incubator-clerezza-dev mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From Reto Bachmann-Gmuer <reto.bachm...@trialox.org>
Subject Re: leak but where after parsing rdf files?
Date Thu, 13 Jan 2011 07:24:48 GMT
Hi Hasan

great thing to have an alternative parsing provider. I've been takling to
Andy Seaborne about the leak. He's aware of an issue when using the a
jena-riot parser he thinks it might be caused by a dependency of it.
Investigating further and doing profiling is high on my TODO-List.

Cheers,
reto

On Thu, Jan 13, 2011 at 12:08 AM, Hasan Hasan <hasan@trialox.org> wrote:

> Hi all,
>
> We experienced out of memory error after parsing rdf files. Assuming (or
> rather guessing?) leak in the jena parsing provider, I implemented a
> sesame-based parsing provider.
> However, using sesame-based parsing provider, I also get out of memory
> error. I carried out some experiments with jena-based as well as
> sesame-based parsing providers.
> The results are shown below. There is a memory leak but where? Maybe during
> storing the triples into the mgraph? I'll check this tomorrow... too tired
> now to continue...
>
> regards
> hasan
>
> Test setup:
> - The serialized graph contains 148163 triples
> - The serialized graph is an n-triples file (each line is a triple) but
> parsed with a turtle parser
> - The serialized graph is parsed several times and in each time the result
> is always stored to the same mgraph replacing old contents
>
> A. With Jena-based Parser
>
> A1. Options used: -Xmx256m -XX:MaxPermSize=128M
>
> Parsing the first time results in:
>
> INFO Thread-26 org.apache.clerezza.platform.BootMonitor - The Apache
> Clerezza Platform is now operational.
> DEBUG qtp11927727-23 - /graph org.eclipse.jetty.util.log - REQUEST /graph
> on
> org.eclipse.jetty.server.nio.SelectChannelConnector$2@3de8fe
> DEBUG qtp11927727-23 - /graph org.eclipse.jetty.util.log -
> sessionManager=org.eclipse.jetty.server.session.HashSessionManager@891d76
> DEBUG qtp11927727-23 - /graph org.eclipse.jetty.util.log - session=null
> DEBUG qtp11927727-23 - /graph org.eclipse.jetty.util.log -
> servlet=org.eclipse.equinox.http.servlet.HttpServiceServlet-33258683
> DEBUG qtp11927727-23 - /graph org.eclipse.jetty.util.log - servlet holder=
> DEBUG qtp11927727-23 - /graph org.eclipse.jetty.util.log - chain=
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.auth.AuthenticationCheckerImpl - user
> admin successfully authenticated
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Get permissions for
> user admin
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (java.security.AllPermission "" "")
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (java.util.PropertyPermission "*" "read")
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.osgi.framework.AdminPermission "*" "resource")
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.osgi.framework.AdminPermission "*" "metadata")
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/content.graph" "read")
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/documentation.graph" "read")
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/config.graph" "read")
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/live.a.graph" "read")
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/live.b.graph" "read")
> DEBUG qtp11927727-23 - /graph org.apache.clerezza.triaxrs.WebRequestImpl -
> Accept-Header: [text/html, application/xhtml+xml, application/xml;q=0.9,
> */*;q=0.8]
> DEBUG qtp11927727-23 - /graph
> org.apache.clerezza.triaxrs.InjectionUtilities
> - Parameter org.apache.clerezza.jaxrs.utils.form.MultiPartBody has
> annotations: 0
> WARN qtp11927727-23 - /graph org.eclipse.jetty.util.log - Error for /graph
> java.lang.OutOfMemoryError: Java heap space
> at java.util.Arrays.copyOf(Arrays.java:2786)
> at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:71)
> at
>
> org.apache.clerezza.jaxrs.utils.form.DelimiterInputStream.readTill(DelimiterInputStream.java:68)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.readFields(MultiPartBodyImpl.java:358)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.<init>(MultiPartBodyImpl.java:222)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.<init>(MultiPartBodyImpl.java:239)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartFormMessageBodyReader.readFrom(MultiPartFormMessageBodyReader.java:60)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartFormMessageBodyReader.readFrom(MultiPartFormMessageBodyReader.java:43)
