_system.xml"/>
+        <import location="../../ctakes-type-system/desc/common_type_system.xml"/>
       </imports>
     </typeSystemDescription>
     <typePriorities/>

Modified: incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/AggregateParsingProcessor.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/AggregateParsingProcessor.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/AggregateParsingProcessor.xml (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/AggregateParsingProcessor.xml Mon Sep 24 22:04:51 2012
@@ -27,13 +27,13 @@
       <import location="../ConstituencyParserAnnotator.xml"/>
     </delegateAnalysisEngine>
     <delegateAnalysisEngine key="TokenizerAnnotator">
-      <import location="../../../core/desc/analysis_engine/TokenizerAnnotator.xml"/>
+      <import location="../../../ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/>
     </delegateAnalysisEngine>
     <delegateAnalysisEngine key="SentenceDetectorAnnotator">
-      <import location="../../../core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
+      <import location="../../../ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
     </delegateAnalysisEngine>
     <delegateAnalysisEngine key="SimpleSegmentAnnotator">
-      <import location="../../../clinical documents pipeline/desc/analysis_engine/SimpleSegmentAnnotator.xml"/>
+      <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/SimpleSegmentAnnotator.xml"/>
     </delegateAnalysisEngine>
   </delegateAnalysisEngineSpecifiers>
   <analysisEngineMetaData>

Modified: incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/ParserEvaluatorAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/ParserEvaluatorAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/ParserEvaluatorAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/desc/analysis_engine/ParserEvaluatorAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>
-  <annotatorImplementationName>org.chboston.cnlp.ctakes.parser.uima.ae.ParserEvaluationAnnotator</annotatorImplementationName>
+  <annotatorImplementationName>org.apache.ctakes.constituency.parser.ae.ParserEvaluationAnnotator</annotatorImplementationName>
   <analysisEngineMetaData>
     <name>ParserEvaluatorAnnotator</name>
     <description/>
@@ -46,7 +46,7 @@
     </configurationParameterSettings>
     <typeSystemDescription>
       <imports>
-        <import location="../../../common-type-system/desc/common_type_system.xml"/>
+        <import location="../../../ctakes-type-system/desc/common_type_system.xml"/>
         <import location="../TypeSystem.xml"/>
       </imports>
     </typeSystemDescription>

Modified: incubator/ctakes/trunk/ctakes-constituency-parser/desc/cas_consumer/ParseTreeWriterConsumer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/desc/cas_consumer/ParseTreeWriterConsumer.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/desc/cas_consumer/ParseTreeWriterConsumer.xml (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/desc/cas_consumer/ParseTreeWriterConsumer.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-  <implementationName>org.chboston.cnlp.ctakes.parser.uima.co.ParserTreeWriterConsumer</implementationName>
+  <implementationName>org.apache.ctakes.constituency.parser.uima.co.ParserTreeWriterConsumer</implementationName>
   <processingResourceMetaData>
     <name>ParseTreeWriterConsumer</name>
     <description/>

Modified: incubator/ctakes/trunk/ctakes-constituency-parser/desc/types/LabeledTree.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/desc/types/LabeledTree.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/desc/types/LabeledTree.xml (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/desc/types/LabeledTree.xml Mon Sep 24 22:04:51 2012
@@ -29,7 +29,7 @@
   </imports>
   <types>
     <typeDescription>
-      <name>org.chboston.cnlp.ctakes.parser.uima.type.BooleanLabeledTree</name>
+      <name>org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree</name>
       <description/>
       <supertypeName>uima.tcas.Annotation</supertypeName>
       <features>

Modified: incubator/ctakes/trunk/ctakes-constituency-parser/metadata/install.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/metadata/install.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/metadata/install.xml (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/metadata/install.xml Mon Sep 24 22:04:51 2012
@@ -39,7 +39,7 @@
 			<ACTION>set_env_variable</ACTION>
 			<PARAMETERS>
 				<COMMENTS></COMMENTS>
-				<VAR_VALUE>$main_root/bin;/Applications/eclipse/plugins/org.junit_4.8.1.v4_8_1_v20100427-1100/junit.jar;/Applications/eclipse/plugins/org.hamcrest.core_1.1.0.v20090501071000.jar;$main_root/bin;$main_root/../core/bin;$main_root/../core/resources;$main_root/../core/lib/opennlp-tools-1.4.3.jar;$main_root/../core/lib/maxent-2.5.0.jar;$main_root/../core/lib/jdom.jar;$main_root/../core/lib/log4j-1.2.8.jar;$main_root/../core/lib/lucene-core-3.0.2.jar;$main_root/../core/lib/trove.jar;$main_root/../core/lib/OpenAI_FSM.jar;/Applications/apache-uima/lib/uimaj-bootstrap.jar;/Applications/apache-uima/lib/uima-tools.jar;/Applications/apache-uima/lib/uima-examples.jar;/Applications/apache-uima/lib/uima-document-annotation.jar;/Applications/apache-uima/lib/uima-cpe.jar;/Applications/apache-uima/lib/uima-core.jar;/Applications/apache-uima/lib/uima-adapter-vinci.jar;/Applications/apache-uima/lib/uima-adapter-soap.jar;/Applications/apache-uima/lib/jVinci.jar;/Applications/eclipse/plugins/o
 rg.junit_4.8.1.v4_8_1_v20100427-1100/junit.jar;/Applications/eclipse/plugins/org.hamcrest.core_1.1.0.v20090501071000.jar;$main_root/../core/lib/MIRUtility.jar;$main_root/../NE contexts/bin;$main_root/../dictionary lookup/bin;$main_root/../dictionary lookup/resources;$main_root/../context dependent tokenizer/bin;$main_root/../chunker/bin;$main_root/../chunker/resources;$main_root/../POS tagger/bin;$main_root/../POS tagger/resources;$main_root/../LVG/bin;$main_root/../LVG/resources;$main_root/../LVG/lib/lvg2008dist.jar;$main_root/resources;$main_root/desc;$main_root/../clinical documents pipeline/bin;$main_root/../clinical documents pipeline/resources;$main_root/../document preprocessor/bin;$main_root/../document preprocessor/lib/log4j-1.2.8.jar;$main_root/../document preprocessor/resources;$main_root/../document preprocessor/lib/xercesImpl.jar;$main_root/../document preprocessor/lib/xml-apis.jar;$main_root/../document preprocessor/lib/xmlParserAPIs.jar;$main_root/lib/libsvm-2
 .91.jar;$main_root/lib/lucene-core-3.0.2.jar;$main_root/resources;$main_root/desc;$main_root/lib/libsvm-2.91.jar;$main_root/lib/lucene-core-3.0.2.jar;</VAR_VALUE>
+				<VAR_VALUE>$main_root/bin;/Applications/eclipse/plugins/org.junit_4.8.1.v4_8_1_v20100427-1100/junit.jar;/Applications/eclipse/plugins/org.hamcrest.core_1.1.0.v20090501071000.jar;$main_root/bin;$main_root/../ctakes-core/bin;$main_root/../ctakes-core/resources;$main_root/../ctakes-core/lib/opennlp-tools-1.4.3.jar;$main_root/../ctakes-core/lib/maxent-2.5.0.jar;$main_root/../ctakes-core/lib/jdom.jar;$main_root/../ctakes-core/lib/log4j-1.2.8.jar;$main_root/../ctakes-core/lib/lucene-core-3.0.2.jar;$main_root/../ctakes-core/lib/trove.jar;$main_root/../ctakes-core/lib/OpenAI_FSM.jar;/Applications/apache-uima/lib/uimaj-bootstrap.jar;/Applications/apache-uima/lib/uima-tools.jar;/Applications/apache-uima/lib/uima-examples.jar;/Applications/apache-uima/lib/uima-document-annotation.jar;/Applications/apache-uima/lib/uima-cpe.jar;/Applications/apache-uima/lib/uima-core.jar;/Applications/apache-uima/lib/uima-adapter-vinci.jar;/Applications/apache-uima/lib/uima-adapter-soap.jar;/Applicat
 ions/apache-uima/lib/jVinci.jar;/Applications/eclipse/plugins/org.junit_4.8.1.v4_8_1_v20100427-1100/junit.jar;/Applications/eclipse/plugins/org.hamcrest.core_1.1.0.v20090501071000.jar;$main_root/../ctakes-core/lib/MIRUtility.jar;$main_root/../ctakes-ne-contexts/bin;$main_root/../ctakes-dictionary-lookup/bin;$main_root/../ctakes-dictionary-lookup/resources;$main_root/../ctakes-context-tokenizer/bin;$main_root/../ctakes-chunker/bin;$main_root/../ctakes-chunker/resources;$main_root/../ctakes-pos-tagger/bin;$main_root/../ctakes-pos-tagger/resources;$main_root/../ctakes-lvg/bin;$main_root/../ctakes-lvg/resources;$main_root/../ctakes-lvg/lib/lvg2008dist.jar;$main_root/resources;$main_root/desc;$main_root/../ctakes-clinical-pipeline/bin;$main_root/../ctakes-clinical-pipeline/resources;$main_root/../ctakes-preprocessor/bin;$main_root/../ctakes-preprocessor/lib/log4j-1.2.8.jar;$main_root/../ctakes-preprocessor/resources;$main_root/../ctakes-preprocessor/lib/xercesImpl.jar;$main_root/
 ../ctakes-preprocessor/lib/xml-apis.jar;$main_root/../ctakes-preprocessor/lib/xmlParserAPIs.jar;$main_root/lib/libsvm-2.91.jar;$main_root/lib/lucene-core-3.0.2.jar;$main_root/resources;$main_root/desc;$main_root/lib/libsvm-2.91.jar;$main_root/lib/lucene-core-3.0.2.jar;</VAR_VALUE>
 				<VAR_NAME>CLASSPATH</VAR_NAME>
 			</PARAMETERS>
 		</PROCESS>

