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From epa...@apache.org
Subject hadoop git commit: MAPREDUCE-7053: Timed out tasks can fail to produce thread dump. Contributed by Jason Lowe.
Date Fri, 16 Feb 2018 14:23:40 GMT
Repository: hadoop
Updated Branches:
  refs/heads/branch-3.1 d6eb001da -> 02836d328


MAPREDUCE-7053: Timed out tasks can fail to produce thread dump. Contributed by Jason Lowe.

(cherry picked from commit 82f029f7b50679ea477a3a898e4ee400fa394adf)


Project: http://git-wip-us.apache.org/repos/asf/hadoop/repo
Commit: http://git-wip-us.apache.org/repos/asf/hadoop/commit/02836d32
Tree: http://git-wip-us.apache.org/repos/asf/hadoop/tree/02836d32
Diff: http://git-wip-us.apache.org/repos/asf/hadoop/diff/02836d32

Branch: refs/heads/branch-3.1
Commit: 02836d328279a4cf7d6bfd4f174e9978e84a6d45
Parents: d6eb001
Author: Eric Payne <epayne@apache.org>
Authored: Fri Feb 16 08:15:09 2018 -0600
Committer: Eric Payne <epayne@apache.org>
Committed: Fri Feb 16 08:19:03 2018 -0600

----------------------------------------------------------------------
 .../hadoop/mapred/TaskAttemptListenerImpl.java  | 15 +++--
 .../mapreduce/v2/app/TaskHeartbeatHandler.java  | 67 ++++++++++++++------
 .../mapred/TestTaskAttemptListenerImpl.java     | 54 ++++++++++++++--
 .../v2/app/TestTaskHeartbeatHandler.java        | 38 +++++++++++
 4 files changed, 145 insertions(+), 29 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/hadoop/blob/02836d32/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/main/java/org/apache/hadoop/mapred/TaskAttemptListenerImpl.java
----------------------------------------------------------------------
diff --git a/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/main/java/org/apache/hadoop/mapred/TaskAttemptListenerImpl.java
b/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/main/java/org/apache/hadoop/mapred/TaskAttemptListenerImpl.java
index 668d8ed..b04dac5 100644
--- a/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/main/java/org/apache/hadoop/mapred/TaskAttemptListenerImpl.java
+++ b/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/main/java/org/apache/hadoop/mapred/TaskAttemptListenerImpl.java
@@ -370,17 +370,22 @@ public class TaskAttemptListenerImpl extends CompositeService
         TypeConverter.toYarn(taskAttemptID);
 
     AMFeedback feedback = new AMFeedback();
+    feedback.setTaskFound(true);
+
     AtomicReference<TaskAttemptStatus> lastStatusRef =
         attemptIdToStatus.get(yarnAttemptID);
     if (lastStatusRef == null) {
-      LOG.error("Status update was called with illegal TaskAttemptId: "
-          + yarnAttemptID);
-      feedback.setTaskFound(false);
+      // The task is not known, but it could be in the process of tearing
+      // down gracefully or receiving a thread dump signal. Tolerate unknown
+      // tasks as long as they have unregistered recently.
+      if (!taskHeartbeatHandler.hasRecentlyUnregistered(yarnAttemptID)) {
+        LOG.error("Status update was called with illegal TaskAttemptId: "
+            + yarnAttemptID);
+        feedback.setTaskFound(false);
+      }
       return feedback;
     }
 
-    feedback.setTaskFound(true);
-
     // Propagating preemption to the task if TASK_PREEMPTION is enabled
     if (getConfig().getBoolean(MRJobConfig.TASK_PREEMPTION, false)
         && preemptionPolicy.isPreempted(yarnAttemptID)) {

http://git-wip-us.apache.org/repos/asf/hadoop/blob/02836d32/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/main/java/org/apache/hadoop/mapreduce/v2/app/TaskHeartbeatHandler.java
----------------------------------------------------------------------
diff --git a/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/main/java/org/apache/hadoop/mapreduce/v2/app/TaskHeartbeatHandler.java
b/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/main/java/org/apache/hadoop/mapreduce/v2/app/TaskHeartbeatHandler.java
index c438b35..f8f5015 100644
--- a/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/main/java/org/apache/hadoop/mapreduce/v2/app/TaskHeartbeatHandler.java
+++ b/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/main/java/org/apache/hadoop/mapreduce/v2/app/TaskHeartbeatHandler.java
@@ -71,12 +71,14 @@ public class TaskHeartbeatHandler extends AbstractService {
   private Thread lostTaskCheckerThread;
   private volatile boolean stopped;
   private long taskTimeOut;
+  private long unregisterTimeOut;
   private int taskTimeOutCheckInterval = 30 * 1000; // 30 seconds.
 
