Well, maybe my giraph build did not build correctly because when I run

2014-11-19 02:04:21,764 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:main(421)) - Starting GitaphAM 
2014-11-19 02:04:23,137 WARN  [main] util.NativeCodeLoader (NativeCodeLoader.java:<clinit>(62)) - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
2014-11-19 02:04:25,548 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:<init>(168)) - GiraphAM  for ContainerId container_1416359131664_0002_01_000001 ApplicationAttemptId appattempt_1416359131664_0002_000001
2014-11-19 02:04:25,890 INFO  [main] client.RMProxy (RMProxy.java:createRMProxy(92)) - Connecting to ResourceManager at localhost/127.0.0.1:8030
2014-11-19 02:04:25,924 INFO  [main] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:serviceInit(107)) - Upper bound of the thread pool size is 500
2014-11-19 02:04:25,925 INFO  [main] impl.ContainerManagementProtocolProxy (ContainerManagementProtocolProxy.java:<init>(78)) - yarn.client.max-nodemanagers-proxies : 500
2014-11-19 02:04:26,309 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:setupContainerAskForRM(279)) - Requested container ask: Capability[<memory:3000, vCores:0>]Priority[10]
2014-11-19 02:04:26,577 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:setupContainerAskForRM(279)) - Requested container ask: Capability[<memory:3000, vCores:0>]Priority[10]
2014-11-19 02:04:26,577 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:run(185)) - Wait to finish ..
2014-11-19 02:04:28,612 INFO  [AMRM Heartbeater thread] impl.AMRMClientImpl (AMRMClientImpl.java:populateNMTokens(299)) - Received new token for : roosevelt:58195
2014-11-19 02:04:28,614 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(605)) - Got response from RM for container ask, allocatedCnt=1
2014-11-19 02:04:28,614 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(608)) - Total allocated # of container so far : 1 allocated out of 2 required.
2014-11-19 02:04:28,614 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:startContainerLaunchingThreads(359)) - Launching command on a new container., containerId=container_1416359131664_0002_01_000002, containerNode=roosevelt:58195, containerNodeURI=roosevelt:8042, containerResourceMemory=3072
2014-11-19 02:04:28,615 INFO  [pool-4-thread-1] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(492)) - Setting up container launch container for containerid=container_1416359131664_0002_01_000002
2014-11-19 02:04:28,629 INFO  [pool-4-thread-1] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(498)) - Conatain launch Commands :java -Xmx3000M -Xms3000M -cp .:${CLASSPATH} org.apache.giraph.yarn.GiraphYarnTask 1416359131664 2 2 1 1><LOG_DIR>/task-2-stdout.log 2><LOG_DIR>/task-2-stderr.log 
2014-11-19 02:04:28,630 INFO  [pool-4-thread-1] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(518)) - Setting username in ContainerLaunchContext to: hduser
2014-11-19 02:04:29,149 INFO  [pool-4-thread-1] yarn.YarnUtils (YarnUtils.java:addFsResourcesToMap(72)) - Adding giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar to LocalResources for export.to hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0002/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
2014-11-19 02:04:29,188 INFO  [pool-4-thread-1] yarn.YarnUtils (YarnUtils.java:addFileToResourceMap(160)) - Registered file in LocalResources :: hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0002/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
2014-11-19 02:04:29,188 WARN  [pool-4-thread-1] yarn.YarnUtils (YarnUtils.java:addFsResourcesToMap(81)) - Job jars (-yj option) didn't include giraph-core.
2014-11-19 02:04:29,189 INFO  [pool-4-thread-1] yarn.YarnUtils (YarnUtils.java:addFileToResourceMap(160)) - Registered file in LocalResources :: hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0002/giraph-conf.xml
2014-11-19 02:04:29,201 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #0] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing Event EventType: START_CONTAINER for Container container_1416359131664_0002_01_000002
2014-11-19 02:04:29,202 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #0] impl.ContainerManagementProtocolProxy (ContainerManagementProtocolProxy.java:newProxy(212)) - Opening proxy : roosevelt:58195
2014-11-19 02:04:29,257 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #1] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing Event EventType: QUERY_CONTAINER for Container container_1416359131664_0002_01_000002
2014-11-19 02:04:29,618 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(605)) - Got response from RM for container ask, allocatedCnt=1
2014-11-19 02:04:29,618 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(608)) - Total allocated # of container so far : 2 allocated out of 2 required.
2014-11-19 02:04:29,618 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:startContainerLaunchingThreads(359)) - Launching command on a new container., containerId=container_1416359131664_0002_01_000003, containerNode=roosevelt:58195, containerNodeURI=roosevelt:8042, containerResourceMemory=3072
2014-11-19 02:04:29,619 INFO  [pool-4-thread-2] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(492)) - Setting up container launch container for containerid=container_1416359131664_0002_01_000003
2014-11-19 02:04:29,619 INFO  [pool-4-thread-2] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(498)) - Conatain launch Commands :java -Xmx3000M -Xms3000M -cp .:${CLASSPATH} org.apache.giraph.yarn.GiraphYarnTask 1416359131664 2 3 1 1><LOG_DIR>/task-3-stdout.log 2><LOG_DIR>/task-3-stderr.log 
2014-11-19 02:04:29,619 INFO  [pool-4-thread-2] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(518)) - Setting username in ContainerLaunchContext to: hduser
2014-11-19 02:04:29,620 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #2] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing Event EventType: START_CONTAINER for Container container_1416359131664_0002_01_000003
2014-11-19 02:04:29,623 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #3] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing Event EventType: QUERY_CONTAINER for Container container_1416359131664_0002_01_000003
2014-11-19 02:04:30,620 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersCompleted(571)) - Got response from RM for container ask, completedCnt=2
2014-11-19 02:04:30,620 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersCompleted(574)) - Got container status for containerID=container_1416359131664_0002_01_000002, state=COMPLETE, exitStatus=1, diagnostics=Exception from container-launch: ExitCodeException exitCode=1: 
ExitCodeException exitCode=1: 
	at org.apache.hadoop.util.Shell.runCommand(Shell.java:538)
	at org.apache.hadoop.util.Shell.run(Shell.java:455)
	at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:702)
	at org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor.launchContainer(DefaultContainerExecutor.java:195)
	at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:300)
	at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:81)
	at java.util.concurrent.FutureTask.run(FutureTask.java:262)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:745)


