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From chen...@apache.org
Subject svn commit: r1388092 [20/22] - in /incubator/ctakes/trunk: ./ ctakes-chunker/ ctakes-chunker/desc/ ctakes-chunker/scripts/groovy/data/chunk/ ctakes-chunker/scripts/java/data/chunk/ ctakes-chunker/scripts/java/data/chunk/genia/ ctakes-chunker/src/main/j...
Date Thu, 20 Sep 2012 16:07:33 GMT
Modified: incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/AnnotationStatistics.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/AnnotationStatistics.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/AnnotationStatistics.java (original)
+++ incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/AnnotationStatistics.java Thu Sep 20 16:07:04 2012
@@ -1,25 +1,20 @@
-/* 
- * Copyright (c) 2012, Regents of the University of Colorado 
- * All rights reserved.
- * 
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions are met:
- * 
- * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 
- * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 
- * Neither the name of the University of Colorado at Boulder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. 
- * 
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
- * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- * POSSIBILITY OF SUCH DAMAGE. 
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
  */
 package org.cleartk.eval;
 

Modified: incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/Evaluation_ImplBase.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/Evaluation_ImplBase.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/Evaluation_ImplBase.java (original)
+++ incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/Evaluation_ImplBase.java Thu Sep 20 16:07:04 2012
@@ -1,25 +1,20 @@
-/* 
- * Copyright (c) 2012, Regents of the University of Colorado 
- * All rights reserved.
- * 
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions are met:
- * 
- * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 
- * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 
- * Neither the name of the University of Colorado at Boulder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. 
- * 
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
- * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- * POSSIBILITY OF SUCH DAMAGE. 
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
  */
 package org.cleartk.eval;
 

Modified: incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/util/ConfusionMatrix.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/util/ConfusionMatrix.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/util/ConfusionMatrix.java (original)
+++ incubator/ctakes/trunk/ctakes-relation-extractor/src/main/java/org/cleartk/eval/util/ConfusionMatrix.java Thu Sep 20 16:07:04 2012
@@ -1,25 +1,20 @@
-/** 
- * Copyright (c) 2011, Regents of the University of Colorado 
- * All rights reserved.
- * 
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions are met:
- * 
- * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 
- * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 
- * Neither the name of the University of Colorado at Boulder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. 
- * 
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
- * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- * POSSIBILITY OF SUCH DAMAGE. 
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
  */
 package org.cleartk.eval.util;
 

Modified: incubator/ctakes/trunk/ctakes-relation-extractor/test/src/org/chboston/cnlp/ctakes/relationextractor/ae/NamedEntityFeaturesExtractorTest.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-relation-extractor/test/src/org/chboston/cnlp/ctakes/relationextractor/ae/NamedEntityFeaturesExtractorTest.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-relation-extractor/test/src/org/chboston/cnlp/ctakes/relationextractor/ae/NamedEntityFeaturesExtractorTest.java (original)
+++ incubator/ctakes/trunk/ctakes-relation-extractor/test/src/org/chboston/cnlp/ctakes/relationextractor/ae/NamedEntityFeaturesExtractorTest.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
 package org.chboston.cnlp.ctakes.relationextractor.ae;
 
 import static org.junit.Assert.assertTrue;