   private final EventHandler eventHandler;
   private final Clock clock;
   
   private ConcurrentMap<TaskAttemptId, ReportTime> runningAttempts;
+  private ConcurrentMap<TaskAttemptId, ReportTime> recentlyUnregisteredAttempts;
 
   public TaskHeartbeatHandler(EventHandler eventHandler, Clock clock,
       int numThreads) {
@@ -85,6 +87,8 @@ public class TaskHeartbeatHandler extends AbstractService {
     this.clock = clock;
     runningAttempts =
       new ConcurrentHashMap<TaskAttemptId, ReportTime>(16, 0.75f, numThreads);
+    recentlyUnregisteredAttempts =
+        new ConcurrentHashMap<TaskAttemptId, ReportTime>(16, 0.75f, numThreads);
   }
 
   @Override
@@ -92,6 +96,8 @@ public class TaskHeartbeatHandler extends AbstractService {
     super.serviceInit(conf);
     taskTimeOut = conf.getLong(
         MRJobConfig.TASK_TIMEOUT, MRJobConfig.DEFAULT_TASK_TIMEOUT_MILLIS);
+    unregisterTimeOut = conf.getLong(MRJobConfig.TASK_EXIT_TIMEOUT,
+        MRJobConfig.TASK_EXIT_TIMEOUT_DEFAULT);
 
     // enforce task timeout is at least twice as long as task report interval
     long taskProgressReportIntervalMillis = MRJobConfUtil.
@@ -140,6 +146,12 @@ public class TaskHeartbeatHandler extends AbstractService {
 
   public void unregister(TaskAttemptId attemptID) {
     runningAttempts.remove(attemptID);
+    recentlyUnregisteredAttempts.put(attemptID,
+        new ReportTime(clock.getTime()));
+  }
+
+  public boolean hasRecentlyUnregistered(TaskAttemptId attemptID) {
+    return recentlyUnregisteredAttempts.containsKey(attemptID);
   }
 
   private class PingChecker implements Runnable {
@@ -147,27 +159,9 @@ public class TaskHeartbeatHandler extends AbstractService {
     @Override
     public void run() {
       while (!stopped && !Thread.currentThread().isInterrupted()) {
-        Iterator<Map.Entry<TaskAttemptId, ReportTime>> iterator =
-            runningAttempts.entrySet().iterator();
-
-        // avoid calculating current time everytime in loop
         long currentTime = clock.getTime();
-
-        while (iterator.hasNext()) {
-          Map.Entry<TaskAttemptId, ReportTime> entry = iterator.next();
-          boolean taskTimedOut = (taskTimeOut > 0) &&
-              (currentTime > (entry.getValue().getLastProgress() + taskTimeOut));
-           
-          if(taskTimedOut) {
-            // task is lost, remove from the list and raise lost event
-            iterator.remove();
-            eventHandler.handle(new TaskAttemptDiagnosticsUpdateEvent(entry
-                .getKey(), "AttemptID:" + entry.getKey().toString()
-                + " Timed out after " + taskTimeOut / 1000 + " secs"));
-            eventHandler.handle(new TaskAttemptEvent(entry.getKey(),
-                TaskAttemptEventType.TA_TIMED_OUT));
-          }
-        }
+        checkRunning(currentTime);
+        checkRecentlyUnregistered(currentTime);
         try {
           Thread.sleep(taskTimeOutCheckInterval);
         } catch (InterruptedException e) {
@@ -176,6 +170,39 @@ public class TaskHeartbeatHandler extends AbstractService {
         }
       }
     }
+
+    private void checkRunning(long currentTime) {
+      Iterator<Map.Entry<TaskAttemptId, ReportTime>> iterator =
+          runningAttempts.entrySet().iterator();
+
+      while (iterator.hasNext()) {
+        Map.Entry<TaskAttemptId, ReportTime> entry = iterator.next();
+        boolean taskTimedOut = (taskTimeOut > 0) &&
+            (currentTime > (entry.getValue().getLastProgress() + taskTimeOut));
+
+        if(taskTimedOut) {
+          // task is lost, remove from the list and raise lost event
+          iterator.remove();
+          eventHandler.handle(new TaskAttemptDiagnosticsUpdateEvent(entry
+              .getKey(), "AttemptID:" + entry.getKey().toString()
+              + " Timed out after " + taskTimeOut / 1000 + " secs"));
+          eventHandler.handle(new TaskAttemptEvent(entry.getKey(),
+              TaskAttemptEventType.TA_TIMED_OUT));
+        }
+      }
+    }
+
+    private void checkRecentlyUnregistered(long currentTime) {
+      Iterator<ReportTime> iterator =
+          recentlyUnregisteredAttempts.values().iterator();
+      while (iterator.hasNext()) {
+        ReportTime unregisteredTime = iterator.next();
+        if (currentTime >
+            unregisteredTime.getLastProgress() + unregisterTimeOut) {
+          iterator.remove();
+        }
+      }
+    }
   }
 
