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From Eric Chu <e...@rocketfuel.com>
Subject Re: DataNucleus patches for Hive
Date Tue, 20 Aug 2013 17:29:37 GMT
Xuefu,

Indeed that's the problem and "ant very-clean" also fixed the problem.

Thanks,

Eric

On Tue, Aug 6, 2013 at 5:10 PM, Xuefu Zhang <xzhang@cloudera.com> wrote:

> You probably have mix-matched datanucleus libraries in your lib/ folder.
> You should only three 3.2.x files if you do "ls datanu*". To avoid that,
> you need to do "ant very-clean" before building hive.
>
> --Xuefu
>
>
> On Tue, Aug 6, 2013 at 4:39 PM, Eric Chu <echu@rocketfuel.com> wrote:
>
> > Hi,
> >
> > I'm a bit confused about what DataNucleus patches we should get for *Hive
> > 0.11 with JDK 6*. It'd be great if people working on that could shed some
> > light on the subject. Thanks in advance!
> >
> > After installing Hive 0.11 and applying the patch for HIVE-4619 (or else
> MR
> > queries will result in error), I will sometimes (but not always) see
> > DataNucleus error log messages as below:
> >
> > 13/08/06 12:32:33 ERROR DataNucleus.Plugin: Bundle "org.eclipse.jdt.core"
> > requires "org.eclipse.core.resources" but it cannot be resolved.
> > 13/08/06 12:32:33 ERROR DataNucleus.Plugin: Bundle "org.eclipse.jdt.core"
> > requires "org.eclipse.core.runtime" but it cannot be resolved.
> > 13/08/06 12:32:33 ERROR DataNucleus.Plugin: Bundle "org.eclipse.jdt.core"
> > requires "org.eclipse.text" but it cannot be resolved.
> >
> > HIVE-2015 was opened for this issue, but the last comment there said it
> was
> > fixed through HIVE-3632, whose purpose is to upgrade DataNucleus to
> support
> > JDK 7. HIVE-3632 in turn was blocked by HIVE-4900 and broke HIVE-4942,
> both
> > of which have patches available in 12. So I ended up applying HIVE-4900,
> > HIVE-3632, and HIVE-4942, in that order. However, afterward, any query
> (MR,
> > select *, show tables) would result in error.
> >
> > In the end, after I applied the patch for HIVE-4900, I haven't seen those
> > error messages and queries are still running fine. Are the other patches
> > not compatible with JDK 6?
> >
> > *Error messages for SHOW TABLES after applying HIVE-4900, HIVE-3632, and
> > HIVE-4942:*
> >
> > FAILED: Error in metadata: java.lang.RuntimeException: Unable to
> > instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
> > 13/08/06 12:31:01 ERROR exec.Task: FAILED: Error in metadata:
> > java.lang.RuntimeException: Unable to instantiate
> > org.apache.hadoop.hive.metastore.HiveMetaStoreClient
> > org.apache.hadoop.hive.ql.metadata.HiveException:
> > java.lang.RuntimeException: Unable to instantiate
> > org.apache.hadoop.hive.metastore.HiveMetaStoreClient
> >  at org.apache.hadoop.hive.ql.metadata.Hive.getDatabase(Hive.java:1140)
> > at org.apache.hadoop.hive.ql.metadata.Hive.databaseExists(Hive.java:1125)
> >  at org.apache.hadoop.hive.ql.exec.DDLTask.showTables(DDLTask.java:2265)
> > at org.apache.hadoop.hive.ql.exec.DDLTask.execute(DDLTask.java:337)
> >  at org.apache.hadoop.hive.ql.exec.Task.executeTask(Task.java:144)
> > at
> >
> org.apache.hadoop.hive.ql.exec.TaskRunner.runSequential(TaskRunner.java:57)
> >  at org.apache.hadoop.hive.ql.Driver.launchTask(Driver.java:1361)
> > at org.apache.hadoop.hive.ql.Driver.execute(Driver.java:1146)
> >  at org.apache.hadoop.hive.ql.Driver.run(Driver.java:948)
> > at
> org.apache.hadoop.hive.cli.CliDriver.processLocalCmd(CliDriver.java:261)
> >  at org.apache.hadoop.hive.cli.CliDriver.processCmd(CliDriver.java:218)
> > at org.apache.hadoop.hive.cli.CliDriver.processLine(CliDriver.java:415)
> >  at org.apache.hadoop.hive.cli.CliDriver.run(CliDriver.java:758)
> > at org.apache.hadoop.hive.cli.CliDriver.main(CliDriver.java:616)
> >  at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> > at
> >
> >
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
> >  at
> >
> >
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> > at java.lang.reflect.Method.invoke(Method.java:597)
> >  at org.apache.hadoop.util.RunJar.main(RunJar.java:208)