Modified: incubator/ctakes/trunk/ctakes-side-effect/.classpath
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/.classpath?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/.classpath (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/.classpath Thu Sep 20 16:07:04 2012
@@ -1,33 +1,13 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/UIMA"/>
-	<classpathentry kind="src" output="target/classes" path="target/generated-sources/jcasgen">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="src" output="target/classes" path="src/main/java"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
+	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/UIMA"/>
+	<classpathentry kind="src" output="target/classes" path="target/generated-sources/jcasgen">
+		<attributes>
+			<attribute name="optional" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="output" path="target/classes"/>
+</classpath>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/AdjP2LookupWindow.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/AdjP2LookupWindow.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/AdjP2LookupWindow.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/AdjP2LookupWindow.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/DictionaryLookupAnnotator_sideEffect.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/DictionaryLookupAnnotator_sideEffect.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/DictionaryLookupAnnotator_sideEffect.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/DictionaryLookupAnnotator_sideEffect.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/DictionaryLookupAnnotator_sideEffectUMLS.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/DictionaryLookupAnnotator_sideEffectUMLS.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/DictionaryLookupAnnotator_sideEffectUMLS.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/DictionaryLookupAnnotator_sideEffectUMLS.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/LookupWindowAnnotator_sideEffect.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/LookupWindowAnnotator_sideEffect.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/LookupWindowAnnotator_sideEffect.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/LookupWindowAnnotator_sideEffect.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/PSESentenceAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/PSESentenceAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/PSESentenceAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/PSESentenceAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SESentenceClassifierAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SESentenceClassifierAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SESentenceClassifierAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SESentenceClassifierAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SESentenceFeatureAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SESentenceFeatureAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SESentenceFeatureAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SESentenceFeatureAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/VG2LookupWindow.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/VG2LookupWindow.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/VG2LookupWindow.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/VG2LookupWindow.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/cas_consumer/SideEffectCasConsumer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/cas_consumer/SideEffectCasConsumer.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/cas_consumer/SideEffectCasConsumer.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/cas_consumer/SideEffectCasConsumer.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <implementationName>edu.mayo.bmi.uima.sideeffect.cc.SideEffectCasConsumer</implementationName>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/cas_consumer/SideEffectSentenceCasConsumer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/cas_consumer/SideEffectSentenceCasConsumer.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/cas_consumer/SideEffectSentenceCasConsumer.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/cas_consumer/SideEffectSentenceCasConsumer.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <implementationName>edu.mayo.bmi.uima.sideeffect.cc.SideEffectSentenceCasConsumer</implementationName>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectCPE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectCPE.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectCPE.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectCPE.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
     <collectionReader>
         <collectionIterator>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectSentenceCPE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectSentenceCPE.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectSentenceCPE.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectSentenceCPE.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
     <collectionReader>
         <collectionIterator>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectSentence_CDA_CPE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectSentence_CDA_CPE.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectSentence_CDA_CPE.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffectSentence_CDA_CPE.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
     <collectionReader>
         <collectionIterator>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffect_CDA_CPE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffect_CDA_CPE.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffect_CDA_CPE.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/SideEffect_CDA_CPE.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
     <collectionReader>
         <collectionIterator>

Modified: incubator/ctakes/trunk/ctakes-side-effect/desc/type_system/SideEffectTypeSystem.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/type_system/SideEffectTypeSystem.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/type_system/SideEffectTypeSystem.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/type_system/SideEffectTypeSystem.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <name>ContextTypeSystem</name>
   <description/>

Modified: incubator/ctakes/trunk/ctakes-side-effect/resources/sideeffect/lookup/LookupDesc_sideEffect.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/resources/sideeffect/lookup/LookupDesc_sideEffect.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/resources/sideeffect/lookup/LookupDesc_sideEffect.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/resources/sideeffect/lookup/LookupDesc_sideEffect.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <lookupSpecification>
 	<!--  Defines what Gazetteers will be used in terms of implementation specifics and metaField configuration. -->
 	<dictionaries>

Modified: incubator/ctakes/trunk/ctakes-side-effect/resources/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/resources/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/resources/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/resources/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <lookupSpecification>
 	<!--  Defines what Gazetteers will be used in terms of implementation specifics and metaField configuration. -->
 	<dictionaries>

Modified: incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/PSESentenceAnnotator.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/PSESentenceAnnotator.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/PSESentenceAnnotator.java (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/PSESentenceAnnotator.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
 package edu.mayo.bmi.uima.sideeffect.ae;
 
 import java.util.HashSet;

Modified: incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SESentenceClassifierAnnotator.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SESentenceClassifierAnnotator.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SESentenceClassifierAnnotator.java (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SESentenceClassifierAnnotator.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
 package edu.mayo.bmi.uima.sideeffect.ae;
 
 import java.util.HashMap;

Modified: incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SESentenceFeatureAnnotator.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SESentenceFeatureAnnotator.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SESentenceFeatureAnnotator.java (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SESentenceFeatureAnnotator.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
 package edu.mayo.bmi.uima.sideeffect.ae;
 
 import java.io.BufferedReader;

Modified: incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SideEffectAnnotator.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SideEffectAnnotator.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SideEffectAnnotator.java (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/ae/SideEffectAnnotator.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
 package edu.mayo.bmi.uima.sideeffect.ae;
 
 import java.io.BufferedReader;