   @VisibleForTesting

http://git-wip-us.apache.org/repos/asf/hadoop/blob/02836d32/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/test/java/org/apache/hadoop/mapred/TestTaskAttemptListenerImpl.java
----------------------------------------------------------------------
diff --git a/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/test/java/org/apache/hadoop/mapred/TestTaskAttemptListenerImpl.java
b/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/test/java/org/apache/hadoop/mapred/TestTaskAttemptListenerImpl.java
index da7421b..068ebfa 100644
--- a/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/test/java/org/apache/hadoop/mapred/TestTaskAttemptListenerImpl.java
+++ b/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/test/java/org/apache/hadoop/mapred/TestTaskAttemptListenerImpl.java
@@ -17,6 +17,7 @@
 */
 package org.apache.hadoop.mapred;
 
+import com.google.common.base.Supplier;
 import org.apache.hadoop.mapred.Counters.Counter;
 import org.apache.hadoop.mapreduce.checkpoint.EnumCounter;
 
@@ -51,11 +52,13 @@ import org.apache.hadoop.mapreduce.v2.app.rm.preemption.AMPreemptionPolicy;
 import org.apache.hadoop.mapreduce.v2.app.rm.preemption.CheckpointAMPreemptionPolicy;
 import org.apache.hadoop.mapreduce.v2.app.rm.RMHeartbeatHandler;
 import org.apache.hadoop.mapreduce.v2.util.MRBuilderUtils;
+import org.apache.hadoop.test.GenericTestUtils;
 import org.apache.hadoop.yarn.event.Dispatcher;
 import org.apache.hadoop.yarn.event.Event;
 import org.apache.hadoop.yarn.event.EventHandler;
 import org.apache.hadoop.yarn.factories.RecordFactory;
 import org.apache.hadoop.yarn.factory.providers.RecordFactoryProvider;
+import org.apache.hadoop.yarn.util.ControlledClock;
 import org.apache.hadoop.yarn.util.SystemClock;
 import org.junit.After;
 import org.junit.Test;
@@ -488,14 +491,57 @@ public class TestTaskAttemptListenerImpl {
   }
 
   @Test
-  public void testStatusUpdateFromUnregisteredTask()
-      throws IOException, InterruptedException{
+  public void testStatusUpdateFromUnregisteredTask() throws Exception {
     configureMocks();
-    startListener(false);
+    ControlledClock clock = new ControlledClock();
+    clock.setTime(0);
+    doReturn(clock).when(appCtx).getClock();
+
+    final TaskAttemptListenerImpl tal = new TaskAttemptListenerImpl(appCtx,
+        secret, rmHeartbeatHandler, policy) {
+      @Override
+      protected void startRpcServer() {
+        // Empty
+      }
+      @Override
+      protected void stopRpcServer() {
+        // Empty
+      }
+    };
 
-    AMFeedback feedback = listener.statusUpdate(attemptID, firstReduceStatus);
+    Configuration conf = new Configuration();
+    conf.setLong(MRJobConfig.TASK_TIMEOUT_CHECK_INTERVAL_MS, 1);
+    tal.init(conf);
+    tal.start();
 
+    AMFeedback feedback = tal.statusUpdate(attemptID, firstReduceStatus);
     assertFalse(feedback.getTaskFound());
+    tal.registerPendingTask(task, wid);
+    tal.registerLaunchedTask(attemptId, wid);
+    feedback = tal.statusUpdate(attemptID, firstReduceStatus);
+    assertTrue(feedback.getTaskFound());
+
+    // verify attempt is still reported as found if recently unregistered
+    tal.unregister(attemptId, wid);
+    feedback = tal.statusUpdate(attemptID, firstReduceStatus);
+    assertTrue(feedback.getTaskFound());
+
+    // verify attempt is not found if not recently unregistered
+    long unregisterTimeout = conf.getLong(MRJobConfig.TASK_EXIT_TIMEOUT,
+        MRJobConfig.TASK_EXIT_TIMEOUT_DEFAULT);
+    clock.setTime(unregisterTimeout + 1);
+    GenericTestUtils.waitFor(new Supplier<Boolean>() {
+      @Override
+      public Boolean get() {
+        try {
+          AMFeedback response =
+              tal.statusUpdate(attemptID, firstReduceStatus);
+          return !response.getTaskFound();
+        } catch (Exception e) {
+          throw new RuntimeException("status update failed", e);
+        }
+      }
+    }, 10, 10000);
   }
 
