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From Eric Chu <e...@rocketfuel.com>
Subject DataNucleus patches for Hive
Date Tue, 06 Aug 2013 23:39:40 GMT
Hi,

I'm a bit confused about what DataNucleus patches we should get for *Hive
0.11 with JDK 6*. It'd be great if people working on that could shed some
light on the subject. Thanks in advance!

After installing Hive 0.11 and applying the patch for HIVE-4619 (or else MR
queries will result in error), I will sometimes (but not always) see
DataNucleus error log messages as below:

13/08/06 12:32:33 ERROR DataNucleus.Plugin: Bundle "org.eclipse.jdt.core"
requires "org.eclipse.core.resources" but it cannot be resolved.
13/08/06 12:32:33 ERROR DataNucleus.Plugin: Bundle "org.eclipse.jdt.core"
requires "org.eclipse.core.runtime" but it cannot be resolved.
13/08/06 12:32:33 ERROR DataNucleus.Plugin: Bundle "org.eclipse.jdt.core"
requires "org.eclipse.text" but it cannot be resolved.

HIVE-2015 was opened for this issue, but the last comment there said it was
fixed through HIVE-3632, whose purpose is to upgrade DataNucleus to support
JDK 7. HIVE-3632 in turn was blocked by HIVE-4900 and broke HIVE-4942, both
of which have patches available in 12. So I ended up applying HIVE-4900,
HIVE-3632, and HIVE-4942, in that order. However, afterward, any query (MR,
select *, show tables) would result in error.

In the end, after I applied the patch for HIVE-4900, I haven't seen those
error messages and queries are still running fine. Are the other patches
not compatible with JDK 6?

*Error messages for SHOW TABLES after applying HIVE-4900, HIVE-3632, and
HIVE-4942:*

FAILED: Error in metadata: java.lang.RuntimeException: Unable to
instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
13/08/06 12:31:01 ERROR exec.Task: FAILED: Error in metadata:
java.lang.RuntimeException: Unable to instantiate
org.apache.hadoop.hive.metastore.HiveMetaStoreClient
org.apache.hadoop.hive.ql.metadata.HiveException:
java.lang.RuntimeException: Unable to instantiate
org.apache.hadoop.hive.metastore.HiveMetaStoreClient
 at org.apache.hadoop.hive.ql.metadata.Hive.getDatabase(Hive.java:1140)
at org.apache.hadoop.hive.ql.metadata.Hive.databaseExists(Hive.java:1125)
 at org.apache.hadoop.hive.ql.exec.DDLTask.showTables(DDLTask.java:2265)
at org.apache.hadoop.hive.ql.exec.DDLTask.execute(DDLTask.java:337)
 at org.apache.hadoop.hive.ql.exec.Task.executeTask(Task.java:144)
at
org.apache.hadoop.hive.ql.exec.TaskRunner.runSequential(TaskRunner.java:57)
 at org.apache.hadoop.hive.ql.Driver.launchTask(Driver.java:1361)
at org.apache.hadoop.hive.ql.Driver.execute(Driver.java:1146)
 at org.apache.hadoop.hive.ql.Driver.run(Driver.java:948)
at org.apache.hadoop.hive.cli.CliDriver.processLocalCmd(CliDriver.java:261)
 at org.apache.hadoop.hive.cli.CliDriver.processCmd(CliDriver.java:218)
at org.apache.hadoop.hive.cli.CliDriver.processLine(CliDriver.java:415)
 at org.apache.hadoop.hive.cli.CliDriver.run(CliDriver.java:758)
at org.apache.hadoop.hive.cli.CliDriver.main(CliDriver.java:616)
 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
 at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
 at org.apache.hadoop.util.RunJar.main(RunJar.java:208)
Caused by: java.lang.RuntimeException: Unable to instantiate
org.apache.hadoop.hive.metastore.HiveMetaStoreClient
 at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1139)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:51)
 at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:61)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2284)
 at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2295)
at org.apache.hadoop.hive.ql.metadata.Hive.getDatabase(Hive.java:1136)
 ... 18 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
 at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
 at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1137)
 ... 23 more
Caused by: javax.jdo.JDOFatalInternalException: Unexpected exception caught.
NestedThrowables:
java.lang.reflect.InvocationTargetException
 at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1186)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:803)
 at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:698)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:262)
 at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:291)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:224)
 at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:199)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:70)
 at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:130)
at
org.apache.hadoop.hive.metastore.RetryingRawStore.<init>(RetryingRawStore.java:62)
 at
org.apache.hadoop.hive.metastore.RetryingRawStore.getProxy(RetryingRawStore.java:71)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:413)
 at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:401)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:439)
 at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:325)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:285)
 at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:53)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:58)
 at
org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4102)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:121)
 ... 28 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
 at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
 at java.lang.reflect.Method.invoke(Method.java:597)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1958)
 at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1953)
 at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1159)
... 47 more
Caused by: java.lang.NoSuchFieldError: NUCLEUS_CONTEXT_LOADER
at org.datanucleus.NucleusContext.<clinit>(NucleusContext.java:105)
 at
org.datanucleus.api.jdo.JDOPersistenceManagerFactory.<init>(JDOPersistenceManagerFactory.java:395)
at
org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:294)
 at
org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:195)
... 55 more

FAILED: Execution Error, return code 1 from
org.apache.hadoop.hive.ql.exec.DDLTask
13/08/06 12:31:01 ERROR ql.Driver: FAILED: Execution Error, return code 1
from org.apache.hadoop.hive.ql.exec.DDLTask

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