Copied: incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/MaxentParserWrapper.java (from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/MaxentParserWrapper.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/MaxentParserWrapper.java?p2=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/MaxentParserWrapper.java&p1=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/MaxentParserWrapper.java&r1=1388196&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/MaxentParserWrapper.java (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/MaxentParserWrapper.java Mon Sep 24 22:04:51 2012
@@ -1,4 +1,22 @@
-package org.chboston.cnlp.ctakes.parser;
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.ctakes.constituency.parser;
 
 import java.io.File;
 import java.io.FileInputStream;
@@ -36,6 +54,7 @@ import org.apache.uima.jcas.cas.FSArray;
 import org.apache.uima.jcas.cas.StringArray;
 import org.apache.uima.jcas.tcas.Annotation;
 
+import org.apache.ctakes.core.util.DocumentIDAnnotationUtil;
 import org.apache.ctakes.typesystem.type.syntax.BaseToken;
 import org.apache.ctakes.typesystem.type.syntax.NewlineToken;
 import org.apache.ctakes.typesystem.type.syntax.PunctuationToken;
@@ -43,7 +62,6 @@ import org.apache.ctakes.typesystem.type
 import org.apache.ctakes.typesystem.type.syntax.TopTreebankNode;
 import org.apache.ctakes.typesystem.type.syntax.TreebankNode;
 import org.apache.ctakes.typesystem.type.textspan.Sentence;
-import edu.mayo.bmi.uima.core.util.DocumentIDAnnotationUtil;
 
 public class MaxentParserWrapper implements ParserWrapper {
 

Copied: incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ParserWrapper.java (from r1388103, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/ParserWrapper.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ParserWrapper.java?p2=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ParserWrapper.java&p1=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/ParserWrapper.java&r1=1388103&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/ParserWrapper.java (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ParserWrapper.java Mon Sep 24 22:04:51 2012
@@ -1,4 +1,22 @@
-package org.chboston.cnlp.ctakes.parser;
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.ctakes.constituency.parser;
 
 import org.apache.uima.cas.FSIterator;
 import org.apache.uima.jcas.JCas;

Copied: incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ConstituencyParser.java (from r1388103, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/ae/ConstituencyParser.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ConstituencyParser.java?p2=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ConstituencyParser.java&p1=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/ae/ConstituencyParser.java&r1=1388103&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/ae/ConstituencyParser.java (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ConstituencyParser.java Mon Sep 24 22:04:51 2012
@@ -1,17 +1,35 @@
-package org.chboston.cnlp.ctakes.parser.uima.ae;
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.ctakes.constituency.parser.ae;
 
 import java.io.FileNotFoundException;
 
+import org.apache.ctakes.constituency.parser.MaxentParserWrapper;
+import org.apache.ctakes.constituency.parser.ParserWrapper;
+import org.apache.ctakes.core.resource.FileLocator;
 import org.apache.log4j.Logger;
 import org.apache.uima.UimaContext;
 import org.apache.uima.analysis_component.JCasAnnotator_ImplBase;
 import org.apache.uima.analysis_engine.AnalysisEngineProcessException;
 import org.apache.uima.jcas.JCas;
 import org.apache.uima.resource.ResourceInitializationException;
-import org.chboston.cnlp.ctakes.parser.MaxentParserWrapper;
-import org.chboston.cnlp.ctakes.parser.ParserWrapper;
 
-import edu.mayo.bmi.uima.core.resource.FileLocator;
 
 public class ConstituencyParser extends JCasAnnotator_ImplBase {
 

Copied: incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ParserEvaluationAnnotator.java (from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/ae/ParserEvaluationAnnotator.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ParserEvaluationAnnotator.java?p2=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ParserEvaluationAnnotator.java&p1=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/ae/ParserEvaluationAnnotator.java&r1=1388196&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/ae/ParserEvaluationAnnotator.java (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ParserEvaluationAnnotator.java Mon Sep 24 22:04:51 2012
@@ -1,4 +1,22 @@
-package org.chboston.cnlp.ctakes.parser.uima.ae;
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.ctakes.constituency.parser.ae;
 
 import java.io.File;
 import java.io.FileInputStream;

Copied: incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeExtractor.java (from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/treekernel/TreeExtractor.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeExtractor.java?p2=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeExtractor.java&p1=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/treekernel/TreeExtractor.java&r1=1388196&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/treekernel/TreeExtractor.java (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeExtractor.java Mon Sep 24 22:04:51 2012
@@ -16,17 +16,17 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package org.chboston.cnlp.ctakes.parser.treekernel;
+package org.apache.ctakes.constituency.parser.treekernel;
 
 import java.util.ArrayList;
 
 import org.apache.uima.jcas.JCas;
 import org.apache.uima.jcas.cas.FSArray;
-import org.chboston.cnlp.util.SimpleTree;
 
 import org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode;
 import org.apache.ctakes.typesystem.type.syntax.TopTreebankNode;
 import org.apache.ctakes.typesystem.type.syntax.TreebankNode;
+import org.apache.ctakes.typesystem.util.SimpleTree;
 
 /*
  * This class extracts tree relations between two nodes in a tree (or from 2 separate trees).