   private void configureMocks() {

http://git-wip-us.apache.org/repos/asf/hadoop/blob/02836d32/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/test/java/org/apache/hadoop/mapreduce/v2/app/TestTaskHeartbeatHandler.java
----------------------------------------------------------------------
diff --git a/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/test/java/org/apache/hadoop/mapreduce/v2/app/TestTaskHeartbeatHandler.java
b/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/test/java/org/apache/hadoop/mapreduce/v2/app/TestTaskHeartbeatHandler.java
index 2623849..5d86479 100644
--- a/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/test/java/org/apache/hadoop/mapreduce/v2/app/TestTaskHeartbeatHandler.java
+++ b/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-app/src/test/java/org/apache/hadoop/mapreduce/v2/app/TestTaskHeartbeatHandler.java
@@ -23,6 +23,7 @@ import static org.mockito.Mockito.mock;
 import static org.mockito.Mockito.times;
 import static org.mockito.Mockito.verify;
 
+import com.google.common.base.Supplier;
 import org.apache.hadoop.conf.Configuration;
 import org.apache.hadoop.mapreduce.MRJobConfig;
 import org.apache.hadoop.mapreduce.v2.api.records.JobId;
@@ -30,10 +31,12 @@ import org.apache.hadoop.mapreduce.v2.api.records.TaskAttemptId;
 import org.apache.hadoop.mapreduce.v2.api.records.TaskId;
 import org.apache.hadoop.mapreduce.v2.api.records.TaskType;
 import org.apache.hadoop.mapreduce.v2.util.MRBuilderUtils;
+import org.apache.hadoop.test.GenericTestUtils;
 import org.apache.hadoop.yarn.api.records.ApplicationId;
 import org.apache.hadoop.yarn.event.Event;
 import org.apache.hadoop.yarn.event.EventHandler;
 import org.apache.hadoop.yarn.util.Clock;
+import org.apache.hadoop.yarn.util.ControlledClock;
 import org.apache.hadoop.yarn.util.SystemClock;
 import org.junit.Assert;
 import org.junit.Test;
@@ -105,6 +108,41 @@ public class TestTaskHeartbeatHandler {
     verifyTaskTimeoutConfig(conf, expectedTimeout);
   }
 
+  @Test
+  public void testTaskUnregistered() throws Exception {
+    EventHandler mockHandler = mock(EventHandler.class);
+    ControlledClock clock = new ControlledClock();
+    clock.setTime(0);
+    final TaskHeartbeatHandler hb =
+        new TaskHeartbeatHandler(mockHandler, clock, 1);
+    Configuration conf = new Configuration();
+    conf.setInt(MRJobConfig.TASK_TIMEOUT_CHECK_INTERVAL_MS, 1);
+    hb.init(conf);
+    hb.start();
+    try {
+      ApplicationId appId = ApplicationId.newInstance(0l, 5);
+      JobId jobId = MRBuilderUtils.newJobId(appId, 4);
+      TaskId tid = MRBuilderUtils.newTaskId(jobId, 3, TaskType.MAP);
+      final TaskAttemptId taid = MRBuilderUtils.newTaskAttemptId(tid, 2);
+      Assert.assertFalse(hb.hasRecentlyUnregistered(taid));
+      hb.register(taid);
+      Assert.assertFalse(hb.hasRecentlyUnregistered(taid));
+      hb.unregister(taid);
+      Assert.assertTrue(hb.hasRecentlyUnregistered(taid));
+      long unregisterTimeout = conf.getLong(MRJobConfig.TASK_EXIT_TIMEOUT,
+          MRJobConfig.TASK_EXIT_TIMEOUT_DEFAULT);
+      clock.setTime(unregisterTimeout + 1);
+      GenericTestUtils.waitFor(new Supplier<Boolean>() {
+        @Override
+        public Boolean get() {
+          return !hb.hasRecentlyUnregistered(taid);
+        }
+      }, 10, 10000);
+    } finally {
+      hb.stop();
+    }
+  }
+
   /**
    * Test if task timeout is set properly in response to the configuration of
    * the task progress report interval.


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