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From "Tommaso Teofili (JIRA)" <j...@apache.org>
Subject [jira] [Comment Edited] (CLEREZZA-724) Remove internally used "org.apache.xerces.util" from bundle import-package/export-package
Date Fri, 15 Feb 2013 13:03:13 GMT

    [ https://issues.apache.org/jira/browse/CLEREZZA-724?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13579146#comment-13579146
] 

Tommaso Teofili edited comment on CLEREZZA-724 at 2/15/13 1:01 PM:
-------------------------------------------------------------------

If I apply the patch I get a failure in SCB Jena TDB Storage Provider module on test org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest
with the following:


Test set: org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest
-------------------------------------------------------------------------------
Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 1.32 sec <<< FAILURE!
org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest  Time elapsed:
434.91 sec  <<< ERROR!
java.lang.OutOfMemoryError: Java heap space
	at java.util.HashMap.<init>(HashMap.java:187)
	at java.util.LinkedHashMap.<init>(LinkedHashMap.java:213)
	at org.openjena.atlas.lib.cache.CacheImpl.<init>(CacheImpl.java:33)
	at org.openjena.atlas.lib.cache.CacheLRU.<init>(CacheLRU.java:25)
	at org.openjena.atlas.lib.CacheFactory.createCache(CacheFactory.java:31)
	at org.openjena.atlas.lib.CacheFactory.createCache(CacheFactory.java:21)
	at com.hp.hpl.jena.tdb.nodetable.NodeTableCache.<init>(NodeTableCache.java:47)
	at com.hp.hpl.jena.tdb.nodetable.NodeTableCache.create(NodeTableCache.java:40)
	at com.hp.hpl.jena.tdb.sys.SetupTDB.makeNodeTable(SetupTDB.java:561)
	at com.hp.hpl.jena.tdb.sys.SetupTDB.buildDataset(SetupTDB.java:245)
	at com.hp.hpl.jena.tdb.sys.DatasetGraphSetup.createDatasetGraph(DatasetGraphSetup.java:21)
	at com.hp.hpl.jena.tdb.sys.CachingTDBMaker.createDatasetGraph(CachingTDBMaker.java:39)
	at com.hp.hpl.jena.tdb.sys.TDBMaker._createDatasetGraph(TDBMaker.java:78)
	at com.hp.hpl.jena.tdb.TDBFactory.createDatasetGraph(TDBFactory.java:126)
	at com.hp.hpl.jena.tdb.TDBFactory.createDataset(TDBFactory.java:83)
	at com.hp.hpl.jena.tdb.TDBFactory.createDataset(TDBFactory.java:79)
	at org.apache.clerezza.rdf.jena.tdb.storage.SingleTdbDatasetTcProvider.activate(SingleTdbDatasetTcProvider.java:417)
	at org.apache.clerezza.rdf.jena.tdb.storage.SingleTdbDatasetTcProvider.<init>(SingleTdbDatasetTcProvider.java:322)
	at org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest.setup(MultiThreadedSingleTdbDatasetTest.java:114)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:27)
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:31)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:236)
	at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:62)
	at org.apache.maven.surefire.suite.AbstractDirectoryTestSuite.executeTestSet(AbstractDirectoryTestSuite.java:140)
	at org.apache.maven.surefire.suite.AbstractDirectoryTestSuite.execute(AbstractDirectoryTestSuite.java:127)

org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest  Time elapsed:
434.911 sec  <<< ERROR!
java.lang.NullPointerException
	at org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest.cleanUpDirectory(MultiThreadedSingleTdbDatasetTest.java:144)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:37)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:236)
	at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:62)
	at org.apache.maven.surefire.suite.AbstractDirectoryTestSuite.executeTestSet(AbstractDirectoryTestSuite.java:140)
	at org.apache.maven.surefire.suite.AbstractDirectoryTestSuite.execute(AbstractDirectoryTestSuite.java:127)
	at org.apache.maven.surefire.Surefire.run(Surefire.java:177)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.apache.maven.surefire.booter.SurefireBooter.runSuitesInProcess(SurefireBooter.java:345)
	at org.apache.maven.surefire.booter.SurefireBooter.main(SurefireBooter.java:1009)

                
      was (Author: teofili):
    If I apply the patch I get a failure in _SCB Jena TDB Storage Provider_ module on test
_org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest_ with the following:


