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From l...@apache.org
Subject hbase git commit: HBASE-16960 RegionServer hang when aborting
Date Fri, 04 Nov 2016 08:00:38 GMT
Repository: hbase
Updated Branches:
  refs/heads/branch-1.3 3dc95c0e6 -> ffe82700b


HBASE-16960 RegionServer hang when aborting

Signed-off-by: Yu Li <liyu@apache.org>


Project: http://git-wip-us.apache.org/repos/asf/hbase/repo
Commit: http://git-wip-us.apache.org/repos/asf/hbase/commit/ffe82700
Tree: http://git-wip-us.apache.org/repos/asf/hbase/tree/ffe82700
Diff: http://git-wip-us.apache.org/repos/asf/hbase/diff/ffe82700

Branch: refs/heads/branch-1.3
Commit: ffe82700b9717f74bac579dd721dcac1a7c9817f
Parents: 3dc95c0
Author: binlijin <binlijin@gmail.com>
Authored: Fri Nov 4 14:06:37 2016 +0800
Committer: Yu Li <liyu@apache.org>
Committed: Fri Nov 4 14:09:12 2016 +0800

----------------------------------------------------------------------
 .../hadoop/hbase/regionserver/wal/FSHLog.java   |  21 +-
 .../hbase/regionserver/wal/SyncFuture.java      |  12 +-
 .../hbase/regionserver/TestWALLockup.java       | 285 ++++++++++++++++++-
 .../hbase/regionserver/wal/TestSyncFuture.java  |  50 ++++
 4 files changed, 365 insertions(+), 3 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/hbase/blob/ffe82700/hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/wal/FSHLog.java
----------------------------------------------------------------------
diff --git a/hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/wal/FSHLog.java
b/hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/wal/FSHLog.java
index 9993d62..c2b0177 100644
--- a/hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/wal/FSHLog.java
+++ b/hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/wal/FSHLog.java
@@ -64,6 +64,7 @@ import org.apache.hadoop.hbase.HConstants;
 import org.apache.hadoop.hbase.HRegionInfo;
 import org.apache.hadoop.hbase.HTableDescriptor;
 import org.apache.hadoop.hbase.classification.InterfaceAudience;
+import org.apache.hadoop.hbase.exceptions.TimeoutIOException;
 import org.apache.hadoop.hbase.io.util.HeapMemorySizeUtil;
 import org.apache.hadoop.hbase.util.Bytes;
 import org.apache.hadoop.hbase.util.ClassSize;
@@ -164,6 +165,8 @@ public class FSHLog implements WAL {
 
   private static final int DEFAULT_SLOW_SYNC_TIME_MS = 100; // in ms
 
+  private static final int DEFAULT_WAL_SYNC_TIMEOUT_MS = 5 * 60 * 1000; // in ms, 5min
+
   /**
    * The nexus at which all incoming handlers meet.  Does appends and sync with an ordering.
    * Appends and syncs are each put on the ring which means handlers need to
@@ -281,6 +284,8 @@ public class FSHLog implements WAL {
 
   private final int slowSyncNs;
 
+  private final long walSyncTimeout;
+
   // If live datanode count is lower than the default replicas value,
   // RollWriter will be triggered in each sync(So the RollWriter will be
   // triggered one by one in a short time). Using it as a workaround to slow
@@ -535,6 +540,8 @@ public class FSHLog implements WAL {
     this.slowSyncNs =
         1000000 * conf.getInt("hbase.regionserver.hlog.slowsync.ms",
           DEFAULT_SLOW_SYNC_TIME_MS);
+    this.walSyncTimeout = conf.getLong("hbase.regionserver.hlog.sync.timeout",
+        DEFAULT_WAL_SYNC_TIMEOUT_MS);
 