> at
>
> org.apache.clerezza.triaxrs.WebRequestImpl.getBodyObject(WebRequestImpl.java:194)
> at
>
> org.apache.clerezza.triaxrs.InjectionUtilities.createParametersForRequest(InjectionUtilities.java:201)
> at
>
> org.apache.clerezza.triaxrs.RootResourceExecutorImpl.handleWithMethod(RootResourceExecutorImpl.java:461)
> at
>
> org.apache.clerezza.triaxrs.RootResourceExecutorImpl.execute(RootResourceExecutorImpl.java:119)
> at org.apache.clerezza.triaxrs.JaxRsHandler.handle(JaxRsHandler.java:503)
> at
>
> org.wymiwyg.wrhapi.util.pathmappings.PathMappingHandler$RegisteredHandler.handle(PathMappingHandler.java:127)
> at
>
> org.wymiwyg.wrhapi.util.pathmappings.PathMappingHandler.handle(PathMappingHandler.java:102)
> at
>
> org.apache.clerezza.platform.security.auth.AuthenticatingFilter$1.run(AuthenticatingFilter.java:94)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAsPrivileged(Subject.java:517)
> at
>
> org.apache.clerezza.platform.security.auth.AuthenticatingFilter.handle(AuthenticatingFilter.java:90)
> at org.wymiwyg.wrhapi.filter.impl.FilterRunner.handle(FilterRunner.java:56)
> at
>
> org.apache.clerezza.platform.xhtml2html.Xhtml2HtmlFilter.handle(Xhtml2HtmlFilter.java:73)
> at org.wymiwyg.wrhapi.filter.impl.FilterRunner.handle(FilterRunner.java:56)
> at
>
> org.wymiwyg.wrhapi.osgi.OsgiWebServerFactory$1.service(OsgiWebServerFactory.java:78)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:847)
> at
>
> org.eclipse.equinox.http.servlet.internal.ServletRegistration.handleRequest(ServletRegistration.java:90)
> at
>
> org.eclipse.equinox.http.servlet.internal.ProxyServlet.processAlias(ProxyServlet.java:109)
> at
>
> org.eclipse.equinox.http.servlet.internal.ProxyServlet.service(ProxyServlet.java:75)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:847)
> at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:532)
> at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:453)
> at
>
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:227)
> at
>
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:965)
> DEBUG qtp11927727-23 - /graph org.eclipse.jetty.util.log - [POST
> /graph]@5006061 org.eclipse.jetty.server.Request@4c62ed
> DEBUG qtp11927727-23 - /graph org.eclipse.jetty.util.log - RESPONSE /graph
>  500
> DEBUG qtp11927727-17 - Acceptor0
> SelectChannelConnector@0.0.0.0:8080org.eclipse.jetty.util.log -
> org.eclipse.jetty.io.nio.SelectorManager$SelectSet@2f63c JVM BUG(s) -
> cancelled keys 1 times
> DEBUG qtp11927727-18 org.eclipse.jetty.util.log - EOF
>
>
> A2. Options used: -Xmx320m -XX:MaxPermSize=128M
>
> Parsing the second time results in:
>
> DEBUG qtp29719186-20 - /graph org.eclipse.jetty.util.log - REQUEST /graph
> on
> org.eclipse.jetty.server.nio.SelectChannelConnector$2@e64ba2
> DEBUG qtp29719186-20 - /graph org.eclipse.jetty.util.log -
> sessionManager=org.eclipse.jetty.server.session.HashSessionManager@1abdb8a
> DEBUG qtp29719186-20 - /graph org.eclipse.jetty.util.log - session=null
> DEBUG qtp29719186-20 - /graph org.eclipse.jetty.util.log -
> servlet=org.eclipse.equinox.http.servlet.HttpServiceServlet-24612108
> DEBUG qtp29719186-20 - /graph org.eclipse.jetty.util.log - servlet holder=
> DEBUG qtp29719186-20 - /graph org.eclipse.jetty.util.log - chain=
> DEBUG qtp29719186-20 - /graph
> org.apache.clerezza.platform.security.auth.AuthenticationCheckerImpl - user
> admin successfully authenticated
> DEBUG qtp29719186-20 - /graph org.apache.clerezza.triaxrs.WebRequestImpl -
> Accept-Header: [text/html, application/xhtml+xml, application/xml;q=0.9,
> */*;q=0.8]
> DEBUG qtp29719186-20 - /graph
> org.apache.clerezza.triaxrs.InjectionUtilities
> - Parameter org.apache.clerezza.jaxrs.utils.form.MultiPartBody has
> annotations: 0
> WARN qtp29719186-20 - /graph org.eclipse.jetty.util.log - Error for /graph
> java.lang.OutOfMemoryError: Java heap space
> at java.util.Arrays.copyOf(Arrays.java:2786)