> > Caused by: java.lang.RuntimeException: Unable to instantiate
> > org.apache.hadoop.hive.metastore.HiveMetaStoreClient
> >  at
> >
> >
> org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1139)
> > at
> >
> >
> org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:51)
> >  at
> >
> >
> org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:61)
> > at
> >
> >
> org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2284)
> >  at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2295)
> > at org.apache.hadoop.hive.ql.metadata.Hive.getDatabase(Hive.java:1136)
> >  ... 18 more
> > Caused by: java.lang.reflect.InvocationTargetException
> > at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> >  at
> >
> >
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
> > at
> >
> >
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
> >  at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
> > at
> >
> >
> org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1137)
> >  ... 23 more
> > Caused by: javax.jdo.JDOFatalInternalException: Unexpected exception
> > caught.
> > NestedThrowables:
> > java.lang.reflect.InvocationTargetException
> >  at
> >
> >
> javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1186)
> > at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:803)
> >  at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:698)
> > at
> > org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:262)
> >  at
> >
> >
> org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:291)
> > at
> >
> >
> org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:224)
> >  at
> >
> org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:199)
> > at
> org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:70)
> >  at
> >
> >
> org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:130)
> > at
> >
> >
> org.apache.hadoop.hive.metastore.RetryingRawStore.<init>(RetryingRawStore.java:62)
> >  at
> >
> >
> org.apache.hadoop.hive.metastore.RetryingRawStore.getProxy(RetryingRawStore.java:71)
> > at
> >
> >
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:413)
> >  at
> >
> >
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:401)
> > at
> >
> >
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:439)
> >  at
> >
> >
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:325)
> > at
> >
> >
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:285)
> >  at
> >
> >
> org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:53)
> > at
> >
> >
> org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:58)
> >  at
> >
> >
> org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4102)
> > at
> >
> >
> org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:121)
> >  ... 28 more
> > Caused by: java.lang.reflect.InvocationTargetException
> > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> >  at
> >
> >
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
> > at
> >
> >
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> >  at java.lang.reflect.Method.invoke(Method.java:597)
> > at javax.jdo.JDOHelper$16.run(JDOHelper.java:1958)
> >  at java.security.AccessController.doPrivileged(Native Method)
> > at javax.jdo.JDOHelper.invoke(JDOHelper.java:1953)
> >  at
> >
> >
> javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1159)
> > ... 47 more
> > Caused by: java.lang.NoSuchFieldError: NUCLEUS_CONTEXT_LOADER
> > at org.datanucleus.NucleusContext.<clinit>(NucleusContext.java:105)
> >  at
> >
> >
> org.datanucleus.api.jdo.JDOPersistenceManagerFactory.<init>(JDOPersistenceManagerFactory.java:395)
> > at
> >
> >
> org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:294)
> >  at
> >
> >
> org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:195)
> > ... 55 more
> >
> > FAILED: Execution Error, return code 1 from
> > org.apache.hadoop.hive.ql.exec.DDLTask
> > 13/08/06 12:31:01 ERROR ql.Driver: FAILED: Execution Error, return code 1
> > from org.apache.hadoop.hive.ql.exec.DDLTask
> >
>

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