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From "Hadoop QA (Commented) (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (MAPREDUCE-4072) User set java.library.path seems to overwrite default creating problems native lib loading
Date Mon, 02 Apr 2012 23:09:23 GMT

    [ https://issues.apache.org/jira/browse/MAPREDUCE-4072?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13244807#comment-13244807
] 

Hadoop QA commented on MAPREDUCE-4072:
--------------------------------------

-1 overall.  Here are the results of testing the latest attachment 
  http://issues.apache.org/jira/secure/attachment/12521053/MAPREDUCE-4072-branch-23_documentation.patch
  against trunk revision .

    +1 @author.  The patch does not contain any @author tags.

    -1 tests included.  The patch doesn't appear to include any new or modified tests.
                        Please justify why no new tests are needed for this patch.
                        Also please list what manual steps were performed to verify this patch.

    +1 javadoc.  The javadoc tool did not generate any warning messages.

    +1 javac.  The applied patch does not increase the total number of javac compiler warnings.

    +1 eclipse:eclipse.  The patch built with eclipse:eclipse.

    +1 findbugs.  The patch does not introduce any new Findbugs (version 1.3.9) warnings.

    +1 release audit.  The applied patch does not increase the total number of release audit
warnings.

    -1 core tests.  The patch failed these unit tests:
                  org.apache.hadoop.mapreduce.v2.TestMiniMRProxyUser
                  org.apache.hadoop.mapreduce.v2.TestSpeculativeExecution
                  org.apache.hadoop.mapred.TestSpecialCharactersInOutputPath
                  org.apache.hadoop.mapreduce.v2.TestRMNMInfo
                  org.apache.hadoop.mapred.TestReduceFetchFromPartialMem
                  org.apache.hadoop.mapred.TestLazyOutput
                  org.apache.hadoop.mapreduce.TestChild
                  org.apache.hadoop.mapred.TestReduceFetch
                  org.apache.hadoop.mapred.TestMiniMRBringup
                  org.apache.hadoop.mapred.TestMiniMRClientCluster
                  org.apache.hadoop.mapreduce.lib.output.TestJobOutputCommitter
                  org.apache.hadoop.mapreduce.v2.TestMROldApiJobs
                  org.apache.hadoop.mapreduce.v2.TestNonExistentJob
                  org.apache.hadoop.mapred.TestMiniMRChildTask
                  org.apache.hadoop.mapred.TestJobCounters
                  org.apache.hadoop.mapreduce.v2.TestUberAM
                  org.apache.hadoop.conf.TestNoDefaultsJobConf
                  org.apache.hadoop.mapred.TestJobSysDirWithDFS
                  org.apache.hadoop.mapreduce.v2.TestMRJobs
                  org.apache.hadoop.mapred.TestClientRedirect
                  org.apache.hadoop.mapred.TestJobCleanup
                  org.apache.hadoop.mapreduce.TestMapReduceLazyOutput

    +1 contrib tests.  The patch passed contrib unit tests.

Test results: https://builds.apache.org/job/PreCommit-MAPREDUCE-Build/2131//testReport/
Console output: https://builds.apache.org/job/PreCommit-MAPREDUCE-Build/2131//console

This message is automatically generated.
                
> User set java.library.path seems to overwrite default creating problems native lib loading
> ------------------------------------------------------------------------------------------
>
>                 Key: MAPREDUCE-4072
>                 URL: https://issues.apache.org/jira/browse/MAPREDUCE-4072
>             Project: Hadoop Map/Reduce
>          Issue Type: Bug
>          Components: mrv2
>            Reporter: Anupam Seth
>            Assignee: Anupam Seth
>         Attachments: MAPREDUCE-4072-branch-23.patch, MAPREDUCE-4072-branch-23_documentation.patch
>
>
> This was found by Peeyush Bishnoi.
> While running a distributed cache example with Hadoop-0.23,
> tasks are failing as follows:
> ------------------------------------------------------------------------------------------------------------
> Exception from container-launch:
> org.apache.hadoop.util.Shell$ExitCodeException: at
> org.apache.hadoop.util.Shell.runCommand(Shell.java:261) at
> org.apache.hadoop.util.Shell.run(Shell.java:188) at
> org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:381) at
> org.apache.hadoop.yarn.server.nodemanager.LinuxContainerExecutor.launchContainer(LinuxContainerExecutor.java:207)
> at
> org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:241)
> at
> org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:68)
> at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at
> java.util.concurrent.FutureTask.run(FutureTask.java:138) at
> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
> at java.lang.Thread.run(Thread.java:619) main : command provided 1 main : user
> is <user>
> ------------------------------------------------------------------------------------------------------------
> Same Pig script and command work successfully on 0.20
> See this in the stderr:
> Exception in thread "main" java.lang.ExceptionInInitializerError
>     at java.lang.Class.forName0(Native Method)
>     at java.lang.Class.forName(Class.java:247)
>     at
> org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:1179)
>     at
> org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:1149)
>     at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:1238)
>     at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:1264)
>     at org.apache.hadoop.security.Groups.(Groups.java:54)
>     at
> org.apache.hadoop.security.Groups.getUserToGroupsMappingService(Groups.java:178)
>     at
> org.apache.hadoop.security.UserGroupInformation.initUGI(UserGroupInformation.java:252)
>     at
> org.apache.hadoop.security.UserGroupInformation.initialize(UserGroupInformation.java:223)
>     at
> org.apache.hadoop.security.UserGroupInformation.setConfiguration(UserGroupInformation.java:265)
>     at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:75)
> Caused by: java.lang.RuntimeException: Bailing out since native library
> couldn't be loaded
>     at
> org.apache.hadoop.security.JniBasedUnixGroupsMapping.(JniBasedUnixGroupsMapping.java:48)
>     ... 12 more
> Pig command:
> $ pig -Dmapred.job.queue.name=<queue> -Dmapred.cache.archives=<archives>
-Dmapred.child.java.opts="-Djava.library.path=./ygeo/lib
> -Dip2geo.preLoadLibraries=<some other libs>" -Djava.io.tmpdir=/grid/0/tmp -Dmapred.create.symlink=yes
-Dmapred.job.map.memory.mb=3072 piggeoscript.pig

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