Copied: incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeKernel.java (from r1388092, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/treekernel/TreeKernel.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeKernel.java?p2=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeKernel.java&p1=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/treekernel/TreeKernel.java&r1=1388092&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/treekernel/TreeKernel.java (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeKernel.java Mon Sep 24 22:04:51 2012
@@ -16,12 +16,12 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package org.chboston.cnlp.ctakes.parser.treekernel;
+package org.apache.ctakes.constituency.parser.treekernel;
 
 import opennlp.tools.parser.Parse;
 
-import org.chboston.cnlp.ctakes.kernel.Kernel;
-import org.chboston.cnlp.ctakes.parser.util.TreeUtils;
+import org.apache.ctakes.constituency.parser.util.TreeUtils;
+import org.apache.ctakes.typesystem.kernel.Kernel;
 
 import java.util.HashMap;
 import java.util.List;

Copied: incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/uima/co/ParserTreeWriterConsumer.java (from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/co/ParserTreeWriterConsumer.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/uima/co/ParserTreeWriterConsumer.java?p2=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/uima/co/ParserTreeWriterConsumer.java&p1=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/co/ParserTreeWriterConsumer.java&r1=1388196&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/co/ParserTreeWriterConsumer.java (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/uima/co/ParserTreeWriterConsumer.java Mon Sep 24 22:04:51 2012
@@ -1,4 +1,22 @@
-package org.chboston.cnlp.ctakes.parser.uima.co;
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.ctakes.constituency.parser.uima.co;
 
 import java.io.FileNotFoundException;
 import java.io.FileOutputStream;

Copied: incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/AnnotationTreeUtils.java (from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/util/AnnotationTreeUtils.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/AnnotationTreeUtils.java?p2=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/AnnotationTreeUtils.java&p1=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/util/AnnotationTreeUtils.java&r1=1388196&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/util/AnnotationTreeUtils.java (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/AnnotationTreeUtils.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package org.chboston.cnlp.ctakes.parser.util;
+package org.apache.ctakes.constituency.parser.util;
 
 import java.util.Iterator;
 

Copied: incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/TreeUtils.java (from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/util/TreeUtils.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/TreeUtils.java?p2=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/TreeUtils.java&p1=incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/util/TreeUtils.java&r1=1388196&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/util/TreeUtils.java (original)
+++ incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/TreeUtils.java Mon Sep 24 22:04:51 2012
@@ -1,11 +1,29 @@
-package org.chboston.cnlp.ctakes.parser.util;
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.ctakes.constituency.parser.util;
 
 import opennlp.tools.parser.Parse;
 
-import org.chboston.cnlp.util.SimpleTree;
 
 import org.apache.ctakes.typesystem.type.syntax.TopTreebankNode;
 import org.apache.ctakes.typesystem.type.syntax.TreebankNode;
+import org.apache.ctakes.typesystem.util.SimpleTree;
 
 import java.util.List;
 import java.util.ArrayList;

Modified: incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/AggregateAE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/AggregateAE.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/AggregateAE.xml (original)
+++ incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/AggregateAE.xml Mon Sep 24 22:04:51 2012
@@ -24,16 +24,16 @@
 <primitive>false</primitive>
 <delegateAnalysisEngineSpecifiers>
 <delegateAnalysisEngine key="SentenceDetectorAnnotator">
-<import location="file:../../../core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
+<import location="file:../../../ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
 </delegateAnalysisEngine>
 <delegateAnalysisEngine key="SimpleSegmentAnnotator">
-<import location="file:../../../core/desc/analysis_engine/SimpleSegmentAnnotator.xml"/>
+<import location="file:../../../ctakes-core/desc/analysis_engine/SimpleSegmentAnnotator.xml"/>
 </delegateAnalysisEngine>
 <delegateAnalysisEngine key="ContextDependentTokenizerAnnotator">
 <import location="file:ContextDependentTokenizerAnnotator.xml"/>
 </delegateAnalysisEngine>
 <delegateAnalysisEngine key="TokenizerAnnotator">
-<import location="file:../../../core/desc/analysis_engine/TokenizerAnnotator.xml"/>
+<import location="file:../../../ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/>
 </delegateAnalysisEngine>
 </delegateAnalysisEngineSpecifiers>
 <analysisEngineMetaData>

Modified: incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/ContextDependentTokenizerAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/ContextDependentTokenizerAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/ContextDependentTokenizerAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/ContextDependentTokenizerAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>
-<annotatorImplementationName>edu.mayo.bmi.uima.cdt.ae.ContextDependentTokenizerAnnotator</annotatorImplementationName>
+<annotatorImplementationName>org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator</annotatorImplementationName>
 <analysisEngineMetaData>
 <name>ContextDependentTokenizerAnnotator</name>
 <description>Discovers tokens based on context.</description>

Modified: incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/TestTAE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/TestTAE.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/TestTAE.xml (original)
+++ incubator/ctakes/trunk/ctakes-context-tokenizer/desc/analysis_engine/TestTAE.xml Mon Sep 24 22:04:51 2012
@@ -24,16 +24,16 @@
 <primitive>false</primitive>
 <delegateAnalysisEngineSpecifiers>
 <delegateAnalysisEngine key="SentenceDetectorAnnotator">
-<import location="file:../../../core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
+<import location="file:../../../ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
 </delegateAnalysisEngine>
 <delegateAnalysisEngine key="SimpleSegmentAnnotator">
-<import location="file:../../../core/desc/analysis_engine/SimpleSegmentAnnotator.xml"/>
+<import location="file:../../../ctakes-core/desc/analysis_engine/SimpleSegmentAnnotator.xml"/>
 </delegateAnalysisEngine>
 <delegateAnalysisEngine key="ContextDependentTokenizerAnnotator">
 <import location="file:ContextDependentTokenizerAnnotator.xml"/>
 </delegateAnalysisEngine>
 <delegateAnalysisEngine key="TokenizerAnnotator">
-<import location="file:../../../core/desc/analysis_engine/TokenizerAnnotator.xml"/>
+<import location="file:../../../ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/>
 </delegateAnalysisEngine>
 </delegateAnalysisEngineSpecifiers>
 <analysisEngineMetaData>