     // This is the 'writer' -- a single threaded executor.  This single thread 'consumes'
what is
     // put on the ring buffer.
@@ -1393,8 +1400,14 @@ public class FSHLog implements WAL {
   private Span blockOnSync(final SyncFuture syncFuture) throws IOException {
     // Now we have published the ringbuffer, halt the current thread until we get an answer
back.
     try {
-      syncFuture.get();
+      syncFuture.get(walSyncTimeout);
       return syncFuture.getSpan();
+    } catch (TimeoutIOException tioe) {
+      // SyncFuture reuse by thread, if TimeoutIOException happens, ringbuffer
+      // still refer to it, so if this thread use it next time may get a wrong
+      // result.
+      this.syncFuturesByHandler.remove(Thread.currentThread());
+      throw tioe;
     } catch (InterruptedException ie) {
       LOG.warn("Interrupted", ie);
       throw convertInterruptedExceptionToIOException(ie);
@@ -1799,6 +1812,12 @@ public class FSHLog implements WAL {
           } catch (Exception e) {
             // Failed append. Record the exception.
             this.exception = e;
+            // invoking cleanupOutstandingSyncsOnException when append failed with exception,
+            // it will cleanup existing sync requests recorded in syncFutures but not offered
to SyncRunner yet,
+            // so there won't be any sync future left over if no further truck published
to disruptor.
+            cleanupOutstandingSyncsOnException(sequence,
+                this.exception instanceof DamagedWALException ? this.exception
+                    : new DamagedWALException("On sync", this.exception));
             // Return to keep processing events coming off the ringbuffer
             return;
           } finally {

http://git-wip-us.apache.org/repos/asf/hbase/blob/ffe82700/hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/wal/SyncFuture.java
----------------------------------------------------------------------
diff --git a/hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/wal/SyncFuture.java
b/hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/wal/SyncFuture.java
index 7de8367..0720de8 100644
--- a/hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/wal/SyncFuture.java
+++ b/hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/wal/SyncFuture.java
@@ -21,6 +21,8 @@ import java.util.concurrent.ExecutionException;
 import java.util.concurrent.TimeUnit;
 
 import org.apache.hadoop.hbase.classification.InterfaceAudience;
+import org.apache.hadoop.hbase.exceptions.TimeoutIOException;
+import org.apache.hadoop.hbase.util.EnvironmentEdgeManager;
 import org.apache.htrace.Span;
 
 /**
@@ -105,6 +107,7 @@ class SyncFuture {
     this.doneSequence = NOT_DONE;
     this.ringBufferSequence = sequence;
     this.span = span;
+    this.throwable = null;
     return this;
   }
 
@@ -162,9 +165,16 @@ class SyncFuture {
     throw new UnsupportedOperationException();
   }
 
-  public synchronized long get() throws InterruptedException, ExecutionException {
+  public synchronized long get(long timeout) throws InterruptedException,
+      ExecutionException, TimeoutIOException {
+    final long done = EnvironmentEdgeManager.currentTime() + timeout;
     while (!isDone()) {
       wait(1000);
+      if (EnvironmentEdgeManager.currentTime() >= done) {
+        throw new TimeoutIOException("Failed to get sync result after "
+            + timeout + " ms for ringBufferSequence=" + this.ringBufferSequence
+            + ", WAL system stuck?");
+      }
     }
     if (this.throwable != null) throw new ExecutionException(this.throwable);
     return this.doneSequence;

http://git-wip-us.apache.org/repos/asf/hbase/blob/ffe82700/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/TestWALLockup.java
----------------------------------------------------------------------
diff --git a/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/TestWALLockup.java
b/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/TestWALLockup.java
index 56c6c60..d82d1df 100644
--- a/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/TestWALLockup.java
+++ b/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/TestWALLockup.java
@@ -18,7 +18,6 @@
  */
 package org.apache.hadoop.hbase.regionserver;
 
