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From "Todd Lipcon (JIRA)" <j...@apache.org>
Subject [jira] Updated: (MAPREDUCE-2389) Spurious EOFExceptions reading SpillRecord index files
Date Wed, 16 Mar 2011 06:55:29 GMT

     [ https://issues.apache.org/jira/browse/MAPREDUCE-2389?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel

Todd Lipcon updated MAPREDUCE-2389:

    Attachment: stap-output.txt

Attached is the partial output of a systemtap script I wrote which tracks all access to files
named *.out.index. You can see the file is opened and successfully read a couple of times,
but the third time, it gets a spurious EOF reading the last 8 bytes of the file.

I manually verified this file on disk and it is not actually truncated or modified in any

> Spurious EOFExceptions reading SpillRecord index files
> ------------------------------------------------------
>                 Key: MAPREDUCE-2389
>                 URL: https://issues.apache.org/jira/browse/MAPREDUCE-2389
>             Project: Hadoop Map/Reduce
>          Issue Type: Bug
>          Components: tasktracker
>    Affects Versions: 0.22.0
>         Environment: Seen on RHEL 5.5, RHEL 6.0, local dirs on ext3, Java 6u20 and 6u24
>            Reporter: Todd Lipcon
>            Priority: Critical
>         Attachments: stap-output.txt
> In large jobs, I see around 1 shuffle fetch out of every million fetches fail with an
EOFException reading the SpillRecord index file. After lots of investigation, including systemtap,
it looks like the read() syscall is actually returning a premature "0" result for no reason,
so this is likely a kernel or filesystem bug which is exacerbated by some workload the TT

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