Copied: incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/ae/ContextDependentTokenizerAnnotator.java (from r1388196, incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/edu/mayo/bmi/uima/cdt/ae/ContextDependentTokenizerAnnotator.java)
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/ae/ContextDependentTokenizerAnnotator.java?p2=incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/ae/ContextDependentTokenizerAnnotator.java&p1=incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/edu/mayo/bmi/uima/cdt/ae/ContextDependentTokenizerAnnotator.java&r1=1388196&r2=1389618&rev=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/edu/mayo/bmi/uima/cdt/ae/ContextDependentTokenizerAnnotator.java (original)
+++ incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/ae/ContextDependentTokenizerAnnotator.java Mon Sep 24 22:04:51 2012
@@ -16,7 +16,7 @@
  * specific language governing permissions and limitations
  * under the License.
  */
-package edu.mayo.bmi.uima.cdt.ae;
+package org.apache.ctakes.contexttokenizer.ae;
 
 import java.util.ArrayList;
 import java.util.Iterator;
@@ -33,29 +33,30 @@ import org.apache.uima.jcas.JCas;
 import org.apache.uima.jcas.JFSIndexRepository;
 import org.apache.uima.resource.ResourceInitializationException;
 
-import edu.mayo.bmi.fsm.machine.DateFSM;
-import edu.mayo.bmi.fsm.machine.FractionFSM;
-import edu.mayo.bmi.fsm.machine.MeasurementFSM;
-import edu.mayo.bmi.fsm.machine.PersonTitleFSM;
-import edu.mayo.bmi.fsm.machine.RangeFSM;
-import edu.mayo.bmi.fsm.machine.RomanNumeralFSM;
-import edu.mayo.bmi.fsm.machine.TimeFSM;
-import edu.mayo.bmi.fsm.output.DateToken;
-import edu.mayo.bmi.fsm.output.FractionToken;
-import edu.mayo.bmi.fsm.output.MeasurementToken;
-import edu.mayo.bmi.fsm.output.PersonTitleToken;
-import edu.mayo.bmi.fsm.output.RangeToken;
-import edu.mayo.bmi.fsm.output.RomanNumeralToken;
-import edu.mayo.bmi.fsm.output.TimeToken;
-import edu.mayo.bmi.fsm.token.BaseToken;
-import edu.mayo.bmi.uima.core.ae.TokenizerAnnotator;
-import edu.mayo.bmi.uima.core.fsm.adapters.ContractionTokenAdapter;
-import edu.mayo.bmi.uima.core.fsm.adapters.DecimalTokenAdapter;
-import edu.mayo.bmi.uima.core.fsm.adapters.IntegerTokenAdapter;
-import edu.mayo.bmi.uima.core.fsm.adapters.NewlineTokenAdapter;
-import edu.mayo.bmi.uima.core.fsm.adapters.PunctuationTokenAdapter;
-import edu.mayo.bmi.uima.core.fsm.adapters.SymbolTokenAdapter;
-import edu.mayo.bmi.uima.core.fsm.adapters.WordTokenAdapter;
+
+import org.apache.ctakes.core.ae.TokenizerAnnotator;
+import org.apache.ctakes.core.fsm.adapters.ContractionTokenAdapter;
+import org.apache.ctakes.core.fsm.adapters.DecimalTokenAdapter;
+import org.apache.ctakes.core.fsm.adapters.IntegerTokenAdapter;
+import org.apache.ctakes.core.fsm.adapters.NewlineTokenAdapter;
+import org.apache.ctakes.core.fsm.adapters.PunctuationTokenAdapter;
+import org.apache.ctakes.core.fsm.adapters.SymbolTokenAdapter;
+import org.apache.ctakes.core.fsm.adapters.WordTokenAdapter;
+import org.apache.ctakes.core.fsm.machine.DateFSM;
+import org.apache.ctakes.core.fsm.machine.FractionFSM;
+import org.apache.ctakes.core.fsm.machine.MeasurementFSM;
+import org.apache.ctakes.core.fsm.machine.PersonTitleFSM;
+import org.apache.ctakes.core.fsm.machine.RangeFSM;
+import org.apache.ctakes.core.fsm.machine.RomanNumeralFSM;
+import org.apache.ctakes.core.fsm.machine.TimeFSM;
+import org.apache.ctakes.core.fsm.output.DateToken;
+import org.apache.ctakes.core.fsm.output.FractionToken;
+import org.apache.ctakes.core.fsm.output.MeasurementToken;
+import org.apache.ctakes.core.fsm.output.PersonTitleToken;
+import org.apache.ctakes.core.fsm.output.RangeToken;
+import org.apache.ctakes.core.fsm.output.RomanNumeralToken;
+import org.apache.ctakes.core.fsm.output.TimeToken;
+import org.apache.ctakes.core.fsm.token.BaseToken;
 import org.apache.ctakes.typesystem.type.syntax.ContractionToken;
 import org.apache.ctakes.typesystem.type.syntax.NewlineToken;
 import org.apache.ctakes.typesystem.type.syntax.NumToken;

Modified: incubator/ctakes/trunk/ctakes-core/README
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/README?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/README (original)
+++ incubator/ctakes/trunk/ctakes-core/README Mon Sep 24 22:04:51 2012
@@ -56,7 +56,7 @@ It can extend an annotation to encompass
 It can be configured to delete annotations of type A that are subsumed by other annotations of type A 
 if you only want the longest annotations of the given type to be kept.
 
-See the javadoc for edu.mayo.bmi.uima.core.ae.OverlapAnnotator for more details.
+See the javadoc for org.apache.ctakes.core.ae.OverlapAnnotator for more details.
 
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%
@@ -90,7 +90,7 @@ Parameters:
 TokenizerAnnotator.xml
 
 Tokenizes text.    
-See classes edu.mayo.bmi.uima.core.ae.TokenizerAnnotatorPTB and edu.mayo.bmi.nlp.tokenizer.Tokenizer
+See classes org.apache.ctakes.core.ae.TokenizerAnnotatorPTB and org.apache.ctakes.core.nlp.tokenizer.Tokenizer
 for implementation details.
 
 Parameters:

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/CopyAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/CopyAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/CopyAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/CopyAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>
-  <annotatorImplementationName>edu.mayo.bmi.uima.core.ae.CopyAnnotator</annotatorImplementationName>
+  <annotatorImplementationName>org.apache.ctakes.core.ae.CopyAnnotator</annotatorImplementationName>
   <analysisEngineMetaData>
     <name>CopyAnnotator</name>
     <description>Utility annotator that copy's data from an existing JCas object into a new JCas object.</description>
@@ -76,7 +76,7 @@
     </configurationParameterSettings>
     <typeSystemDescription>
       <imports>
-        <import location="../../../common-type-system/desc/common_type_system.xml"/>
+        <import location="../../../ctakes-type-system/desc/common_type_system.xml"/>
       </imports>
       <types>
         <typeDescription>

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/FilterAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/FilterAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/FilterAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/FilterAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>
-  <annotatorImplementationName>edu.mayo.bmi.uima.core.ae.FilterAnnotator</annotatorImplementationName>
+  <annotatorImplementationName>org.apache.ctakes.core.ae.FilterAnnotator</annotatorImplementationName>
   <analysisEngineMetaData>
     <name>filterAnnotator</name>
     <description>Removes annotations other than the one specified form CAS.

