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From Reto Bachmann-Gmür ...@farewellutopia.com>
Subject Re: Enable UIMA results mapping to Annotation Ontology (AO) RDF format
Date Sun, 28 Aug 2011 15:25:53 GMT
Hi Tommaso

An explicit vote might raise awareness for the patch, but silent consensus
would work as well.

Cheers,
Reto
On Aug 28, 2011 2:04 PM, "Tommaso Teofili" <tommaso.teofili@gmail.com>
wrote:
> Should I call a vote for the acceptance of this contribution?
> Cheers,
> Tommaso
>
> 2011/8/26 Tommaso Teofili <tommaso.teofili@gmail.com>
>
>>
>>
>> 2011/8/25 Paolo Ciccarese <paolo.ciccarese@gmail.com>
>>
>>> A few months ago or so I wrote to the Clerezza mailing list explaining
one
>>> of the needs of the biomedical community http://tinyurl.com/42rp3ma .
>>> Since
>>> then I've been working with Tommaso Teofili on the issue. Tommaso
>>> introduced
>>> new Clerezza-UIMA basic types for dealing with entities identified by
>>> URIs.
>>> This is a simple convention that will empower text miners interested in
>>> Semantic web and Linked Open Data. Also, an extension of the UIMA
>>> ClerezzaCASConsumer has been introduced to accommodate multiple mapping
>>> strategies - the previously available strategy has been defined as the
>>> 'default' one.
>>>
>>> I am now ready to contribute the code for mapping the UIMA results to
the
>>> Annotation Ontology (AO) RDF format - http://tinyurl.com/23p5dcc . The
>>> idea
>>> is to provide a common and stable way for the text mining algorithm to
>>> expose their results in a way that can be integrated with other efforts
in
>>> our field. This can be an important step for eliminating the
fragmentation
>>> in the bio-medical community where most of the text mining and entity
>>> recognition services I have to integrate has a different communication
>>> format.
>>>
>>
>> Paolo, this sounds very interesting in my opinion as it highlights also
how
>> useful Clerezza can be as a platform for linking (and enhancing) open
data
>> sources, I see you already opened a Jira [1], I'll review the attached
code
>> which, at a first glance, seems good.
>>
>>
>>>
>>> Next step would be to define a standard web service for triggering UIMA
>>> analysis and properly exposing the results.
>>>
>>> Best,
>>> Paolo Ciccarese
>>>
>>
>> Thanks and regards,
>> Tommaso
>>
>> [1] : https://issues.apache.org/jira/browse/CLEREZZA-628
>>

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