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From Kshitij Shukla <kshiti...@cisinlabs.com>
Subject [CIS-CMMI-3] IllegalArgumentException: Row length 41221 is > 32767
Date Thu, 21 Jan 2016 13:39:41 GMT
Hello everyone,

Software stack is *nutch-branch-2.3.1, gora-hbase 0.6.1 Hadoop 2.5.2, 
hbase-0.98.8-hadoop2

* I have added a set of seeds to crawl using this command
*
./bin/crawl /largeSeeds 1 http://localhost:8983/solr/ddcd 4*

For first iteration all of the commands(*inject, **generate, **fetch, 
**parse, **update-table, **Indexer & delete duplicates.*) got executed 
successfully.
For second iteration, *"CrawlDB update" *command got failed (please see 
error log for reference), because of failure of this command the whole 
process gets terminated.


****************************************************LOG 
START************************************************************************************************
16/01/20 02:45:19 INFO parse.ParserJob: ParserJob: finished at 
2016-01-20 02:45:19, time elapsed: 00:06:57
CrawlDB update for 1
/usr/share/searchEngine/nutch-branch-2.3.1/runtime/deploy/bin/nutch 
updatedb -D mapred.reduce.tasks=2 -D mapred.child.java.opts=-Xmx1000m -D 
mapred.reduce.tasks.speculative.execution=false -D 
mapred.map.tasks.speculative.execution=false -D 
mapred.compress.map.output=true 1453230757-13191 -crawlId 1
16/01/20 02:45:27 INFO crawl.DbUpdaterJob: DbUpdaterJob: starting at 
2016-01-20 02:45:27
16/01/20 02:45:27 INFO crawl.DbUpdaterJob: DbUpdaterJob: batchId: 
1453230757-13191
16/01/20 02:45:27 INFO plugin.PluginRepository: Plugins: looking in: 
/tmp/hadoop-root/hadoop-unjar5654418190157422003/classes/plugins
16/01/20 02:45:28 INFO plugin.PluginRepository: Plugin Auto-activation 
mode: [true]
16/01/20 02:45:28 INFO plugin.PluginRepository: Registered Plugins:
16/01/20 02:45:28 INFO plugin.PluginRepository:     HTTP Framework 
(lib-http)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Html Parse Plug-in 
(parse-html)
16/01/20 02:45:28 INFO plugin.PluginRepository:     MetaTags 
(parse-metatags)
16/01/20 02:45:28 INFO plugin.PluginRepository:     the nutch core 
extension points (nutch-extensionpoints)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Basic Indexing 
Filter (index-basic)
16/01/20 02:45:28 INFO plugin.PluginRepository:     XML Libraries (lib-xml)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Anchor Indexing 
Filter (index-anchor)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Basic URL Normalizer 
(urlnormalizer-basic)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Language 
Identification Parser/Filter (language-identifier)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Metadata Indexing 
Filter (index-metadata)
16/01/20 02:45:28 INFO plugin.PluginRepository:     CyberNeko HTML 
Parser (lib-nekohtml)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Subcollection 
indexing and query filter (subcollection)
16/01/20 02:45:28 INFO plugin.PluginRepository: SOLRIndexWriter 
(indexer-solr)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Rel-Tag microformat 
Parser/Indexer/Querier (microformats-reltag)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Http / Https 
Protocol Plug-in (protocol-httpclient)
16/01/20 02:45:28 INFO plugin.PluginRepository:     JavaScript Parser 
(parse-js)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Tika Parser Plug-in 
(parse-tika)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Top Level Domain 
Plugin (tld)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Regex URL Filter 
Framework (lib-regex-filter)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Regex URL Normalizer 
(urlnormalizer-regex)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Link Analysis 
Scoring Plug-in (scoring-link)
16/01/20 02:45:28 INFO plugin.PluginRepository:     OPIC Scoring Plug-in 
(scoring-opic)
16/01/20 02:45:28 INFO plugin.PluginRepository:     More Indexing Filter 
(index-more)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Http Protocol 
Plug-in (protocol-http)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Creative Commons 
Plugins (creativecommons)
16/01/20 02:45:28 INFO plugin.PluginRepository: Registered Extension-Points:
16/01/20 02:45:28 INFO plugin.PluginRepository:     Parse Filter 
(org.apache.nutch.parse.ParseFilter)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Nutch Index Cleaning 
Filter (org.apache.nutch.indexer.IndexCleaningFilter)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Nutch Content Parser 
(org.apache.nutch.parse.Parser)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Nutch URL Filter 