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/NullAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/NullAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/NullAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/NullAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>
-<annotatorImplementationName>edu.mayo.bmi.uima.core.ae.NullAnnotator</annotatorImplementationName>
+<annotatorImplementationName>org.apache.ctakes.core.ae.NullAnnotator</annotatorImplementationName>
 <analysisEngineMetaData>
 <name>null annotator</name>
 <description>This annotator does nothing.  The process method is overridden but is empty.  None of the other methods are overriden.  This annotator may be useful if you are using the CPE GUI and you are required to specify an analysis engine but you don't actually want to specify one.  </description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/OverlapAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/OverlapAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/OverlapAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/OverlapAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>
-<annotatorImplementationName>edu.mayo.bmi.uima.core.ae.OverlapAnnotator</annotatorImplementationName>
+<annotatorImplementationName>org.apache.ctakes.core.ae.OverlapAnnotator</annotatorImplementationName>
 <analysisEngineMetaData>
 <name>OverlapAnnotator</name>
 <description></description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>
-<annotatorImplementationName>edu.mayo.bmi.uima.core.ae.SentenceDetector</annotatorImplementationName>
+<annotatorImplementationName>org.apache.ctakes.core.ae.SentenceDetector</annotatorImplementationName>
 <analysisEngineMetaData>
 <name>Sentence Detector annotator</name>
 <description>Discovers sentence boundaries.</description>
@@ -68,7 +68,7 @@
 <externalResourceDependency>
 <key>MaxentModel</key>
 <description></description>
-<interfaceName>edu.mayo.bmi.uima.core.resource.MaxentModelResource</interfaceName>
+<interfaceName>org.apache.ctakes.core.resource.MaxentModelResource</interfaceName>
 <optional>false</optional>
 </externalResourceDependency>
 </externalResourceDependencies>
@@ -80,7 +80,7 @@
 <fileResourceSpecifier>
 <fileUrl>file:sentdetect/sdmed.mod</fileUrl>
 </fileResourceSpecifier>
-<implementationName>edu.mayo.bmi.uima.core.resource.SuffixMaxentModelResourceImpl</implementationName>
+<implementationName>org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl</implementationName>
 </externalResource>
 </externalResources>
 <externalResourceBindings>

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SimpleSegmentAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SimpleSegmentAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SimpleSegmentAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SimpleSegmentAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>
-<annotatorImplementationName>edu.mayo.bmi.uima.core.ae.SimpleSegmentAnnotator</annotatorImplementationName>
+<annotatorImplementationName>org.apache.ctakes.core.ae.SimpleSegmentAnnotator</annotatorImplementationName>
 <analysisEngineMetaData>
 <name>SimpleSegmentAnnotator</name>
 <description></description>
@@ -40,7 +40,7 @@
 <configurationParameterSettings/>
 <typeSystemDescription>
 <imports>
-<import location="../../../common-type-system/desc/common_type_system.xml"/>
+<import location="../../../ctakes-type-system/desc/common_type_system.xml"/>
 </imports>
 </typeSystemDescription>
 <typePriorities/>

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SimpleSegmentWithTagsAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SimpleSegmentWithTagsAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SimpleSegmentWithTagsAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/SimpleSegmentWithTagsAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>
-  <annotatorImplementationName>edu.mayo.bmi.uima.core.ae.SimpleSegmentWithTagsAnnotator</annotatorImplementationName>
+  <annotatorImplementationName>org.apache.ctakes.core.ae.SimpleSegmentWithTagsAnnotator</annotatorImplementationName>
   <analysisEngineMetaData>
     <name>SimpleSegmentWithTagsAnnotator</name>
     <description>This annotator adds segments to text documents with tags that are in this format - [start section id="1234"]....[end section id="1234"].
@@ -48,7 +48,7 @@ However, the section ids are specific to
     </configurationParameterSettings>
     <typeSystemDescription>
       <imports>
-        <import location="../../../common-type-system/desc/common_type_system.xml"/>
+        <import location="../../../ctakes-type-system/desc/common_type_system.xml"/>
       </imports>
     </typeSystemDescription>
     <typePriorities/>

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>
-<annotatorImplementationName>edu.mayo.bmi.uima.core.ae.TokenizerAnnotatorPTB</annotatorImplementationName>
+<annotatorImplementationName>org.apache.ctakes.core.ae.TokenizerAnnotatorPTB</annotatorImplementationName>
 <analysisEngineMetaData>
 <name>TokenizerAnnotatorPTB</name>
 <description>Discovers tokens in the given text, following Penn TreeBank tokenization rules.  These tokens consist of words, punctuation, etc...</description>
@@ -47,7 +47,7 @@
 </configurationParameterSettings>
 <typeSystemDescription>
 <imports>
-<import location="../../../common-type-system/desc/common_type_system.xml"/>
+<import location="../../../ctakes-type-system/desc/common_type_system.xml"/>
 </imports>
 </typeSystemDescription>
 <typePriorities/>

Modified: incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotatorVersion1.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotatorVersion1.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotatorVersion1.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/analysis_engine/TokenizerAnnotatorVersion1.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>
-<annotatorImplementationName>edu.mayo.bmi.uima.core.ae.TokenizerAnnotator</annotatorImplementationName>
+<annotatorImplementationName>org.apache.ctakes.core.ae.TokenizerAnnotator</annotatorImplementationName>
 <analysisEngineMetaData>
 <name>TokenizerAnnotator</name>
 <description>Tokenizer used for the first release of cTAKES.  This tokenizer was replaced by one that follows PTB rules as the default for verson 2 of cTAKES.</description>
@@ -60,7 +60,7 @@
 </configurationParameterSettings>
 <typeSystemDescription>
 <imports>
-<import location="../../../common-type-system/desc/common_type_system.xml"/>
+<import location="../../../ctakes-type-system/desc/common_type_system.xml"/>
 </imports>
 </typeSystemDescription>
 <typePriorities/>
@@ -86,7 +86,7 @@
 <externalResourceDependency>
 <key>HyphFreqTable</key>
 <description></description>
-<interfaceName>edu.mayo.bmi.uima.core.resource.StringIntegerMapResource</interfaceName>
+<interfaceName>org.apache.ctakes.core.resource.StringIntegerMapResource</interfaceName>
 <optional>true</optional>
 </externalResourceDependency>
 </externalResourceDependencies>
@@ -98,7 +98,7 @@
 <fileResourceSpecifier>
 <fileUrl>file:tokenizer/hyphenated.txt</fileUrl>
 </fileResourceSpecifier>
-<implementationName>edu.mayo.bmi.uima.core.resource.StringIntegerMapResourceImpl</implementationName>
+<implementationName>org.apache.ctakes.core.resource.StringIntegerMapResourceImpl</implementationName>
 </externalResource>
 </externalResources>
 <externalResourceBindings>

