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From "Richard Lee (JIRA)" <j...@apache.org>
Subject [jira] Updated: (HADOOP-2080) ChecksumFileSystem checksum file size incorrect.
Date Sat, 20 Oct 2007 01:15:50 GMT

     [ https://issues.apache.org/jira/browse/HADOOP-2080?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Richard Lee updated HADOOP-2080:
--------------------------------

    Attachment: ChecksumFileSystem.java.patch

here's an svn diff done from the release-xxx dir.  I let my cluster run with this patch in
place for the day and i haven't seen any occurances of the out of space exception.

> ChecksumFileSystem checksum file size incorrect.
> ------------------------------------------------
>
>                 Key: HADOOP-2080
>                 URL: https://issues.apache.org/jira/browse/HADOOP-2080
>             Project: Hadoop
>          Issue Type: Bug
>          Components: fs
>    Affects Versions: 0.14.0, 0.14.1, 0.14.2
>         Environment: Sun jdk1.6.0_02 running on Linux CentOS 5
>            Reporter: Richard Lee
>         Attachments: ChecksumFileSystem.java.patch, TestInternalFilesystem.java
>
>
> Periodically, reduce tasks hang. When the log for the task is consulted, you see a stacktrace
that looks like this:
> 2007-10-18 17:02:04,227 WARN org.apache.hadoop.mapred.ReduceTask: java.io.IOException:
Insufficient space
> 	at org.apache.hadoop.fs.InMemoryFileSystem$RawInMemoryFileSystem$InMemoryOutputStream.write(InMemoryFileSystem.java:174)
> 	at org.apache.hadoop.fs.FSDataOutputStream$PositionCache.write(FSDataOutputStream.java:39)
> 	at java.io.DataOutputStream.write(DataOutputStream.java:90)
> 	at java.io.FilterOutputStream.write(FilterOutputStream.java:80)
> 	at org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSOutputSummer.writeChunk(ChecksumFileSystem.java:326)
> 	at org.apache.hadoop.fs.FSOutputSummer.writeChecksumChunk(FSOutputSummer.java:140)
> 	at org.apache.hadoop.fs.FSOutputSummer.flushBuffer(FSOutputSummer.java:122)
> 	at org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSOutputSummer.close(ChecksumFileSystem.java:310)
> 	at org.apache.hadoop.fs.FSDataOutputStream$PositionCache.close(FSDataOutputStream.java:49)
> 	at org.apache.hadoop.fs.FSDataOutputStream.close(FSDataOutputStream.java:64)
> 	at org.apache.hadoop.mapred.MapOutputLocation.getFile(MapOutputLocation.java:253)
> 	at org.apache.hadoop.mapred.ReduceTask$ReduceCopier$MapOutputCopier.copyOutput(ReduceTask.java:685)
> 	at org.apache.hadoop.mapred.ReduceTask$ReduceCopier$MapOutputCopier.run(ReduceTask.java:637)
> The problem stems from a miscalculation of the checksum file created in the InMemoryFileSystem
associated with the data being copied from a completed mapper task to the reducer task.
> The method used for calculating checksum file size is the following (ChecksumFileSystem:318):
> ((long)(Math.ceil((float)size/bytesPerSum)) + 1) * 4 + CHECKSUM_VERSION.length;
> The issue here is the cast to float.  Floating point numbers have only 24 bits of precision,
thus will return short values on any size over 0x1000000.  The fix is to replace this calculation
with something that doesn't cast to float.
> (((size+1)/bytesPerSum) + 2) * 4 + CHECKSUM_VERSION.length

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