Return-Path: 
 <user-return-11877-apmail-hadoop-common-user-archive=hadoop.apache.org@hadoop.apache.org>
X-Original-To: apmail-hadoop-common-user-archive@www.apache.org
Delivered-To: apmail-hadoop-common-user-archive@www.apache.org
Received: from mail.apache.org (hermes.apache.org [140.211.11.3])
	by minotaur.apache.org (Postfix) with SMTP id 6E4E9106CD
	for <apmail-hadoop-common-user-archive@www.apache.org>;
 Mon, 18 Nov 2013 09:48:23 +0000 (UTC)
Received: (qmail 19883 invoked by uid 500); 18 Nov 2013 09:48:17 -0000
Delivered-To: apmail-hadoop-common-user-archive@hadoop.apache.org
Received: (qmail 19770 invoked by uid 500); 18 Nov 2013 09:48:17 -0000
Mailing-List: contact user-help@hadoop.apache.org; run by ezmlm
Precedence: bulk
List-Help: <mailto:user-help@hadoop.apache.org>
List-Unsubscribe: <mailto:user-unsubscribe@hadoop.apache.org>
List-Post: <mailto:user@hadoop.apache.org>
List-Id: <user.hadoop.apache.org>
Reply-To: user@hadoop.apache.org
Delivered-To: mailing list user@hadoop.apache.org
Received: (qmail 19761 invoked by uid 99); 18 Nov 2013 09:48:17 -0000
Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230)
    by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 18 Nov 2013 09:48:17 +0000
X-ASF-Spam-Status: No, hits=-0.1 required=5.0
	tests=HTML_MESSAGE,RCVD_IN_DNSWL_MED,SPF_PASS
X-Spam-Check-By: apache.org
Received-SPF: pass (nike.apache.org: local policy)
Received: from [130.238.7.73] (HELO lyra.its.uu.se) (130.238.7.73)
    by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 18 Nov 2013 09:48:10 +0000
X-Virus-Scanned: amavisd-new at uu.se
X-DKIM: Sendmail DKIM Filter v2.8.3 lyra.its.uu.se C5A743967D
DKIM-Signature: v=1; a=rsa-sha256; c=simple/simple; d=uu.se; s=centralsmtp;
	t=1384768069; i=@uu.se;
	bh=B9kbN+WWhL9YVhC/Y6bKfPeB9C8RXNW6VCQ6F85wQm0=;
	h=From:Mime-Version:Content-Type:Subject:Date:In-Reply-To:To:
	 References:Message-Id;
	b=TpjDqz8LUqcGHfl6MyrSgnSjR0424w/8QcXsNw+ebZg0fZ3vuuuJMQd+cE4gRoUgA
	 boltMs4ph95doCQnarMECNSienPBXZGbE/NwNS5yGyEE+WFXdsc5Vjf40Hmb5f3y8r
	 tU6UZqROgs9LRUHWWpsP51aODB+2hqkG3uS3MZSc=
Received: from dhcp-17-113.it.uu.se (dhcp-17-113.it.uu.se [130.238.17.113])
	(using TLSv1 with cipher AES128-SHA (128/128 bits))
	(No client certificate requested)
	by lyra.its.uu.se (Postfix) with ESMTPSA id C5A743967D
	for <user@hadoop.apache.org>; Mon, 18 Nov 2013 10:47:48 +0100 (CET)
From: Salman Toor <salman.toor@it.uu.se>
Mime-Version: 1.0 (Apple Message framework v1283)
Content-Type: multipart/alternative;
 boundary="Apple-Mail=_EF32833C-5F57-4712-9D38-5E28834377A0"
Subject: Re: C++ code with pipes and CLapack Libraries
Date: Mon, 18 Nov 2013 10:47:50 +0100
In-Reply-To: <F623BFE0-9EF4-44F6-8B1E-20DFCF8C598C@it.uu.se>
To: user@hadoop.apache.org
References: <F623BFE0-9EF4-44F6-8B1E-20DFCF8C598C@it.uu.se>
Message-Id: <16C714EE-B988-4769-88AB-A520096EB28D@it.uu.se>
X-Mailer: Apple Mail (2.1283)
X-Virus-Checked: Checked by ClamAV on apache.org


--Apple-Mail=_EF32833C-5F57-4712-9D38-5E28834377A0
Content-Transfer-Encoding: quoted-printable
Content-Type: text/plain;
	charset=us-ascii

Hi,=20

Can some say anything regarding the following problem?

Thanks in advance.