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/EmbeddedXmlCasConsumer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/EmbeddedXmlCasConsumer.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/EmbeddedXmlCasConsumer.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/EmbeddedXmlCasConsumer.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-  <implementationName>edu.mayo.bmi.uima.core.cc.EmbeddedXmlCasConsumer</implementationName>
+  <implementationName>org.apache.ctakes.core.cc.EmbeddedXmlCasConsumer</implementationName>
   <processingResourceMetaData>
     <name>EmbeddedXmlCasConsumer</name>
     <description>CasConsumer that dumps JCas Annotation objects as embedded XML markup.</description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/FileWriterCasConsumer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/FileWriterCasConsumer.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/FileWriterCasConsumer.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/FileWriterCasConsumer.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-<implementationName>edu.mayo.bmi.uima.core.cc.CasConsumer</implementationName>
+<implementationName>org.apache.ctakes.core.cc.CasConsumer</implementationName>
 <processingResourceMetaData>
 <name>Write CAS to XML file</name>
 <description>Write the CAS to a file as formatted XML</description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/FilesInDirectoryCasConsumer.example.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/FilesInDirectoryCasConsumer.example.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/FilesInDirectoryCasConsumer.example.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/FilesInDirectoryCasConsumer.example.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-<implementationName>edu.mayo.bmi.uima.core.cc.FilesInDirectoryCasConsumer</implementationName>
+<implementationName>org.apache.ctakes.core.cc.FilesInDirectoryCasConsumer</implementationName>
 <processingResourceMetaData>
 <name>FilesInDirectoryCasConsumer</name>
 <description>For each CAS a local file with the document text is written to a directory specifed by a parameter.  This CAS consumer does not make use of any annotation information in the cas except for the document id specified the CommonTypeSystem.xml descriptor.  The document id will be the name of the file written for each CAS.  

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/HtmlTableCasConsumer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/HtmlTableCasConsumer.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/HtmlTableCasConsumer.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/HtmlTableCasConsumer.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-  <implementationName>edu.mayo.bmi.uima.core.cc.HtmlTableCasConsumer</implementationName>
+  <implementationName>org.apache.ctakes.core.cc.HtmlTableCasConsumer</implementationName>
   <processingResourceMetaData>
     <name>HtmlTableCasConsumer</name>
     <description>Outputs an HTML table that visualizes the specified Annotation objects over the document text.</description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/JdbcCasConsumer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/JdbcCasConsumer.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/JdbcCasConsumer.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/JdbcCasConsumer.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-<implementationName>edu.mayo.bmi.uima.core.cc.jdbc.JdbcCasConsumer</implementationName>
+<implementationName>org.apache.ctakes.core.cc.jdbc.JdbcCasConsumer</implementationName>
 <processingResourceMetaData>
 <name>JdbcCasConsumer</name>
 <version>1.0</version>
@@ -64,13 +64,13 @@
 <externalResourceDependency>
 <key>DbConnection</key>
 <description></description>
-<interfaceName>edu.mayo.bmi.uima.core.resource.JdbcConnectionResource</interfaceName>
+<interfaceName>org.apache.ctakes.core.resource.JdbcConnectionResource</interfaceName>
 <optional>false</optional>
 </externalResourceDependency>
 <externalResourceDependency>
 <key>BindDescriptor</key>
 <description></description>
-<interfaceName>edu.mayo.bmi.uima.core.resource.FileResource</interfaceName>
+<interfaceName>org.apache.ctakes.core.resource.FileResource</interfaceName>
 <optional>false</optional>
 </externalResourceDependency>
 </externalResourceDependencies>
@@ -143,7 +143,7 @@
 </configurationParameterSettings>
 </resourceMetaData>
 </configurableDataResourceSpecifier>
-<implementationName>edu.mayo.bmi.uima.core.resource.JdbcConnectionResourceImpl</implementationName>
+<implementationName>org.apache.ctakes.core.resource.JdbcConnectionResourceImpl</implementationName>
 </externalResource>
 <externalResource>
 <name>BindDescriptorFile</name>
@@ -151,7 +151,7 @@
 <fileResourceSpecifier>
 <fileUrl>file:cc/jdbc/TestBinding.xml</fileUrl>
 </fileResourceSpecifier>
-<implementationName>edu.mayo.bmi.uima.core.resource.FileResourceImpl</implementationName>
+<implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
 </externalResource>
 </externalResources>
 <externalResourceBindings>

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/NormalizedFilesInDirectoryCasConsumer.example.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/NormalizedFilesInDirectoryCasConsumer.example.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/NormalizedFilesInDirectoryCasConsumer.example.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/NormalizedFilesInDirectoryCasConsumer.example.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-<implementationName>edu.mayo.bmi.uima.core.cc.NormalizedFilesInDirectoryCasConsumer</implementationName>
+<implementationName>org.apache.ctakes.core.cc.NormalizedFilesInDirectoryCasConsumer</implementationName>
 <processingResourceMetaData>
 <name>NormalizedFilesInDirectoryCasConsumer</name>
 <description>This is very similar to the FilesInDirectoryCasConsumer except that what is written to the files are space delimited word token annotations.  The text used from the word token annotations is the "CanonicalForm" attribute - so the lvg annotator should be run first.  See FilesInDirectoryCasConsumer.example.xml for a description of that cas consumer.</description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/TokenFreqCasConsumer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/TokenFreqCasConsumer.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/TokenFreqCasConsumer.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/TokenFreqCasConsumer.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-<implementationName>edu.mayo.bmi.uima.core.cc.TokenFreqCasConsumer</implementationName>
+<implementationName>org.apache.ctakes.core.cc.TokenFreqCasConsumer</implementationName>
 <processingResourceMetaData>
 <name>TokenFreqCasConsumer</name>
 <description> </description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/TokenOffsetsCasConsumer.example.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/TokenOffsetsCasConsumer.example.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/TokenOffsetsCasConsumer.example.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/TokenOffsetsCasConsumer.example.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-<implementationName>edu.mayo.bmi.uima.core.cc.TokenOffsetsCasConsumer</implementationName>
+<implementationName>org.apache.ctakes.core.cc.TokenOffsetsCasConsumer</implementationName>
 <processingResourceMetaData>
 <name>TokenOffsetsCasConsumer</name>
 <description>For each CAS a local file with the offsets of the BaseToken annotations is written to a directory specifed by a parameter.