> at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:71)
> at
>
> org.apache.clerezza.jaxrs.utils.form.DelimiterInputStream.readTill(DelimiterInputStream.java:68)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.readFields(MultiPartBodyImpl.java:358)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.<init>(MultiPartBodyImpl.java:222)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.<init>(MultiPartBodyImpl.java:239)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartFormMessageBodyReader.readFrom(MultiPartFormMessageBodyReader.java:60)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartFormMessageBodyReader.readFrom(MultiPartFormMessageBodyReader.java:43)
> at
>
> org.apache.clerezza.triaxrs.WebRequestImpl.getBodyObject(WebRequestImpl.java:194)
> at
>
> org.apache.clerezza.triaxrs.InjectionUtilities.createParametersForRequest(InjectionUtilities.java:201)
> at
>
> org.apache.clerezza.triaxrs.RootResourceExecutorImpl.handleWithMethod(RootResourceExecutorImpl.java:461)
> at
>
> org.apache.clerezza.triaxrs.RootResourceExecutorImpl.execute(RootResourceExecutorImpl.java:119)
> at org.apache.clerezza.triaxrs.JaxRsHandler.handle(JaxRsHandler.java:503)
> at
>
> org.wymiwyg.wrhapi.util.pathmappings.PathMappingHandler$RegisteredHandler.handle(PathMappingHandler.java:127)
> at
>
> org.wymiwyg.wrhapi.util.pathmappings.PathMappingHandler.handle(PathMappingHandler.java:102)
> at
>
> org.apache.clerezza.platform.security.auth.AuthenticatingFilter$1.run(AuthenticatingFilter.java:94)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAsPrivileged(Subject.java:517)
> at
>
> org.apache.clerezza.platform.security.auth.AuthenticatingFilter.handle(AuthenticatingFilter.java:90)
> at org.wymiwyg.wrhapi.filter.impl.FilterRunner.handle(FilterRunner.java:56)
> at
>
> org.apache.clerezza.platform.xhtml2html.Xhtml2HtmlFilter.handle(Xhtml2HtmlFilter.java:73)
> at org.wymiwyg.wrhapi.filter.impl.FilterRunner.handle(FilterRunner.java:56)
> at
>
> org.wymiwyg.wrhapi.osgi.OsgiWebServerFactory$1.service(OsgiWebServerFactory.java:78)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:847)
> at
>
> org.eclipse.equinox.http.servlet.internal.ServletRegistration.handleRequest(ServletRegistration.java:90)
> at
>
> org.eclipse.equinox.http.servlet.internal.ProxyServlet.processAlias(ProxyServlet.java:109)
> at
>
> org.eclipse.equinox.http.servlet.internal.ProxyServlet.service(ProxyServlet.java:75)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:847)
> at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:532)
> at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:453)
> at
>
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:227)
> at
>
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:965)
> DEBUG qtp29719186-20 - /graph org.eclipse.jetty.util.log - [POST
> /graph]@31032394 org.eclipse.jetty.server.Request@1d9844a
> DEBUG qtp29719186-20 - /graph org.eclipse.jetty.util.log - RESPONSE /graph
>  500
>
>
> A3. Options used: -Xmx380m -XX:MaxPermSize=128M
> Still no problem after parsing 5 times
>
>
> B. With Sesame-based Parser
>
> B1. Options used: -Xmx256m -XX:MaxPermSize=128M
>
> Parsing the first time results in:
>
> DEBUG qtp18102317-19 - /graph org.eclipse.jetty.util.log - REQUEST /graph
> on
> org.eclipse.jetty.server.nio.SelectChannelConnector$2@119e3ab
> DEBUG qtp18102317-19 - /graph org.eclipse.jetty.util.log -
> sessionManager=org.eclipse.jetty.server.session.HashSessionManager@116c054
> DEBUG qtp18102317-19 - /graph org.eclipse.jetty.util.log - session=null
> DEBUG qtp18102317-19 - /graph org.eclipse.jetty.util.log -
> servlet=org.eclipse.equinox.http.servlet.HttpServiceServlet-30926038
> DEBUG qtp18102317-19 - /graph org.eclipse.jetty.util.log - servlet holder=
> DEBUG qtp18102317-19 - /graph org.eclipse.jetty.util.log - chain=
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.auth.AuthenticationCheckerImpl - user
> admin successfully authenticated
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Get permissions for
> user admin
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (java.security.AllPermission "" "")
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (java.util.PropertyPermission "*" "read")