-
 import static org.junit.Assert.assertTrue;
 
 import java.io.IOException;
@@ -31,14 +30,21 @@ import org.apache.hadoop.conf.Configuration;
 import org.apache.hadoop.fs.FileSystem;
 import org.apache.hadoop.fs.Path;
 import org.apache.hadoop.hbase.CellScanner;
+import org.apache.hadoop.hbase.ChoreService;
+import org.apache.hadoop.hbase.CoordinatedStateManager;
 import org.apache.hadoop.hbase.HBaseTestingUtility;
 import org.apache.hadoop.hbase.HConstants;
 import org.apache.hadoop.hbase.HTableDescriptor;
 import org.apache.hadoop.hbase.Server;
+import org.apache.hadoop.hbase.ServerName;
 import org.apache.hadoop.hbase.TableName;
+import org.apache.hadoop.hbase.client.ClusterConnection;
 import org.apache.hadoop.hbase.client.Durability;
 import org.apache.hadoop.hbase.client.Put;
+import org.apache.hadoop.hbase.regionserver.wal.DamagedWALException;
 import org.apache.hadoop.hbase.regionserver.wal.FSHLog;
+import org.apache.hadoop.hbase.regionserver.wal.FailedLogCloseException;
+import org.apache.hadoop.hbase.regionserver.wal.WALActionsListener;
 import org.apache.hadoop.hbase.regionserver.wal.WALEdit;
 import org.apache.hadoop.hbase.testclassification.MediumTests;
 import org.apache.hadoop.hbase.util.Bytes;
@@ -47,6 +53,8 @@ import org.apache.hadoop.hbase.util.Threads;
 import org.apache.hadoop.hbase.wal.WAL;
 import org.apache.hadoop.hbase.wal.WALKey;
 import org.apache.hadoop.hbase.wal.WALProvider.Writer;
+import org.apache.hadoop.hbase.zookeeper.MetaTableLocator;
+import org.apache.hadoop.hbase.zookeeper.ZooKeeperWatcher;
 import org.junit.After;
 import org.junit.Before;
 import org.junit.Rule;
@@ -282,6 +290,281 @@ public class TestWALLockup {
   }
 
