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Date: Fri, 24 Aug 2012 13:59:42 +1100 (NCT)
From: "Zhihong Ted Yu (JIRA)" <jira@apache.org>
To: issues@hbase.apache.org
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Subject: [jira] [Commented] (HBASE-6586) Quarantine Corrupted HFiles
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    [ https://issues.apache.org/jira/browse/HBASE-6586?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13440901#comment-13440901 ] 

Zhihong Ted Yu commented on HBASE-6586:
---------------------------------------

@Jon:
As long as Hadoop QA shows green build (barring flaky tests) and your test doesn't turn up surprises, I am fine with integration.
                
> Quarantine Corrupted HFiles
> ---------------------------
>
>                 Key: HBASE-6586
>                 URL: https://issues.apache.org/jira/browse/HBASE-6586
>             Project: HBase
>          Issue Type: Improvement
>            Reporter: Jonathan Hsieh
>            Assignee: Jonathan Hsieh
>         Attachments: 0001-hbase-6568-hbck-quarantine-v6.patch, hbase-6586-92-v3.patch, hbase-6586-92-v8.patch, hbase-6586-94-v3.patch, hbase-6586-94-v8.patch, hbase-6586.patch, hbase-6586-trunk-v3.patch, hbase-6586-trunk-v4.patch, hbase-6586-trunk-v5.patch, hbase-6586-trunk-v6.patch, hbase-6586-trunk-v7.patch, hbase-6586-trunk-v8.patch
>
>
> We've encountered a few upgrades from 0.90 hbases + 20.2/1.x hdfs to 0.92 hbases + hdfs 2.x that get stuck.  I haven't been able to duplicate the problem in my dev environment but we suspect this may be related to HDFS-3731.  On the HBase side, it seems reasonable to quarantine what are most likely truncated hfiles, so that can could later be recovered.
> Here's an example of the exception we've encountered:
> {code}
> 2012-07-18 05:55:01,152 ERROR handler.OpenRegionHandler (OpenRegionHandler.java:openRegion(346)) - Failed open of region=user_mappings,080112102AA76EF98197605D341B9E6C5824D2BC|1001,1317824890618.eaed0e7abc6d27d28ff0e5a9b49c4c
> 0d. 
> java.io.IOException: java.lang.IllegalArgumentException: Invalid HFile version: 842220600 (expected to be between 1 and 2) 
> at org.apache.hadoop.hbase.io.hfile.FixedFileTrailer.readFromStream(FixedFileTrailer.java:306) 
> at org.apache.hadoop.hbase.io.hfile.HFile.pickReaderVersion(HFile.java:371) 
> at org.apache.hadoop.hbase.io.hfile.HFile.createReader(HFile.java:387) 
> at org.apache.hadoop.hbase.regionserver.StoreFile$Reader.<init>(StoreFile.java:1026) 
> at org.apache.hadoop.hbase.regionserver.StoreFile.open(StoreFile.java:485) 
> at org.apache.hadoop.hbase.regionserver.StoreFile.createReader(StoreFile.java:566) 
> at org.apache.hadoop.hbase.regionserver.Store.loadStoreFiles(Store.java:286) 
> at org.apache.hadoop.hbase.regionserver.Store.<init>(Store.java:223) 
> at org.apache.hadoop.hbase.regionserver.HRegion.instantiateHStore(HRegion.java:2534) 
> at org.apache.hadoop.hbase.regionserver.HRegion.initialize(HRegion.java:454) 
> at org.apache.hadoop.hbase.regionserver.HRegion.openHRegion(HRegion.java:3282) 
> at org.apache.hadoop.hbase.regionserver.HRegion.openHRegion(HRegion.java:3230) 
> at org.apache.hadoop.hbase.regionserver.handler.OpenRegionHandler.openRegion(OpenRegionHandler.java:331)
> at org.apache.hadoop.hbase.regionserver.handler.OpenRegionHandler.process(OpenRegionHandler.java:107)
> at org.apache.hadoop.hbase.executor.EventHandler.run(EventHandler.java:169) 
> at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) 
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) 
> at java.lang.Thread.run(Thread.java:619) 
> Caused by: java.lang.IllegalArgumentException: Invalid HFile version: 842220600 (expected to be between 1 and 2) 
> at org.apache.hadoop.hbase.io.hfile.HFile.checkFormatVersion(HFile.java:515) 
> at org.apache.hadoop.hbase.io.hfile.FixedFileTrailer.readFromStream(FixedFileTrailer.java:303) 
> ... 17 more
> {code}
> Specifically -- the FixedFileTrailer are incorrect, and seemingly missing.

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