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.osgi.framework.AdminPermission "*" "resource")
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.osgi.framework.AdminPermission "*" "metadata")
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/content.graph" "read")
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/documentation.graph" "read")
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/config.graph" "read")
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/live.a.graph" "read")
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/live.b.graph" "read")
> DEBUG qtp18102317-19 - /graph org.apache.clerezza.triaxrs.WebRequestImpl -
> Accept-Header: [text/html, application/xhtml+xml, application/xml;q=0.9,
> */*;q=0.8]
> DEBUG qtp18102317-19 - /graph
> org.apache.clerezza.triaxrs.InjectionUtilities
> - Parameter org.apache.clerezza.jaxrs.utils.form.MultiPartBody has
> annotations: 0
> WARN qtp18102317-19 - /graph org.eclipse.jetty.util.log - Error for /graph
> java.lang.OutOfMemoryError: Java heap space
> at java.util.Arrays.copyOf(Arrays.java:2786)
> at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:71)
> at
>
> org.apache.clerezza.jaxrs.utils.form.DelimiterInputStream.readTill(DelimiterInputStream.java:68)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.readFields(MultiPartBodyImpl.java:358)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.<init>(MultiPartBodyImpl.java:222)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.<init>(MultiPartBodyImpl.java:239)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartFormMessageBodyReader.readFrom(MultiPartFormMessageBodyReader.java:60)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartFormMessageBodyReader.readFrom(MultiPartFormMessageBodyReader.java:43)
> at
>
> org.apache.clerezza.triaxrs.WebRequestImpl.getBodyObject(WebRequestImpl.java:194)
> at
>
> org.apache.clerezza.triaxrs.InjectionUtilities.createParametersForRequest(InjectionUtilities.java:201)
> at
>
> org.apache.clerezza.triaxrs.RootResourceExecutorImpl.handleWithMethod(RootResourceExecutorImpl.java:461)
> at
>
> org.apache.clerezza.triaxrs.RootResourceExecutorImpl.execute(RootResourceExecutorImpl.java:119)
> at org.apache.clerezza.triaxrs.JaxRsHandler.handle(JaxRsHandler.java:503)
> at
>
> org.wymiwyg.wrhapi.util.pathmappings.PathMappingHandler$RegisteredHandler.handle(PathMappingHandler.java:127)
> at
>
> org.wymiwyg.wrhapi.util.pathmappings.PathMappingHandler.handle(PathMappingHandler.java:102)
> at
>
> org.apache.clerezza.platform.security.auth.AuthenticatingFilter$1.run(AuthenticatingFilter.java:94)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAsPrivileged(Subject.java:517)
> at
>
> org.apache.clerezza.platform.security.auth.AuthenticatingFilter.handle(AuthenticatingFilter.java:90)
> at org.wymiwyg.wrhapi.filter.impl.FilterRunner.handle(FilterRunner.java:56)
> at
>
> org.apache.clerezza.platform.xhtml2html.Xhtml2HtmlFilter.handle(Xhtml2HtmlFilter.java:73)
> at org.wymiwyg.wrhapi.filter.impl.FilterRunner.handle(FilterRunner.java:56)
> at
>
> org.wymiwyg.wrhapi.osgi.OsgiWebServerFactory$1.service(OsgiWebServerFactory.java:78)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:847)
> at
>
> org.eclipse.equinox.http.servlet.internal.ServletRegistration.handleRequest(ServletRegistration.java:90)
> at
>
> org.eclipse.equinox.http.servlet.internal.ProxyServlet.processAlias(ProxyServlet.java:109)
> at
>
> org.eclipse.equinox.http.servlet.internal.ProxyServlet.service(ProxyServlet.java:75)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:847)
> at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:532)
> at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:453)
> at
>
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:227)
> at
>
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:965)
> DEBUG qtp18102317-19 - /graph org.eclipse.jetty.util.log - [POST
> /graph]@33413638 org.eclipse.jetty.server.Request@1fdda06
> DEBUG qtp18102317-19 - /graph org.eclipse.jetty.util.log - RESPONSE /graph
>  500
>
>
>
> B2. Options used: -Xmx320m -XX:MaxPermSize=128M
>
> Parsing the first time results in:
>
> INFO Thread-26 org.apache.clerezza.platform.BootMonitor - The Apache
> Clerezza Platform is now operational.