   /**
+   * Reproduce locking up that happens when there's no further syncs after
+   * append fails, and causing an isolated sync then infinite wait. See
+   * HBASE-16960. If below is broken, we will see this test timeout because it
+   * is locked up.
+   * <p/>
+   * Steps for reproduce:<br/>
+   * 1. Trigger server abort through dodgyWAL1<br/>
+   * 2. Add a {@link DummyWALActionsListener} to dodgyWAL2 to cause ringbuffer
+   * event handler thread sleep for a while thus keeping {@code endOfBatch}
+   * false<br/>
+   * 3. Publish a sync then an append which will throw exception, check whether
+   * the sync could return
+   */
+  @Test(timeout = 20000)
+  public void testLockup16960() throws IOException {
+    // A WAL that we can have throw exceptions when a flag is set.
+    class DodgyFSLog extends FSHLog {
+      // Set this when want the WAL to start throwing exceptions.
+      volatile boolean throwException = false;
+
+      public DodgyFSLog(FileSystem fs, Path root, String logDir,
+          Configuration conf) throws IOException {
+        super(fs, root, logDir, conf);
+      }
+
+      @Override
+      protected Writer createWriterInstance(Path path) throws IOException {
+        final Writer w = super.createWriterInstance(path);
+        return new Writer() {
+          @Override
+          public void close() throws IOException {
+            w.close();
+          }
+
+          @Override
+          public void sync() throws IOException {
+            if (throwException) {
+              throw new IOException(
+                  "FAKE! Failed to replace a bad datanode...SYNC");
+            }
+            w.sync();
+          }
+
+          @Override
+          public void append(Entry entry) throws IOException {
+            if (throwException) {
+              throw new IOException(
+                  "FAKE! Failed to replace a bad datanode...APPEND");
+            }
+            w.append(entry);
+          }
+
+          @Override
+          public long getLength() throws IOException {
+            return w.getLength();
+          }
+        };
+      }
+
+      @Override
+      public byte[][] rollWriter(boolean force) throws FailedLogCloseException,
+          IOException {
+        if (throwException) {
+          throw new FailedLogCloseException("testLockup16960");
+        }
+        return super.rollWriter(force);
+      }
+    }
+
+    // Mocked up server and regionserver services. Needed below.
+    Server server = new DummyServer(CONF, ServerName.valueOf(
+        "hostname1.example.org", 1234, 1L).toString());
+    RegionServerServices services = Mockito.mock(RegionServerServices.class);
+
+    CONF.setLong("hbase.regionserver.hlog.sync.timeout", 10000);
+
+    // OK. Now I have my mocked up Server & RegionServerServices and dodgy WAL,
+    // go ahead with test.
+    FileSystem fs = FileSystem.get(CONF);
+    Path rootDir = new Path(dir + getName());
+    DodgyFSLog dodgyWAL1 = new DodgyFSLog(fs, rootDir, getName(), CONF);
+
+    Path rootDir2 = new Path(dir + getName() + "2");
+    final DodgyFSLog dodgyWAL2 = new DodgyFSLog(fs, rootDir2, getName() + "2",
+        CONF);
+    // Add a listener to force ringbuffer event handler sleep for a while
+    dodgyWAL2.registerWALActionsListener(new DummyWALActionsListener());
+
+    // I need a log roller running.
+    LogRoller logRoller = new LogRoller(server, services);
+    logRoller.addWAL(dodgyWAL1);
+    logRoller.addWAL(dodgyWAL2);
+    // There is no 'stop' once a logRoller is running.. it just dies.
+    logRoller.start();
+    // Now get a region and start adding in edits.
+    HTableDescriptor htd = new HTableDescriptor(TableName.META_TABLE_NAME);
+    final HRegion region = initHRegion(tableName, null, null, dodgyWAL1);
+    byte[] bytes = Bytes.toBytes(getName());
+
+    try {
+      Put put = new Put(bytes);
+      put.addColumn(COLUMN_FAMILY_BYTES, Bytes.toBytes("1"), bytes);
+      WALKey key = new WALKey(region.getRegionInfo().getEncodedNameAsBytes(),
+          htd.getTableName());
+      WALEdit edit = new WALEdit();
+      CellScanner CellScanner = put.cellScanner();
+      assertTrue(CellScanner.advance());
+      edit.add(CellScanner.current());
+
+      LOG.info("SET throwing of exception on append");
+      dodgyWAL1.throwException = true;
+      // This append provokes a WAL roll request
+      dodgyWAL1.append(htd, region.getRegionInfo(), key, edit, true);
+      boolean exception = false;
+      try {
+        dodgyWAL1.sync();
+      } catch (Exception e) {
+        exception = true;
+      }
+      assertTrue("Did not get sync exception", exception);
+
+      // LogRoller call dodgyWAL1.rollWriter get FailedLogCloseException and
+      // cause server abort.
+      try {
+        // wait LogRoller exit.
+        Thread.sleep(50);
+      } catch (InterruptedException e) {
+        e.printStackTrace();
+      }
+
+      final CountDownLatch latch = new CountDownLatch(1);
+
+      // make RingBufferEventHandler sleep 1s, so the following sync
+      // endOfBatch=false
+      key = new WALKey(region.getRegionInfo().getEncodedNameAsBytes(),
+          TableName.valueOf("sleep"));
+      dodgyWAL2.append(htd, region.getRegionInfo(), key, edit, true);
+
+      Thread t = new Thread("Sync") {
+        public void run() {
+          try {
+            dodgyWAL2.sync();
+          } catch (IOException e) {
+            LOG.info("In sync", e);
+          }
+          latch.countDown();
+          LOG.info("Sync exiting");
+        };
+      };
+      t.setDaemon(true);
+      t.start();
+      try {
+        // make sure sync have published.
+        Thread.sleep(100);
+      } catch (InterruptedException e1) {
+        e1.printStackTrace();
+      }
+      // make append throw DamagedWALException
+      key = new WALKey(region.getRegionInfo().getEncodedNameAsBytes(),
+          TableName.valueOf("DamagedWALException"));
+      dodgyWAL2.append(htd, region.getRegionInfo(), key, edit, true);
+
+      while (latch.getCount() > 0) {
+        Threads.sleep(100);
+      }
+      assertTrue(server.isAborted());
+    } finally {
+      if (logRoller != null) {
+        logRoller.interrupt();
+      }
+      try {
+        if (region != null) {
+          region.close();
+        }
+        if (dodgyWAL1 != null) {
+          dodgyWAL1.close();
+        }
+        if (dodgyWAL2 != null) {
+          dodgyWAL2.close();
+        }
+      } catch (Exception e) {
+        LOG.info("On way out", e);
+      }
+    }
+  }
+
+  static class DummyServer implements Server {
+    private Configuration conf;
+    private String serverName;
+    private boolean isAborted = false;
+
+    public DummyServer(Configuration conf, String serverName) {
+      this.conf = conf;
+      this.serverName = serverName;
+    }
+
+    @Override
+    public Configuration getConfiguration() {
+      return conf;
+    }
+
+    @Override
+    public ZooKeeperWatcher getZooKeeper() {
+      return null;
+    }
+
+    @Override
+    public CoordinatedStateManager getCoordinatedStateManager() {
+      return null;
+    }
+
+    @Override
+    public ClusterConnection getConnection() {
+      return null;
+    }
+
+    @Override
+    public MetaTableLocator getMetaTableLocator() {
+      return null;
+    }
+
+    @Override
+    public ServerName getServerName() {
+      return ServerName.valueOf(this.serverName);
+    }
+
+    @Override
+    public void abort(String why, Throwable e) {
+      LOG.info("Aborting " + serverName);
+      this.isAborted = true;
+    }
+
+    @Override
+    public boolean isAborted() {
+      return this.isAborted;
+    }
+
+    @Override
+    public void stop(String why) {
+      this.isAborted = true;
+    }
+
+    @Override
+    public boolean isStopped() {
+      return this.isAborted;
+    }
+
+    @Override
+    public ChoreService getChoreService() {
+      return null;
+    }
+
+  }
+
+  static class DummyWALActionsListener extends WALActionsListener.Base {
+
+    @Override
+    public void visitLogEntryBeforeWrite(HTableDescriptor htd, WALKey logKey,
+        WALEdit logEdit) throws IOException {
+      if (logKey.getTablename().getNameAsString().equalsIgnoreCase("sleep")) {
+        try {
+          Thread.sleep(1000);
+        } catch (InterruptedException e) {
+          e.printStackTrace();
+        }
+      }
+      if (logKey.getTablename().getNameAsString()
+          .equalsIgnoreCase("DamagedWALException")) {
+        throw new DamagedWALException("Failed appending");
+      }
+    }
+
+  }
+
+  /**
    * @return A region on which you must call
    *         {@link HBaseTestingUtility#closeRegionAndWAL(HRegion)} when done.
    */