(org.apache.nutch.net.URLFilter)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Nutch Scoring 
(org.apache.nutch.scoring.ScoringFilter)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Nutch URL Normalizer 
(org.apache.nutch.net.URLNormalizer)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Nutch Protocol 
(org.apache.nutch.protocol.Protocol)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Nutch Index Writer 
(org.apache.nutch.indexer.IndexWriter)
16/01/20 02:45:28 INFO plugin.PluginRepository:     Nutch Indexing 
Filter (org.apache.nutch.indexer.IndexingFilter)
16/01/20 02:45:29 INFO Configuration.deprecation: 
mapred.map.tasks.speculative.execution is deprecated. Instead, use 
mapreduce.map.speculative
16/01/20 02:45:29 INFO Configuration.deprecation: 
mapred.reduce.tasks.speculative.execution is deprecated. Instead, use 
mapreduce.reduce.speculative
16/01/20 02:45:29 INFO Configuration.deprecation: 
mapred.compress.map.output is deprecated. Instead, use 
mapreduce.map.output.compress
16/01/20 02:45:29 INFO Configuration.deprecation: mapred.reduce.tasks is 
deprecated. Instead, use mapreduce.job.reduces
16/01/20 02:45:29 INFO zookeeper.RecoverableZooKeeper: Process 
identifier=hconnection-0x60a2630a connecting to ZooKeeper 
ensemble=localhost:2181
16/01/20 02:45:29 INFO zookeeper.ZooKeeper: Client 
environment:zookeeper.version=3.4.6-1569965, built on 02/20/2014 09:09 GMT
16/01/20 02:45:29 INFO zookeeper.ZooKeeper: Client 
environment:host.name=cism479
16/01/20 02:45:29 INFO zookeeper.ZooKeeper: Client 
environment:java.version=1.8.0_65
16/01/20 02:45:29 INFO zookeeper.ZooKeeper: Client 
environment:java.vendor=Oracle Corporation
16/01/20 02:45:29 INFO zookeeper.ZooKeeper: Client 
environment:java.home=/usr/lib/jvm/jdk1.8.0_65/jre
16/01/20 02:45:35 INFO zookeeper.ClientCnxn: EventThread shut down
16/01/20 02:45:35 INFO mapreduce.JobSubmitter: number of splits:2
16/01/20 02:45:36 INFO mapreduce.JobSubmitter: Submitting tokens for 
job: job_1453210838763_0011
16/01/20 02:45:36 INFO impl.YarnClientImpl: Submitted application 
application_1453210838763_0011
16/01/20 02:45:36 INFO mapreduce.Job: The url to track the job: 
http://cism479:8088/proxy/application_1453210838763_0011/
16/01/20 02:45:36 INFO mapreduce.Job: Running job: job_1453210838763_0011
16/01/20 02:45:48 INFO mapreduce.Job: Job job_1453210838763_0011 running 
in uber mode : false
16/01/20 02:45:48 INFO mapreduce.Job:  map 0% reduce 0%
16/01/20 02:47:31 INFO mapreduce.Job:  map 33% reduce 0%
16/01/20 02:47:47 INFO mapreduce.Job:  map 50% reduce 0%
16/01/20 02:48:08 INFO mapreduce.Job:  map 83% reduce 0%
16/01/20 02:48:16 INFO mapreduce.Job:  map 100% reduce 0%
16/01/20 02:48:31 INFO mapreduce.Job:  map 100% reduce 31%
16/01/20 02:48:34 INFO mapreduce.Job:  map 100% reduce 33%
16/01/20 02:50:30 INFO mapreduce.Job:  map 100% reduce 34%
16/01/20 03:01:18 INFO mapreduce.Job:  map 100% reduce 35%
16/01/20 03:11:58 INFO mapreduce.Job:  map 100% reduce 36%
16/01/20 03:22:50 INFO mapreduce.Job:  map 100% reduce 37%
16/01/20 03:24:22 INFO mapreduce.Job:  map 100% reduce 50%
16/01/20 03:24:35 INFO mapreduce.Job:  map 100% reduce 82%
16/01/20 03:24:38 INFO mapreduce.Job:  map 100% reduce 83%
16/01/20 03:26:33 INFO mapreduce.Job:  map 100% reduce 84%
16/01/20 03:37:35 INFO mapreduce.Job:  map 100% reduce 85%
16/01/20 03:39:38 INFO mapreduce.Job: Task Id : 
attempt_1453210838763_0011_r_000001_0, Status : FAILED
*Error: java.lang.IllegalArgumentException: Row length 41221 is > 32767*
     at org.apache.hadoop.hbase.client.Mutation.checkRow(Mutation.java:506)
     at org.apache.hadoop.hbase.client.Mutation.checkRow(Mutation.java:487)
     at org.apache.hadoop.hbase.client.Get.<init>(Get.java:89)
     at org.apache.gora.hbase.store.HBaseStore.get(HBaseStore.java:208)
     at org.apache.gora.hbase.store.HBaseStore.get(HBaseStore.java:79)
     at org.apache.gora.store.impl.DataStoreBase.get(DataStoreBase.java:156)
     at org.apache.gora.store.impl.DataStoreBase.get(DataStoreBase.java:56)
     at 
org.apache.nutch.crawl.DbUpdateReducer.reduce(DbUpdateReducer.java:114)
     at 
org.apache.nutch.crawl.DbUpdateReducer.reduce(DbUpdateReducer.java:42)
     at org.apache.hadoop.mapreduce.Reducer.run(Reducer.java:171)
     at 
org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:627)
     at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:389)
     at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:168)
     at java.security.AccessController.doPrivileged(Native Method)
     at javax.security.auth.Subject.doAs(Subject.java:422)
     at 
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1614)
     at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:163)