> DEBUG qtp18195096-19 - /graph org.eclipse.jetty.util.log - REQUEST /graph
> on
> org.eclipse.jetty.server.nio.SelectChannelConnector$2@1214c4e
> DEBUG qtp18195096-19 - /graph org.eclipse.jetty.util.log -
> sessionManager=org.eclipse.jetty.server.session.HashSessionManager@dc135d
> DEBUG qtp18195096-19 - /graph org.eclipse.jetty.util.log - session=null
> DEBUG qtp18195096-19 - /graph org.eclipse.jetty.util.log -
> servlet=org.eclipse.equinox.http.servlet.HttpServiceServlet-1848812
> DEBUG qtp18195096-19 - /graph org.eclipse.jetty.util.log - servlet holder=
> DEBUG qtp18195096-19 - /graph org.eclipse.jetty.util.log - chain=
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.auth.AuthenticationCheckerImpl - user
> admin successfully authenticated
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Get permissions for
> user admin
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (java.security.AllPermission "" "")
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (java.util.PropertyPermission "*" "read")
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.osgi.framework.AdminPermission "*" "resource")
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.osgi.framework.AdminPermission "*" "metadata")
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/content.graph" "read")
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/documentation.graph" "read")
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/config.graph" "read")
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/live.a.graph" "read")
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.platform.security.UserAwarePolicy - Add permission
> (org.apache.clerezza.rdf.core.access.security.TcPermission "
> http://tpf.localhost/live.b.graph" "read")
> DEBUG qtp18195096-19 - /graph org.apache.clerezza.triaxrs.WebRequestImpl -
> Accept-Header: [text/html, application/xhtml+xml, application/xml;q=0.9,
> */*;q=0.8]
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.triaxrs.InjectionUtilities
> - Parameter org.apache.clerezza.jaxrs.utils.form.MultiPartBody has
> annotations: 0
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.triaxrs.InjectionUtilities
> - Parameter javax.ws.rs.core.UriInfo has annotations: 1
> DEBUG qtp18195096-19 - /graph
> org.apache.clerezza.triaxrs.InjectionUtilities
> - Inject parameter 1 to org.apache.clerezza.triaxrs.util.UriInfoImpl@12bdf9
> WARN qtp18195096-19 - /graph org.apache.clerezza.triaxrs.JaxRsHandler -
> Exception (with no exception mapper)
> java.lang.OutOfMemoryError: GC overhead limit exceeded
> at java.util.LinkedHashMap.createEntry(LinkedHashMap.java:424)
> at java.util.LinkedHashMap.addEntry(LinkedHashMap.java:406)
> at java.util.HashMap.put(HashMap.java:385)
> at org.openjena.atlas.lib.cache.CacheLRU.put(CacheLRU.java:47)
> at
>
> com.hp.hpl.jena.tdb.nodetable.NodeTableCache.cacheUpdate(NodeTableCache.java:156)
> at
>
> com.hp.hpl.jena.tdb.nodetable.NodeTableCache._retrieveNodeByNodeId(NodeTableCache.java:87)
> at
>
> com.hp.hpl.jena.tdb.nodetable.NodeTableCache.getNodeForNodeId(NodeTableCache.java:57)
> at
>
> com.hp.hpl.jena.tdb.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:43)
> at
>
> com.hp.hpl.jena.tdb.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:55)
> at com.hp.hpl.jena.tdb.lib.TupleLib.triple(TupleLib.java:108)
> at com.hp.hpl.jena.tdb.lib.TupleLib.triple(TupleLib.java:103)
> at com.hp.hpl.jena.tdb.lib.TupleLib.access$000(TupleLib.java:32)