Regards..
Salman.=20


Salman Toor, PhD
salman.toor@it.uu.se



On Nov 15, 2013, at 6:54 PM, Salman Toor wrote:

> Hi,
>=20
> I am trying to run my C++ code using hadoop-1.2.1. I am using pipes. =
The code requires to access CLAPACK libraries. My test setup is based on =
single node. CLAPECK is installed on that node. Everything compiles =
without any problem but the when I run a job the maper hangs first and =
than failed. In the log files, there is no error messages. The only =
message I can see is
>=20
> org.apache.hadoop.mapred.Tesk: Communication exception: =
org.api.ipc.RemoteException: java.io.IOException: JvmValidate Failed. =
Ignoring request from task=20
>=20
> Without CLAPACK everything works fine.=20
>=20
> I have also set the LD_LIBRARY_PATH in my application.xml file=20
>=20
> <property>
> <name>mapred.child.env</name>
> =
<value>"LD_LIBRARY_PATH=3D/usr/lib64:/usr/local/lib:/home/my/CLAPACK-3.2.1=
"</value>
> </property>
>=20
> But no effect. Can some please give me some hint or redirect me to =
some link where I can learn how to use external libraries.=20
>=20
> /Salman.
>=20
> Salman Toor, PhD
> salman.toor@it.uu.se
>=20
>=20
>=20


--Apple-Mail=_EF32833C-5F57-4712-9D38-5E28834377A0
Content-Transfer-Encoding: quoted-printable
Content-Type: text/html;
	charset=us-ascii

<html><head></head><body style=3D"word-wrap: break-word; =
-webkit-nbsp-mode: space; -webkit-line-break: after-white-space; =
">Hi,&nbsp;<div><br></div><div>Can some say anything regarding the =
following problem?</div><div><br></div><div>Thanks in =
advance.</div><div><br></div><div>Regards..</div><div>Salman.&nbsp;</div><=
div><br></div><div><br><div apple-content-edited=3D"true">
<span class=3D"Apple-style-span" style=3D"border-collapse: separate; =
color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; =
font-variant: normal; font-weight: normal; letter-spacing: normal; =
line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: =
0px; text-transform: none; white-space: normal; widows: 2; word-spacing: =
0px; -webkit-border-horizontal-spacing: 0px; =
-webkit-border-vertical-spacing: 0px; =
-webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: =
auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div>Salman =
Toor, PhD</div><div><a =
href=3D"mailto:salman.toor@it.uu.se">salman.toor@it.uu.se</a></div><div><b=
r></div></span><br class=3D"Apple-interchange-newline">
</div>
<br><div><div>On Nov 15, 2013, at 6:54 PM, Salman Toor wrote:</div><br =
class=3D"Apple-interchange-newline"><blockquote type=3D"cite"><div =
style=3D"word-wrap: break-word; -webkit-nbsp-mode: space; =
-webkit-line-break: after-white-space; ">Hi,<div><br></div><div>I am =
trying to run my C++ code using hadoop-1.2.1. I am using pipes. The code =
requires to access CLAPACK libraries. My test setup is based on single =
node. CLAPECK is installed on that node. Everything compiles without any =
problem but the when I run a job the maper hangs first and than failed. =
In the log files, there is no error messages. The only message I can see =
is</div><div><br></div><div><font class=3D"Apple-style-span" =
color=3D"#b70f0a">org.apache.hadoop.mapred.Tesk: Communication =
exception: org.api.ipc.RemoteException: java.io.IOException: JvmValidate =
Failed. Ignoring request from task&nbsp;</font></div><div><font =
class=3D"Apple-style-span" color=3D"#b70f0a"><br></font></div><div>Without=
 CLAPACK everything works fine.&nbsp;</div><div><br></div><div>I have =
also set the LD_LIBRARY_PATH in my application.xml =
file&nbsp;</div><div><br></div><div>&lt;property&gt;</div><div>&lt;name&gt=
;mapred.child.env&lt;/name&gt;</div><div>&lt;value&gt;"LD_LIBRARY_PATH=3D/=
usr/lib64:/usr/local/lib:/home/my/CLAPACK-3.2.1"&lt;/value&gt;</div><div>&=
lt;/property&gt;</div><div><br></div><div>But no effect. Can some please =
give me some hint or redirect me to some link where I can learn how to =
use external =
libraries.&nbsp;</div><div><br></div><div>/Salman.</div><div><div><br><div=
 apple-content-edited=3D"true">
<span class=3D"Apple-style-span" style=3D"border-collapse: separate; =
font-family: Helvetica; font-style: normal; font-variant: normal; =
font-weight: normal; letter-spacing: normal; line-height: normal; =
orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: =
none; white-space: normal; widows: 2; word-spacing: 0px; =
-webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: =
0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: =
auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div>Salman =
Toor, PhD</div><div><a =
href=3D"mailto:salman.toor@it.uu.se">salman.toor@it.uu.se</a></div><div><b=
r></div></span><br class=3D"Apple-interchange-newline">
</div>
<br></div></div></div></blockquote></div><br></div></body></html>=

--Apple-Mail=_EF32833C-5F57-4712-9D38-5E28834377A0--