Modified: incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/cc/SideEffectCasConsumer.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/cc/SideEffectCasConsumer.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/cc/SideEffectCasConsumer.java (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/cc/SideEffectCasConsumer.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
 package edu.mayo.bmi.uima.sideeffect.cc;
 
 import java.io.BufferedWriter;

Modified: incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/cc/SideEffectSentenceCasConsumer.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/cc/SideEffectSentenceCasConsumer.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/cc/SideEffectSentenceCasConsumer.java (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/cc/SideEffectSentenceCasConsumer.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
 package edu.mayo.bmi.uima.sideeffect.cc;
 
 import java.io.BufferedWriter;

Modified: incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/util/PatternMatch.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/util/PatternMatch.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/util/PatternMatch.java (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/util/PatternMatch.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
 package edu.mayo.bmi.uima.sideeffect.util;
 
 import java.util.List;

Modified: incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/util/SEUtil.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/util/SEUtil.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/util/SEUtil.java (original)
+++ incubator/ctakes/trunk/ctakes-side-effect/src/main/java/edu/mayo/bmi/uima/sideeffect/util/SEUtil.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
 package edu.mayo.bmi.uima.sideeffect.util;
 
 import java.util.ArrayList;

Modified: incubator/ctakes/trunk/ctakes-smoking-status/.classpath
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/.classpath?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/.classpath (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/.classpath Thu Sep 20 16:07:04 2012
@@ -1,33 +1,13 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/UIMA"/>
-	<classpathentry kind="src" output="target/classes" path="target/generated-sources/jcasgen">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="src" output="target/classes" path="src/main/java"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
+	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/UIMA"/>
+	<classpathentry kind="src" output="target/classes" path="target/generated-sources/jcasgen">
+		<attributes>
+			<attribute name="optional" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="output" path="target/classes"/>
+</classpath>