Test set: org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest
-------------------------------------------------------------------------------
Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 1.32 sec <<< FAILURE!
org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest  Time elapsed:
434.91 sec  <<< ERROR!
java.lang.OutOfMemoryError: Java heap space
	at java.util.HashMap.<init>(HashMap.java:187)
	at java.util.LinkedHashMap.<init>(LinkedHashMap.java:213)
	at org.openjena.atlas.lib.cache.CacheImpl.<init>(CacheImpl.java:33)
	at org.openjena.atlas.lib.cache.CacheLRU.<init>(CacheLRU.java:25)
	at org.openjena.atlas.lib.CacheFactory.createCache(CacheFactory.java:31)
	at org.openjena.atlas.lib.CacheFactory.createCache(CacheFactory.java:21)
	at com.hp.hpl.jena.tdb.nodetable.NodeTableCache.<init>(NodeTableCache.java:47)
	at com.hp.hpl.jena.tdb.nodetable.NodeTableCache.create(NodeTableCache.java:40)
	at com.hp.hpl.jena.tdb.sys.SetupTDB.makeNodeTable(SetupTDB.java:561)
	at com.hp.hpl.jena.tdb.sys.SetupTDB.buildDataset(SetupTDB.java:245)
	at com.hp.hpl.jena.tdb.sys.DatasetGraphSetup.createDatasetGraph(DatasetGraphSetup.java:21)
	at com.hp.hpl.jena.tdb.sys.CachingTDBMaker.createDatasetGraph(CachingTDBMaker.java:39)
	at com.hp.hpl.jena.tdb.sys.TDBMaker._createDatasetGraph(TDBMaker.java:78)
	at com.hp.hpl.jena.tdb.TDBFactory.createDatasetGraph(TDBFactory.java:126)
	at com.hp.hpl.jena.tdb.TDBFactory.createDataset(TDBFactory.java:83)
	at com.hp.hpl.jena.tdb.TDBFactory.createDataset(TDBFactory.java:79)
	at org.apache.clerezza.rdf.jena.tdb.storage.SingleTdbDatasetTcProvider.activate(SingleTdbDatasetTcProvider.java:417)
	at org.apache.clerezza.rdf.jena.tdb.storage.SingleTdbDatasetTcProvider.<init>(SingleTdbDatasetTcProvider.java:322)
	at org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest.setup(MultiThreadedSingleTdbDatasetTest.java:114)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:27)
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:31)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:236)
	at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:62)
	at org.apache.maven.surefire.suite.AbstractDirectoryTestSuite.executeTestSet(AbstractDirectoryTestSuite.java:140)
	at org.apache.maven.surefire.suite.AbstractDirectoryTestSuite.execute(AbstractDirectoryTestSuite.java:127)

org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest  Time elapsed:
434.911 sec  <<< ERROR!
java.lang.NullPointerException
	at org.apache.clerezza.rdf.jena.tdb.storage.MultiThreadedSingleTdbDatasetTest.cleanUpDirectory(MultiThreadedSingleTdbDatasetTest.java:144)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:37)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:236)
	at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:62)
	at org.apache.maven.surefire.suite.AbstractDirectoryTestSuite.executeTestSet(AbstractDirectoryTestSuite.java:140)
	at org.apache.maven.surefire.suite.AbstractDirectoryTestSuite.execute(AbstractDirectoryTestSuite.java:127)
	at org.apache.maven.surefire.Surefire.run(Surefire.java:177)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.apache.maven.surefire.booter.SurefireBooter.runSuitesInProcess(SurefireBooter.java:345)
	at org.apache.maven.surefire.booter.SurefireBooter.main(SurefireBooter.java:1009)

                  
> Remove internally used "org.apache.xerces.util" from bundle import-package/export-package
> -----------------------------------------------------------------------------------------
>
>                 Key: CLEREZZA-724
>                 URL: https://issues.apache.org/jira/browse/CLEREZZA-724
>             Project: Clerezza
>          Issue Type: Bug
>          Components: rdf.parse
>    Affects Versions: 0.2-incubating
>            Reporter: Minto van der Sluis
>         Attachments: Issue-724.patch
>
>
> I am experiencing LinkageError when using Clerezza in combination with CXF.
> Caused by: java.lang.LinkageError: loader constraint violation: when
> resolving method
> "org.apache.xerces.util.ParserConfigurationSettings.<init>(Lorg/apache/xerces/xni/parser/XMLComponentManager;)V"
> the class loader (instance of
> org/apache/felix/framework/BundleWiringImpl$BundleClassLoaderJava5) of
> the current class, org/apache/xerces/parsers/BasicParserConfiguration,
> and the class loader (instance of
> org/apache/felix/framework/BundleWiringImpl$BundleClassLoaderJava5) for
> resolved class, org/apache/xerces/util/ParserConfigurationSettings, have
> different Class objects for the type
> gs.<init>(Lorg/apache/xerces/xni/parser/XMLComponentManager;)V used in
> the signature
>     at org.apache.xerces.parsers.BasicParserConfiguration.<init>(Unknown
> Source)
>     at org.apache.xerces.parsers.DTDConfiguration.<init>(Unknown Source)
>     at
> org.apache.xerces.parsers.StandardParserConfiguration.<init>(Unknown Source)
>     at
> org.apache.xerces.parsers.StandardParserConfiguration.<init>(Unknown Source)
>     at
> com.hp.hpl.jena.rdf.arp.impl.RDFXMLParser.create(RDFXMLParser.java:117)
>     at com.hp.hpl.jena.rdf.arp.JenaReader.<init>(JenaReader.java:62)
>     at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native
> Method)[:1.7.0_02]
>     at
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)[:1.7.0_02]
>     at
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)[:1.7.0_02]
>     at
> java.lang.reflect.Constructor.newInstance(Constructor.java:525)[:1.7.0_02]
>     at java.lang.Class.newInstance0(Class.java:372)[:1.7.0_02]
>     at java.lang.Class.newInstance(Class.java:325)[:1.7.0_02]
>     at
> com.hp.hpl.jena.rdf.model.impl.RDFReaderFImpl.getReader(RDFReaderFImpl.java:113)
>     at com.hp.hpl.jena.rdf.model.impl.ModelCom.read(ModelCom.java:226)
>     at
> org.apache.clerezza.rdf.jena.parser.JenaParserProvider.parse(JenaParserProvider.java:68)
>     ...
> Removing "org.apache.xerces.util" from the bundle import-package and export-package resuls
in expected operation. Since the Xerces library is embedded inside the bundle it needs not
to be exported.
> See also the mailing list:
> http://mail-archives.apache.org/mod_mbox/incubator-clerezza-dev/201212.mbox/%3C50C0B4BB.3030307%40xup.nl%3E

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