> at com.hp.hpl.jena.tdb.lib.TupleLib$3.convert(TupleLib.java:64)
> at com.hp.hpl.jena.tdb.lib.TupleLib$3.convert(TupleLib.java:60)
> at org.openjena.atlas.iterator.Iter$4.next(Iter.java:265)
> at
>
> com.hp.hpl.jena.tdb.store.GraphTDBBase$MapperIteratorTriples.next(GraphTDBBase.java:227)
> at
>
> com.hp.hpl.jena.tdb.store.GraphTDBBase$MapperIteratorTriples.next(GraphTDBBase.java:186)
> at
>
> org.apache.clerezza.rdf.jena.storage.JenaGraphAdaptor$1.next(JenaGraphAdaptor.java:108)
> at
>
> org.apache.clerezza.rdf.jena.storage.JenaGraphAdaptor$1.remove(JenaGraphAdaptor.java:120)
> at
>
> org.apache.clerezza.rdf.core.impl.AbstractTripleCollection$1.remove(AbstractTripleCollection.java:88)
> at java.util.AbstractCollection.clear(AbstractCollection.java:396)
> at
>
> org.apache.clerezza.rdf.core.impl.util.PrivilegedTripleCollectionWrapper$14.run(PrivilegedTripleCollectionWrapper.java:198)
> at java.security.AccessController.doPrivileged(Native Method)
> at
>
> org.apache.clerezza.rdf.core.impl.util.PrivilegedTripleCollectionWrapper.clear(PrivilegedTripleCollectionWrapper.java:194)
> at
>
> org.apache.clerezza.rdf.core.access.LockableMGraphWrapper.clear(LockableMGraphWrapper.java:218)
> at
> org.apache.clerezza.rdf.web.core.WebAccess.postTriples(WebAccess.java:183)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
>
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
> at
>
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> at java.lang.reflect.Method.invoke(Method.java:597)
> at
>
> org.apache.clerezza.triaxrs.RootResourceExecutorImpl.handleWithMethod(RootResourceExecutorImpl.java:469)
> at
>
> org.apache.clerezza.triaxrs.RootResourceExecutorImpl.execute(RootResourceExecutorImpl.java:119)
> WARN qtp18195096-19 - /graph org.wymiwyg.wrhapi.osgi.OsgiWebServerFactory -
> Exception handling requestorg.wymiwyg.wrhapi.HandlerException:
> java.lang.OutOfMemoryError: GC overhead limit exceeded
> DEBUG qtp18195096-19 - /graph org.eclipse.jetty.util.log - RESPONSE /graph
>  500
> DEBUG qtp18195096-23 org.eclipse.jetty.util.log - EOF
>
>
> B3. Options used: -Xmx380m -XX:MaxPermSize=128M
>
> Parsing the 3rd time results in
>
> DEBUG qtp7908994-20 - /graph org.eclipse.jetty.util.log - REQUEST /graph on
> org.eclipse.jetty.server.nio.SelectChannelConnector$2@1ff9440
> DEBUG qtp7908994-20 - /graph org.eclipse.jetty.util.log -
> sessionManager=org.eclipse.jetty.server.session.HashSessionManager@35b5e8
> DEBUG qtp7908994-20 - /graph org.eclipse.jetty.util.log - session=null
> DEBUG qtp7908994-20 - /graph org.eclipse.jetty.util.log -
> servlet=org.eclipse.equinox.http.servlet.HttpServiceServlet-14065888
> DEBUG qtp7908994-20 - /graph org.eclipse.jetty.util.log - servlet holder=
> DEBUG qtp7908994-20 - /graph org.eclipse.jetty.util.log - chain=
> DEBUG qtp7908994-20 - /graph
> org.apache.clerezza.platform.security.auth.AuthenticationCheckerImpl - user
> admin successfully authenticated
> DEBUG qtp7908994-20 - /graph org.apache.clerezza.triaxrs.WebRequestImpl -
> Accept-Header: [text/html, application/xhtml+xml, application/xml;q=0.9,
> */*;q=0.8]
> DEBUG qtp7908994-20 - /graph org.apache.clerezza.triaxrs.InjectionUtilities
> - Parameter org.apache.clerezza.jaxrs.utils.form.MultiPartBody has
> annotations: 0
> WARN qtp7908994-20 - /graph org.eclipse.jetty.util.log - Error for /graph
> java.lang.OutOfMemoryError: Java heap space