Modified: incubator/ctakes/trunk/ctakes-smoking-status/data/test/cda/testpatient_cn_1.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/data/test/cda/testpatient_cn_1.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/data/test/cda/testpatient_cn_1.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/data/test/cda/testpatient_cn_1.xml Thu Sep 20 16:07:04 2012
@@ -1,2 +1,22 @@
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <?xml version="1.0" encoding="UTF-8"?><!DOCTYPE levelone SYSTEM "NotesIIST_RTF.DTD" [<!ENTITY deg '&#x00B0;'><!ENTITY sup2 '&#x00B2;'><!ENTITY micro '&#x00B5;'>]><levelone><clinical_document_header><id EX="###DOC_ID###" RT="2.16.840.1.113883.3.2.1.1"/><set_id EX="###SET_ID###" RT="2.16.840.1.113883.3.2.1.2"/><version_nbr V="###V_NBR###"/><document_type_cd V="687" S="2.16.840.1.113883.3.2.1.3" DN="Nutrition Consult"/><origination_dttm V="20030822T131513"/><confidentiality_cd V="0" S="2.16.840.1.113883.3.2.1.4"/><patient_encounter><practice_setting_cd V="4284" S="2.16.840.1.113883.3.2.1.7" DN="Nutr Clinic"/><encounter_tmr V="20030822"/><service_location><id EX="TBD" RT="2.16.840.1.113883.3.2.1.8"/></service_location><facility><organization><organization.nm V="MCR"/></organization></facility></patient_encounter><legal_authenticator><legal_authenticator.type_cd V="SPV"/><participation_tmr V=""/><signature_cd V="S"/><person><id EX="99999999" RT="2.16.840.1.113883.3.2.1.9"/><perso
 n_name><nm><GIV V="Julie"/><MID V="A"/><FAM V="Tester"/><PFX V=""/><SFX V="RD"/></nm><person_name.type_cd V="S"/></person_name></person></legal_authenticator><originator><originator.type_cd V="AUT"/><participation_tmr V="20030822T131513"/><person><id EX="99999999" RT="2.16.840.1.113883.3.2.1.9"/><person_name><nm><GIV V="Julie"/><MID V="A."/><FAM V="Tester"/><PFX V=""/><SFX V="RD"/></nm><person_name.type_cd V="L"/></person_name><telecom V="5-5555" USE="PG"/></person></originator><originating_organization><originating_organization.type_cd V="CST"/><organization><id EX="TBD" RT="2.16.840.1.113883.3.2.1.10"/><organization.nm V="Originating Organization - Coding TBD"/></organization></originating_organization><transcriptionist><transcriptionist.type_cd V="ENT"/><participation_tmr V="20030822T131513"/><person><id EX="99999999" RT="2.16.840.1.113883.3.2.1.9"/><person_name><nm><GIV V="Julie"/><MID V="A."/><FAM V="Tester"/></nm><person_name.type_cd V="L"/></person_name></person></tra
 nscriptionist><provider><provider.type_cd V="CON"/><participation_tmr V="20030822T131513"/><person><id EX="99999999" RT="2.16.840.1.113883.3.2.1.9"/><person_name><nm><GIV V="Julie"/><MID V="A."/><FAM V="Tester"/><PFX V=""/><SFX V="RD"/></nm><person_name.type_cd V="L"/></person_name><telecom V="5-5555" USE="PG"/></person></provider><patient><patient.type_cd V="PATSBJ"/><person><id EX="3-303-925" RT="2.16.840.1.113883.3.2.1.1"/><person_name><nm><GIV V="Terri"/><MID V="A."/><FAM V="Testing"/><PFX V="Judge"/><SFX V="Jr.,D.D.S."/></nm><person_name.type_cd V="L"/></person_name><addr><LIT V="100 Quality Control Avenue"/><CTY V="Rochester"/><STA V="MN"/><ZIP V="55905"/><CNT V="US"/></addr></person><is_known_by><id EX="TBD" RT="2.16.840.1.113883.3.2.2.1"/><is_known_to><id EX="TBD" RT="2.16.840.1.113883.3.2.1.10"/></is_known_to></is_known_by><birth_dttm V="19341123"/><administrative_gender_cd V="F" S="2.16.840.1.113883.3.2.2.2"/></patient><status_cd V="TBD" S="2.16.840.1.113883.3.2.1.
 16"/><cn1_admin_data><cn1_status_cd V="Fnl" S="2.16.840.1.113883.3.2.3.1"/><cn1_service_cd V="MNT" S="2.16.840.1.113883.3.2.3.2"/><cn1_event_cd V="CON" S="2.16.840.1.113883.3.2.3.3"/><cn1_document_id EX="000000000" RT="2.16.840.1.113883.3.2.3.4"/><cn1_revision_nbr V="1"/><cn1_site_cd V="RCH" S="2.16.840.1.113883.3.2.3.10"/></cn1_admin_data><document_title V="Document Service Name - Coding TBD" S="2.16.840.1.113883.3.2.1.17"/></clinical_document_header><body><section><caption><caption_cd V="20100" DN="Revision History" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Revision History</caption></section><section><caption><caption_cd V="20112" DN="I/R/P" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Impression / Report / Plan</caption><table><caption><caption_cd V="20003" DN="I/R/P" S="2.16.840.1.113883.3.1.21" SV="1.0"/></caption><tr><th>Problem</th><th>Plan</th></tr></table></section><section><caption><caption_cd V="20113" DN="Diagnoses" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Diagnosis</capti
 on><table><caption><caption_cd V="20003" DN="Diagnoses" S="2.16.840.1.113883.3.1.21" SV="1.0"/></caption><tr><th>Problem</th><th>Diagnosis</th></tr></table></section><section><caption><caption_cd V="20101" DN="Ref" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Referral Source</caption><paragraph><content>Dr. Nutritious suggested that the patient discontinue smoking.  He has used tobacco for most of his adult life.</content></paragraph></section><section><caption><caption_cd V="20102" DN="CC" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Chief Complaint/Reason for Visit</caption><paragraph><content>Medical Nutrition Therapy for Hyperlipidemia. Aspirin 200-mg once-a-day. Ibuprofen increased from 200 mg to 300 mg p.o. twice a day. Aspirin 80 mg.