http://git-wip-us.apache.org/repos/asf/hbase/blob/ffe82700/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/wal/TestSyncFuture.java
----------------------------------------------------------------------
diff --git a/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/wal/TestSyncFuture.java
b/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/wal/TestSyncFuture.java
new file mode 100644
index 0000000..851ded4
--- /dev/null
+++ b/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/wal/TestSyncFuture.java
@@ -0,0 +1,50 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver.wal;
+
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.fail;
+
+import org.apache.hadoop.hbase.exceptions.TimeoutIOException;
+import org.apache.hadoop.hbase.testclassification.RegionServerTests;
+import org.apache.hadoop.hbase.testclassification.SmallTests;
+import org.junit.Test;
+import org.junit.experimental.categories.Category;
+
+@Category({ RegionServerTests.class, SmallTests.class })
+public class TestSyncFuture {
+
+  @Test(timeout = 60000)
+  public void testGet() throws Exception {
+    long timeout = 5000;
+    long txid = 100000;
+    SyncFuture syncFulture = new SyncFuture();
+    syncFulture.reset(txid);
+    syncFulture.done(txid, null);
+    assertEquals(txid, syncFulture.get(timeout));
+
+    syncFulture.reset(txid);
+    try {
+      syncFulture.get(timeout);
+      fail("Should have timed out but not");
+    } catch (TimeoutIOException e) {
+      // test passed
+    }
+  }
+
+}


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