16/01/20 03:39:39 INFO mapreduce.Job:  map 100% reduce 50%
16/01/20 03:39:52 INFO mapreduce.Job:  map 100% reduce 82%
16/01/20 03:39:55 INFO mapreduce.Job:  map 100% reduce 83%
16/01/20 03:41:56 INFO mapreduce.Job:  map 100% reduce 84%
16/01/20 03:53:39 INFO mapreduce.Job:  map 100% reduce 85%
16/01/20 03:55:49 INFO mapreduce.Job: Task Id : 
attempt_1453210838763_0011_r_000001_1, Status : FAILED
*Error: java.lang.IllegalArgumentException: Row length 41221 is > 32767*
     at org.apache.hadoop.hbase.client.Mutation.checkRow(Mutation.java:506)
     at org.apache.hadoop.hbase.client.Mutation.checkRow(Mutation.java:487)
     at org.apache.hadoop.hbase.client.Get.<init>(Get.java:89)
     at org.apache.gora.hbase.store.HBaseStore.get(HBaseStore.java:208)
     at org.apache.gora.hbase.store.HBaseStore.get(HBaseStore.java:79)
     at org.apache.gora.store.impl.DataStoreBase.get(DataStoreBase.java:156)
     at org.apache.gora.store.impl.DataStoreBase.get(DataStoreBase.java:56)
     at 
org.apache.nutch.crawl.DbUpdateReducer.reduce(DbUpdateReducer.java:114)
     at 
org.apache.nutch.crawl.DbUpdateReducer.reduce(DbUpdateReducer.java:42)
     at org.apache.hadoop.mapreduce.Reducer.run(Reducer.java:171)
     at 
org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:627)
     at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:389)
     at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:168)
     at java.security.AccessController.doPrivileged(Native Method)
     at javax.security.auth.Subject.doAs(Subject.java:422)
     at 
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1614)
     at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:163)

16/01/20 03:55:50 INFO mapreduce.Job:  map 100% reduce 50%
16/01/20 03:56:01 INFO mapreduce.Job:  map 100% reduce 83%
16/01/20 03:58:02 INFO mapreduce.Job:  map 100% reduce 84%
16/01/20 04:10:09 INFO mapreduce.Job:  map 100% reduce 85%
16/01/20 04:12:33 INFO mapreduce.Job: Task Id : 
attempt_1453210838763_0011_r_000001_2, Status : FAILED
*Error: java.lang.IllegalArgumentException: Row length 41221 is > 32767*
     at org.apache.hadoop.hbase.client.Mutation.checkRow(Mutation.java:506)
     at org.apache.hadoop.hbase.client.Mutation.checkRow(Mutation.java:487)
     at org.apache.hadoop.hbase.client.Get.<init>(Get.java:89)
     at org.apache.gora.hbase.store.HBaseStore.get(HBaseStore.java:208)
     at org.apache.gora.hbase.store.HBaseStore.get(HBaseStore.java:79)
     at org.apache.gora.store.impl.DataStoreBase.get(DataStoreBase.java:156)
     at org.apache.gora.store.impl.DataStoreBase.get(DataStoreBase.java:56)
     at 
org.apache.nutch.crawl.DbUpdateReducer.reduce(DbUpdateReducer.java:114)
     at 
org.apache.nutch.crawl.DbUpdateReducer.reduce(DbUpdateReducer.java:42)
     at org.apache.hadoop.mapreduce.Reducer.run(Reducer.java:171)
     at 
org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:627)
     at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:389)
     at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:168)
     at java.security.AccessController.doPrivileged(Native Method)
     at javax.security.auth.Subject.doAs(Subject.java:422)
     at 
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1614)
     at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:163)