 acetaminophen discontinued.</content></paragraph></section><section><caption><caption_cd V="20103" DN="HPI" S="2.16.840.1.113883.3.1.21" SV="1.0"/>History of Present Illness</caption><table><caption><caption_cd V="20003" DN="HPI" S="2.16.840.1.113883.3.1.21" SV="1.0"/></caption><tr><th>Problem</th><th>History</th></tr><tr><td/><td><paragraph><content>Referral from: Julie Tester, RD, LD, CNSD</content></paragraph></td></tr><tr><td/><td><paragraph><content>Phone contact: (555) 555-1212</content></paragraph></td></tr><tr><td/><td><paragraph><content>Height: 144 cm   Current Weight: 45 kg   Date of current weight: 02-29-2001   Admit Weight:  53 kg   BMI: 18 kg/m2</content></paragraph></td></tr><tr><td/><td><paragraph><content>Diet: General</content></paragraph></td></tr><tr><td/><td><paragraph><content>Daily Calorie needs (kcals): 1500 calories, assessed as HB + 20% for activity.</content></paragraph></td></tr><tr><td/><td><paragraph><content>Daily Protein needs: 40 grams,  asse
 ssed as 1.0 g/kg.</content></paragraph></td></tr><tr><td/><td><paragraph><content>Pt has been on a 3 day calorie count and has had an average intake of 1100 calories.  She was instructed to drink 2-3 cans of liquid supplement to help promote weight gain.  She agrees with the plan and has my number for further assessment. May want a Resting Metabolic Rate as well. She takes an aspirin a day for knee pain.</content></paragraph></td></tr></table><table><caption><caption_cd V="20004" DN="MC985" S="2.16.840.1.113883.3.1.21" SV="1.0"/></caption><tr><th><caption_cd V="30001" DN="PFH Date" S="2.16.840.1.113883.3.1.22" SV="1.0"/>PFH Date</th><th><caption_cd V="30002" DN="CVI Page#" S="2.16.840.1.113883.3.1.22" SV="1.0"/>CVI Page#</th><th><caption_cd V="30003" DN="CVI Date" S="2.16.840.1.113883.3.1.22" SV="1.0"/>CVI Date</th></tr><tr><td></td><td></td><td></td></tr></table></section><section><caption><caption_cd V="20107" DN="Med/Surg Hx" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Past Me
 dical/Surgical History</caption></section><section><caption><caption_cd V="20105" DN="Allerg" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Allergies</caption></section><section><caption><caption_cd V="20108" DN="Soc Hist" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Social History</caption></section><section><caption><caption_cd V="20109" DN="Fam Hist" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Family History</caption></section><section><caption><caption_cd V="20104" DN="Meds" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Current Medications</caption></section><section><caption><caption_cd V="20106" DN="Sys Rev" S="2.16.840.1.113883.3.1.21" SV="1.0"/>System Review</caption></section><section><caption><caption_cd V="20115" DN="Spec Instr" S=".16.840.1.113883.3.1.21" SV="1.0"/>Special Instructions</caption></section><section><caption><caption_cd V="20114" DN="Administrative" S="2.16.840.1.113883.3.1.21" SV="1.0"/>Administrative</caption><table><caption><caption_cd V="20005" DN="Billing" S="2.16.840.
 1.113883.3.1.21" SV="1.0"/></caption><tr><th>Billing</th><th>Value</th></tr><tr><th><caption_cd V="30004" DN="Margin Code" S="2.16.840.1.113883.3.1.22" SV="1.0"/>Margin Code</th><td></td></tr><tr><th><caption_cd V="30005" DN="Total Time" S="2.16.840.1.113883.3.1.22" SV="1.0"/>Total Time</th><td></td></tr><tr><th><caption_cd V="30006" DN="Counseling Time" S="2.16.840.1.113883.3.1.22" SV="1.0"/>Counseling Time</th><td></td></tr></table></section></body></levelone>

Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ArtificialSentenceAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ArtificialSentenceAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ArtificialSentenceAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ArtificialSentenceAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>true</primitive>

Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE_CDA.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE_CDA.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE_CDA.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE_CDA.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
   <primitive>false</primitive>

Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/KuRuleBasedClassifierAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/KuRuleBasedClassifierAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/KuRuleBasedClassifierAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/KuRuleBasedClassifierAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Licensed to the Apache Software Foundation (ASF) under one
+    or more contributor license agreements.  See the NOTICE file
+    distributed with this work for additional information
+    regarding copyright ownership.  The ASF licenses this file
+    to you under the Apache License, Version 2.0 (the
+    "License"); you may not use this file except in compliance
+    with the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+    Unless required by applicable law or agreed to in writing,
+    software distributed under the License is distributed on an
+    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+    KIND, either express or implied.  See the License for the
+    specific language governing permissions and limitations
+    under the License.
+
+-->
 <taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
 <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
 <primitive>true</primitive>



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