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From Aaron Morton <aa...@thelastpickle.com>
Subject Re: Cassandra crashed - possible JMX threads leak
Date Thu, 21 Oct 2010 05:49:57 GMT
Sounds like the problem discussed here http://wiki.apache.org/cassandra/Operations?highlight=(allocate)|(memory)

If you have the JNA jar it should work 
http://www.mail-archive.com/user@cassandra.apache.org/msg06284.html
http://www.riptano.com/blog/whats-new-cassandra-065

Aaron


On 21 Oct, 2010,at 06:29 PM, Frank LoVecchio <frank@isidorey.com> wrote:

I have a cluster of 3 0.7 beta 2 nodes (built today from the latest trunk) running on Large,
EBS-backed, x64 EC2 instances; RF=3.  I attempted to write somewhere near 500,000 records
every 15 minutes from a total of 5 different computers (using Pelops and multi-threading).
  Though my network blew up and I'm not quite sure how many records were inserted, I lost
a node a couple hours later, and the other 2 were at severely high memory useage.  Is this
a memory leak of some kind, or something I can configure / watch for in the future?

A nodetool does this:

[ec2-user@XXX bin]$ ./nodetool -h localhost ring
Address  Status State   Load         Token                            
          
                                                    XXX  
ipXXX   Down   Normal  564.76 MB       XXX      
ipXXX   Up       Normal  564.83 MB       XXX     
ipXXX   Up       Normal  563.06 MB       XXX     

A top on the box that is down shows this: (dual core x64)

Cpu(s): 19.9%us,  5.9%sy,  0.0%ni,  8.8%id, 57.3%wa,  0.0%hi,  0.0%si,  8.1%st
Mem:   7651528k total,  7611112k used,    40416k free,    66056k buffers
Swap:        0k total,        0k used,        0k free,  3294076k cached

PID USER      PR  NI  VIRT  RES  SHR S %CPU %MEM    TIME+  COMMAND          
                                                           
 
22514 root      20   0 5790m 4.0g 167m S    91.9        54.8 152:45.08 java    
      

I see this error in the log file:

ERROR [CompactionExecutor:1] 2010-10-21 01:35:05,318 AbstractCassandraDaemon.java (line 88)
Fatal exception in thread Thread[CompactionExecutor:1,1,main]
java.io.IOError: java.io.IOException: Cannot run program "ln": java.io.IOException: error=12,
Cannot allocate memory
	at org.apache.cassandra.db.ColumnFamilyStore.snapshot(ColumnFamilyStore.java:1368)
	at org.apache.cassandra.db.Table.snapshot(Table.java:163)
	at org.apache.cassandra.db.CompactionManager.doCompaction(CompactionManager.java:232)
	at org.apache.cassandra.db.CompactionManager$1.call(CompactionManager.java:106)
	at org.apache.cassandra.db.CompactionManager$1.call(CompactionManager.java:84)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
	at java.util.concurrent.FutureTask.run(FutureTask.java:166)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
	at java.lang.Thread.run(Thread.java:636)
Caused by: java.io.IOException: Cannot run program "ln": java.io.IOException: error=12, Cannot
allocate memory
	at java.lang.ProcessBuilder.start(ProcessBuilder.java:475)
	at org.apache.cassandra.io.util.FileUtils.createHardLinkWithExec(FileUtils.java:263)
	at org.apache.cassandra.io.util.FileUtils.createHardLink(FileUtils.java:229)
	at org.apache.cassandra.db.ColumnFamilyStore.snapshot(ColumnFamilyStore.java:1360)
	... 9 more
Caused by: java.io.IOException: java.io.IOException: error=12, Cannot allocate memory
	at java.lang.UNIXProcess.<init>(UNIXProcess.java:164)
	at java.lang.ProcessImpl.start(ProcessImpl.java:81)
	at java.lang.ProcessBuilder.start(ProcessBuilder.java:468)
	... 12 more
 

On Wed, Oct 20, 2010 at 3:16 PM, Jonathan Ellis <jbellis@gmail.com> wrote:
can you reproduce this by, say, running nodeprobe ring in a bash while loop?


On Wed, Oct 20, 2010 at 3:09 PM, Bill Au <bill.w.au@gmail.com> wrote:
> One of my Cassandra server crashed with the following:
>
> ERROR [ACCEPT-xxx.xxx.xxx/nnn.nnn.nnn.nnn] 2010-10-19 00:25:10,419
> CassandraDaemon.java (line 82) Uncaught exception in thread
> Thread[ACCEPT-xxx.xxx.xxx/nnn.nnn.nnn.nnn,5,main]
> java.lang.OutOfMemoryError: unable to create new native thread
>         at java.lang.Thread.start0(Native Method)
>         at java.lang.Thread.start(Thread.java:597)
>         at
> org.apache.cassandra.net.MessagingService$SocketThread.run(MessagingService.java:533)
>
>
> I took threads dump in the JVM on all the other Cassandra severs in my
> cluster.  They all have thousand of threads looking like this:
>
> "JMX server connection timeout 183373" daemon prio=10 tid=0x00002aad230db800
> nid=0x5cf6 in Object.wait() [0x00002aad7a316000]
>    java.lang.Thread.State: TIMED_WAITING (on object monitor)
>         at java.lang.Object.wait(Native Method)
>         at
> com.sun.jmx.remote.internal.ServerCommunicatorAdmin$Timeout.run(ServerCommunicatorAdmin.java:150)
>         - locked <0x00002aab056ccee0> (a [I)
>         at java.lang.Thread.run(Thread.java:619)
>
> It seems to me that there is a JMX threads leak in Cassandra.  NodeProbe
> creates a JMXConnector but never calls its close() method.  I tried setting
> jmx.remote.x.server.connection.timeout to 0 hoping that would disable the
> JMX server connection timeout threads.  But that did not make any
> difference.
>
> Has anyone else seen this?
>
> Bill
>



--
Jonathan Ellis
Project Chair, Apache Cassandra
co-founder of Riptano, the source for professional Cassandra support
http://riptano.com


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