16/01/20 04:12:34 INFO mapreduce.Job:  map 100% reduce 50%
16/01/20 04:12:45 INFO mapreduce.Job:  map 100% reduce 82%
16/01/20 04:12:48 INFO mapreduce.Job:  map 100% reduce 83%
16/01/20 04:14:46 INFO mapreduce.Job:  map 100% reduce 84%
16/01/20 04:26:53 INFO mapreduce.Job:  map 100% reduce 85%
16/01/20 04:29:09 INFO mapreduce.Job:  map 100% reduce 100%
16/01/20 04:29:10 INFO mapreduce.Job: Job job_1453210838763_0011 failed 
with state FAILED due to: Task failed task_1453210838763_0011_r_000001
Job failed as tasks failed. failedMaps:0 failedReduces:1

16/01/20 04:29:11 INFO mapreduce.Job: Counters: 50
     File System Counters
         FILE: Number of bytes read=38378343
         FILE: Number of bytes written=115957636
         FILE: Number of read operations=0
         FILE: Number of large read operations=0
         FILE: Number of write operations=0
         HDFS: Number of bytes read=2382
         HDFS: Number of bytes written=0
         HDFS: Number of read operations=2
         HDFS: Number of large read operations=0
         HDFS: Number of write operations=0
     Job Counters
         Failed reduce tasks=4
         Launched map tasks=2
         Launched reduce tasks=5
         Data-local map tasks=2
         Total time spent by all maps in occupied slots (ms)=789909
         Total time spent by all reduces in occupied slots (ms)=30215090
         Total time spent by all map tasks (ms)=263303
         Total time spent by all reduce tasks (ms)=6043018
         Total vcore-seconds taken by all map tasks=263303
         Total vcore-seconds taken by all reduce tasks=6043018
         Total megabyte-seconds taken by all map tasks=808866816
         Total megabyte-seconds taken by all reduce tasks=30940252160
     Map-Reduce Framework
         Map input records=49929
         Map output records=1777904
         Map output bytes=382773368
         Map output materialized bytes=77228942
         Input split bytes=2382
         Combine input records=0
         Combine output records=0
         Reduce input groups=754170
         Reduce shuffle bytes=38318183
         Reduce input records=881156
         Reduce output records=754170
         Spilled Records=2659060
         Shuffled Maps =2
         Failed Shuffles=0
         Merged Map outputs=2
         GC time elapsed (ms)=17993
         CPU time spent (ms)=819690
         Physical memory (bytes) snapshot=4080136192
         Virtual memory (bytes) snapshot=15234293760
         Total committed heap usage (bytes)=4149739520
     Shuffle Errors
         BAD_ID=0
         CONNECTION=0
         IO_ERROR=0
         WRONG_LENGTH=0
         WRONG_MAP=0
         WRONG_REDUCE=0
     File Input Format Counters
         Bytes Read=0
     File Output Format Counters
         Bytes Written=0
Exception in thread "main" java.lang.RuntimeException: job failed: 
name=[1]update-table, jobid=job_1453210838763_0011
     at org.apache.nutch.util.NutchJob.waitForCompletion(NutchJob.java:120)
     at org.apache.nutch.crawl.DbUpdaterJob.run(DbUpdaterJob.java:111)
     at 
org.apache.nutch.crawl.DbUpdaterJob.updateTable(DbUpdaterJob.java:140)
     at org.apache.nutch.crawl.DbUpdaterJob.run(DbUpdaterJob.java:174)
     at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
     at org.apache.nutch.crawl.DbUpdaterJob.main(DbUpdaterJob.java:178)
     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
     at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
     at java.lang.reflect.Method.invoke(Method.java:497)
     at org.apache.hadoop.util.RunJar.main(RunJar.java:212)
Error running:
/usr/share/searchEngine/nutch-branch-2.3.1/runtime/deploy/bin/nutch 
updatedb -D mapred.reduce.tasks=2 -D mapred.child.java.opts=-Xmx1000m -D 
mapred.reduce.tasks.speculative.execution=false -D 
mapred.map.tasks.speculative.execution=false -D 
mapred.compress.map.output=true 1453230757-13191 -crawlId 1
Failed with exit value 1.
****************************************************LOG 
END************************************************************************************************

Please advise.

-- 

------------------------------

*Cyber Infrastructure (P) Limited, [CIS] **(CMMI Level 3 Certified)*

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*Ensuring the success of our clients and partners through our highly 
optimized Technology solutions.*

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<https://www.linkedin.com/company/cyber-infrastructure-private-limited> | 
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