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/XCasWriterCasConsumer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/XCasWriterCasConsumer.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/XCasWriterCasConsumer.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_consumer/XCasWriterCasConsumer.xml Mon Sep 24 22:04:51 2012
@@ -46,7 +46,7 @@
     </configurationParameterSettings>
     <typeSystemDescription>
       <imports>
-        <import location="../../../common-type-system/desc/common_type_system.xml"/>
+        <import location="../../../ctakes-type-system/desc/common_type_system.xml"/>
         <import name="org.apache.uima.examples.SourceDocumentInformation"/>
       </imports>
     </typeSystemDescription>

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_initializer/NseCasInitializer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_initializer/NseCasInitializer.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_initializer/NseCasInitializer.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_initializer/NseCasInitializer.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casInitializerDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-  <implementationName>edu.mayo.bmi.uima.core.ci.SegmentCasInitializer</implementationName>
+  <implementationName>org.apache.ctakes.core.ci.SegmentCasInitializer</implementationName>
   <processingResourceMetaData>
     <name>NseCasInitializer</name>
     <description>Takes a NSE GPP Model formatted text file and creates SegmentAnnotations over it.</description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/cas_initializer/XCasReaderCasInitializer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/cas_initializer/XCasReaderCasInitializer.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/cas_initializer/XCasReaderCasInitializer.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/cas_initializer/XCasReaderCasInitializer.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <casInitializerDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-<implementationName>edu.mayo.bmi.uima.core.ci.XCasReaderCasInitializer</implementationName>
+<implementationName>org.apache.ctakes.core.ci.XCasReaderCasInitializer</implementationName>
 <processingResourceMetaData>
 <name>XCas Reader CAS Initializer</name>
 <description>Loads an XCAS into a CAS object.</description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/collection_reader/FilesInDirectoryCollectionCyclicalReads.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/collection_reader/FilesInDirectoryCollectionCyclicalReads.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/collection_reader/FilesInDirectoryCollectionCyclicalReads.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/collection_reader/FilesInDirectoryCollectionCyclicalReads.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <collectionReaderDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-  <implementationName>edu.mayo.bmi.uima.core.cr.FilesInDirectoryCollectionCyclicalReads</implementationName>
+  <implementationName>org.apache.ctakes.core.cr.FilesInDirectoryCollectionCyclicalReads</implementationName>
   <processingResourceMetaData>
     <name>lines from file collection reader</name>
     <description>This collection reader facilitates reading "documents" from a single file.  Each line in the document will be considered an entity to be analyzed by the CPE.  That is each line will be treated as a "document" and will have its own CAS.</description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <collectionReaderDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-<implementationName>edu.mayo.bmi.uima.core.cr.FilesInDirectoryCollectionReader</implementationName>
+<implementationName>org.apache.ctakes.core.cr.FilesInDirectoryCollectionReader</implementationName>
 <processingResourceMetaData>
 <name>lines from file collection reader</name>
 <description>This collection reader facilitates reading documents from a directory.

Modified: incubator/ctakes/trunk/ctakes-core/desc/collection_reader/JdbcCollectionReader.example.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/collection_reader/JdbcCollectionReader.example.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/collection_reader/JdbcCollectionReader.example.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/collection_reader/JdbcCollectionReader.example.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <collectionReaderDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-  <implementationName>edu.mayo.bmi.uima.core.cr.JdbcCollectionReader</implementationName>
+  <implementationName>org.apache.ctakes.core.cr.JdbcCollectionReader</implementationName>
   <processingResourceMetaData>
     <name>JdbcCollectionReader</name>
     <description>Collection Reader that pulls documents to be processed from a database.</description>
@@ -119,7 +119,7 @@
     <externalResourceDependency>
       <key>DbConnection</key>
       <description/>
-      <interfaceName>edu.mayo.bmi.uima.core.resource.JdbcConnectionResource</interfaceName>
+      <interfaceName>org.apache.ctakes.core.resource.JdbcConnectionResource</interfaceName>
       <optional>false</optional>
     </externalResourceDependency>
   </externalResourceDependencies>
@@ -198,7 +198,7 @@
             </configurationParameterSettings>
           </resourceMetaData>
         </configurableDataResourceSpecifier>
-        <implementationName>edu.mayo.bmi.uima.core.resource.JdbcConnectionResourceImpl</implementationName>
+        <implementationName>org.apache.ctakes.core.resource.JdbcConnectionResourceImpl</implementationName>
       </externalResource>
     </externalResources>
     <externalResourceBindings>

Modified: incubator/ctakes/trunk/ctakes-core/desc/collection_reader/LinesFromFileCollectionReader.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/collection_reader/LinesFromFileCollectionReader.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/collection_reader/LinesFromFileCollectionReader.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/collection_reader/LinesFromFileCollectionReader.xml Mon Sep 24 22:04:51 2012
@@ -21,7 +21,7 @@
 -->
 <collectionReaderDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
-<implementationName>edu.mayo.bmi.uima.core.cr.LinesFromFileCollectionReader</implementationName>
+<implementationName>org.apache.ctakes.core.cr.LinesFromFileCollectionReader</implementationName>
 <processingResourceMetaData>
 <name>lines from file collection reader</name>
 <description>This collection reader facilitates reading "documents" from a single file.  Each line in the document will be considered an entity to be analyzed by the CPE.  That is each line will be treated as a "document" and will have its own CAS.</description>

Modified: incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/SimpleSegmentAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/SimpleSegmentAnnotator.xml?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/SimpleSegmentAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-core/desc/test/analysis_engine/SimpleSegmentAnnotator.xml Mon Sep 24 22:04:51 2012
@@ -22,7 +22,7 @@
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>
-  <annotatorImplementationName>edu.mayo.bmi.uima.core.ae.SimpleSegmentAnnotator</annotatorImplementationName>
+  <annotatorImplementationName>org.apache.ctakes.core.ae.SimpleSegmentAnnotator</annotatorImplementationName>
   <analysisEngineMetaData>
     <name>SimpleSegmentAnnotator</name>
     <description/>

Modified: incubator/ctakes/trunk/ctakes-core/resources/launch/SentenceDetector--train_a_new_model.launch
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/resources/launch/SentenceDetector--train_a_new_model.launch?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/resources/launch/SentenceDetector--train_a_new_model.launch (original)
+++ incubator/ctakes/trunk/ctakes-core/resources/launch/SentenceDetector--train_a_new_model.launch Mon Sep 24 22:04:51 2012
@@ -2,13 +2,13 @@
 <launchConfiguration type="org.eclipse.jdt.launching.localJavaApplication">
 <stringAttribute key="bad_container_name" value="\core\resources\launch\SentenceDetector - argument checking"/>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/core/src/edu/mayo/bmi/uima/core/ae/SentenceDetector.java"/>
+<listEntry value="/ctakes-core/src/main/java/org/apache/ctakes/ctakes-core/ae/SentenceDetector.java"/>
 </listAttribute>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
 <listEntry value="1"/>
 </listAttribute>
 <booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="edu.mayo.bmi.uima.core.ae.SentenceDetector"/>
+<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="org.apache.ctakes.core.ae.SentenceDetector"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="data/test/sample_sd_training_sentences.txt&#13;&#10;resources/sentdetect/sample_sd.mod&#13;&#10;100&#13;&#10;5"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="core"/>
 </launchConfiguration>

Modified: incubator/ctakes/trunk/ctakes-core/resources/launch/Test--HyphenTextModifierImpl.launch
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/resources/launch/Test--HyphenTextModifierImpl.launch?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/resources/launch/Test--HyphenTextModifierImpl.launch (original)
+++ incubator/ctakes/trunk/ctakes-core/resources/launch/Test--HyphenTextModifierImpl.launch Mon Sep 24 22:04:51 2012
@@ -1,13 +1,13 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <launchConfiguration type="org.eclipse.jdt.launching.localJavaApplication">
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/core/src/edu/mayo/bmi/uima/core/ci/HyphenTextModifierImpl.java"/>
+<listEntry value="/ctakes-core/src/main/java/org/apache/ctakes/ctakes-core/ci/HyphenTextModifierImpl.java"/>
 </listAttribute>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
 <listEntry value="1"/>
 </listAttribute>
 <booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="edu.mayo.bmi.uima.core.ci.HyphenTextModifierImpl"/>
-<stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="&quot;../core/resources/tokenizer/hyphenated.txt&quot;"/>
+<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="org.apache.ctakes.core.ci.HyphenTextModifierImpl"/>
+<stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="&quot;../ctakes-core/resources/tokenizer/hyphenated.txt&quot;"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="core"/>
 </launchConfiguration>