> at java.util.Arrays.copyOf(Arrays.java:2786)
> at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:71)
> at
>
> org.apache.clerezza.jaxrs.utils.form.DelimiterInputStream.readTill(DelimiterInputStream.java:68)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.readFields(MultiPartBodyImpl.java:358)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.<init>(MultiPartBodyImpl.java:222)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartBodyImpl.<init>(MultiPartBodyImpl.java:239)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartFormMessageBodyReader.readFrom(MultiPartFormMessageBodyReader.java:60)
> at
>
> org.apache.clerezza.jaxrs.utils.form.MultiPartFormMessageBodyReader.readFrom(MultiPartFormMessageBodyReader.java:43)
> at
>
> org.apache.clerezza.triaxrs.WebRequestImpl.getBodyObject(WebRequestImpl.java:194)
> at
>
> org.apache.clerezza.triaxrs.InjectionUtilities.createParametersForRequest(InjectionUtilities.java:201)
> at
>
> org.apache.clerezza.triaxrs.RootResourceExecutorImpl.handleWithMethod(RootResourceExecutorImpl.java:461)
> at
>
> org.apache.clerezza.triaxrs.RootResourceExecutorImpl.execute(RootResourceExecutorImpl.java:119)
> at org.apache.clerezza.triaxrs.JaxRsHandler.handle(JaxRsHandler.java:503)
> at
>
> org.wymiwyg.wrhapi.util.pathmappings.PathMappingHandler$RegisteredHandler.handle(PathMappingHandler.java:127)
> at
>
> org.wymiwyg.wrhapi.util.pathmappings.PathMappingHandler.handle(PathMappingHandler.java:102)
> at
>
> org.apache.clerezza.platform.security.auth.AuthenticatingFilter$1.run(AuthenticatingFilter.java:94)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAsPrivileged(Subject.java:517)
> at
>
> org.apache.clerezza.platform.security.auth.AuthenticatingFilter.handle(AuthenticatingFilter.java:90)
> at org.wymiwyg.wrhapi.filter.impl.FilterRunner.handle(FilterRunner.java:56)
> at
>
> org.apache.clerezza.platform.xhtml2html.Xhtml2HtmlFilter.handle(Xhtml2HtmlFilter.java:73)
> at org.wymiwyg.wrhapi.filter.impl.FilterRunner.handle(FilterRunner.java:56)
> at
>
> org.wymiwyg.wrhapi.osgi.OsgiWebServerFactory$1.service(OsgiWebServerFactory.java:78)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:847)
> at
>
> org.eclipse.equinox.http.servlet.internal.ServletRegistration.handleRequest(ServletRegistration.java:90)
> at
>
> org.eclipse.equinox.http.servlet.internal.ProxyServlet.processAlias(ProxyServlet.java:109)
> at
>
> org.eclipse.equinox.http.servlet.internal.ProxyServlet.service(ProxyServlet.java:75)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:847)
> at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:532)
> at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:453)
> at
>
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:227)
> at
>
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:965)
> DEBUG qtp7908994-20 - /graph org.eclipse.jetty.util.log - [POST
> /graph]@14584367 org.eclipse.jetty.server.Request@de8a2f
> DEBUG qtp7908994-20 - /graph org.eclipse.jetty.util.log - RESPONSE /graph
>  500
> DEBUG qtp7908994-17 - Acceptor0
> SelectChannelConnector@0.0.0.0:8080org.eclipse.jetty.util.log -
> org.eclipse.jetty.io.nio.SelectorManager$SelectSet@1d0a5f9 JVM BUG(s) -
> cancelled keys 1 times
> DEBUG qtp7908994-23 org.eclipse.jetty.util.log - EOF
>
>
> B4. Options used: -Xmx512m -XX:MaxPermSize=128M
> Still no problem after parsing 5 times
>

Mime
  • Unnamed multipart/alternative (inline, None, 0 bytes)
View raw message