Modified: incubator/ctakes/trunk/ctakes-core/resources/launch/Test--HyphenTextModifierImpl_with_sample_hyphenated_file.launch
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/resources/launch/Test--HyphenTextModifierImpl_with_sample_hyphenated_file.launch?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/resources/launch/Test--HyphenTextModifierImpl_with_sample_hyphenated_file.launch (original)
+++ incubator/ctakes/trunk/ctakes-core/resources/launch/Test--HyphenTextModifierImpl_with_sample_hyphenated_file.launch Mon Sep 24 22:04:51 2012
@@ -1,13 +1,13 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <launchConfiguration type="org.eclipse.jdt.launching.localJavaApplication">
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/core/src/edu/mayo/bmi/uima/core/ci/HyphenTextModifierImpl.java"/>
+<listEntry value="/ctakes-core/src/main/java/org/apache/ctakes/ctakes-core/ci/HyphenTextModifierImpl.java"/>
 </listAttribute>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
 <listEntry value="1"/>
 </listAttribute>
 <booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="edu.mayo.bmi.uima.core.ci.HyphenTextModifierImpl"/>
-<stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="&quot;../core/resources/tokenizer/hyphenated_sample.txt&quot;"/>
+<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="org.apache.ctakes.core.ci.HyphenTextModifierImpl"/>
+<stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="&quot;../ctakes-core/resources/tokenizer/hyphenated_sample.txt&quot;"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="core"/>
 </launchConfiguration>

Modified: incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking.launch
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking.launch?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking.launch (original)
+++ incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking.launch Mon Sep 24 22:04:51 2012
@@ -2,13 +2,13 @@
 <launchConfiguration type="org.eclipse.jdt.launching.localJavaApplication">
 <stringAttribute key="bad_container_name" value="\core\resources\launch\SentenceDetector - argument checking"/>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/core/src/edu/mayo/bmi/uima/core/ae/SentenceDetector.java"/>
+<listEntry value="/ctakes-core/src/main/java/org/apache/ctakes/ctakes-core/ae/SentenceDetector.java"/>
 </listAttribute>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
 <listEntry value="1"/>
 </listAttribute>
 <booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="edu.mayo.bmi.uima.core.ae.SentenceDetector"/>
+<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="org.apache.ctakes.core.ae.SentenceDetector"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="test_handling_of_file_does_not_exist&#13;&#10;filename_for_your_model&#13;&#10;5&#13;&#10;one_hundred"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="core"/>
 </launchConfiguration>

Modified: incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_0.launch
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_0.launch?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_0.launch (original)
+++ incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_0.launch Mon Sep 24 22:04:51 2012
@@ -2,12 +2,12 @@
 <launchConfiguration type="org.eclipse.jdt.launching.localJavaApplication">
 <stringAttribute key="bad_container_name" value="\core\resources\launch\SentenceDetector - argument checking"/>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/core/src/edu/mayo/bmi/uima/core/ae/SentenceDetector.java"/>
+<listEntry value="/ctakes-core/src/main/java/org/apache/ctakes/ctakes-core/ae/SentenceDetector.java"/>
 </listAttribute>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
 <listEntry value="1"/>
 </listAttribute>
 <booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="edu.mayo.bmi.uima.core.ae.SentenceDetector"/>
+<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="org.apache.ctakes.core.ae.SentenceDetector"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="core"/>
 </launchConfiguration>

Modified: incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_1.launch
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_1.launch?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_1.launch (original)
+++ incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_1.launch Mon Sep 24 22:04:51 2012
@@ -2,13 +2,13 @@
 <launchConfiguration type="org.eclipse.jdt.launching.localJavaApplication">
 <stringAttribute key="bad_container_name" value="\core\resources\launch\SentenceDetector - argument checking"/>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/core/src/edu/mayo/bmi/uima/core/ae/SentenceDetector.java"/>
+<listEntry value="/ctakes-core/src/main/java/org/apache/ctakes/ctakes-core/ae/SentenceDetector.java"/>
 </listAttribute>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
 <listEntry value="1"/>
 </listAttribute>
 <booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="edu.mayo.bmi.uima.core.ae.SentenceDetector"/>
+<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="org.apache.ctakes.core.ae.SentenceDetector"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="training_data_file"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="core"/>
 </launchConfiguration>

Modified: incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_2a.launch
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_2a.launch?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_2a.launch (original)
+++ incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_2a.launch Mon Sep 24 22:04:51 2012
@@ -2,13 +2,13 @@
 <launchConfiguration type="org.eclipse.jdt.launching.localJavaApplication">
 <stringAttribute key="bad_container_name" value="\core\resources\launch\SentenceDetector - argument checking"/>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/core/src/edu/mayo/bmi/uima/core/ae/SentenceDetector.java"/>
+<listEntry value="/ctakes-core/src/main/java/org/apache/ctakes/ctakes-core/ae/SentenceDetector.java"/>
 </listAttribute>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
 <listEntry value="1"/>
 </listAttribute>
 <booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="edu.mayo.bmi.uima.core.ae.SentenceDetector"/>
+<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="org.apache.ctakes.core.ae.SentenceDetector"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="test_catches_if_file1_does_not_exist  &#13;&#10;filename_for_your_model"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="core"/>
 </launchConfiguration>

Modified: incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_2b.launch
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_2b.launch?rev=1389618&r1=1389617&r2=1389618&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_2b.launch (original)
+++ incubator/ctakes/trunk/ctakes-core/resources/launch/Test--SentenceDetector--argument_checking_test_2b.launch Mon Sep 24 22:04:51 2012
@@ -2,13 +2,13 @@
 <launchConfiguration type="org.eclipse.jdt.launching.localJavaApplication">
 <stringAttribute key="bad_container_name" value="\core\resources\launch\SentenceDetector - argument checking"/>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/core/src/edu/mayo/bmi/uima/core/ae/SentenceDetector.java"/>
+<listEntry value="/ctakes-core/src/main/java/org/apache/ctakes/ctakes-core/ae/SentenceDetector.java"/>
 </listAttribute>
 <listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
 <listEntry value="1"/>
 </listAttribute>
 <booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="edu.mayo.bmi.uima.core.ae.SentenceDetector"/>
+<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="org.apache.ctakes.core.ae.SentenceDetector"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="&quot;data/test/mother_goose/OneMistyMoistyMorning.txt&quot;&#13;&#10;test_handling_invalid_Windows_filename_?_"/>
 <stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="core"/>
 </launchConfiguration>



Mime
View raw message