Container exited with a non-zero exit code 1

2014-11-19 02:04:30,620 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersCompleted(574)) - Got container status for containerID=container_1416359131664_0002_01_000003, state=COMPLETE, exitStatus=1, diagnostics=Exception from container-launch: ExitCodeException exitCode=1: 
ExitCodeException exitCode=1: 
	at org.apache.hadoop.util.Shell.runCommand(Shell.java:538)
	at org.apache.hadoop.util.Shell.run(Shell.java:455)
	at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:702)
	at org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor.launchContainer(DefaultContainerExecutor.java:195)
	at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:300)
	at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:81)
	at java.util.concurrent.FutureTask.run(FutureTask.java:262)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:745)


Container exited with a non-zero exit code 1

2014-11-19 02:04:30,620 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersCompleted(594)) - All container compeleted. done = true
2014-11-19 02:04:30,791 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:run(194)) - Done true
2014-11-19 02:04:30,791 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:run(198)) - Forcefully terminating executors with done =:true
2014-11-19 02:04:30,791 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:finish(212)) - Application completed. Stopping running containers
2014-11-19 02:04:30,803 INFO  [main] impl.ContainerManagementProtocolProxy (ContainerManagementProtocolProxy.java:mayBeCloseProxy(145)) - Closing proxy : roosevelt:58195
2014-11-19 02:04:30,803 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:finish(217)) - Application completed. Signalling finish to RM
2014-11-19 02:04:30,815 INFO  [main] impl.AMRMClientImpl (AMRMClientImpl.java:unregisterApplicationMaster(321)) - Waiting for application to be successfully unregistered.
2014-11-19 02:04:30,923 INFO  [AMRM Callback Handler Thread] impl.AMRMClientAsyncImpl (AMRMClientAsyncImpl.java:run(277)) - Interrupted while waiting for queue
java.lang.InterruptedException
	at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.reportInterruptAfterWait(AbstractQueuedSynchronizer.java:2017)
	at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2052)
	at java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442)
	at org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl$CallbackHandlerThread.run(AMRMClientAsyncImpl.java:275)
2014-11-19 02:04:30,944 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:main(445)) - Giraph Application Master failed. exiting
In a moment, I will paste all the logs I can find.

On Sun, Nov 23, 2014 at 1:11 AM, Tripti Singh <tripti@yahoo-inc.com> wrote:
Sorry, the e-mail was sent without me being able to complete it.
The issue I was facing was due to a Giraph’s hard coded dependency on a task with id 0. This task is the designated Master responsible for creating a zookeeperServerList.
These task ids are assigned using ContainerId as input and with the assumption that we will be assigned containers starting with id of 2 (1 for Application Master)
Following is the comment available in Giraph Yarn class

 /**

   * Utility to create a TaskAttemptId we can feed to our fake Mapper#Context.

   *

   * NOTE: ContainerId will serve as MR TaskID for Giraph tasks.

   * YARN container 1 is always AppMaster, so the least container id we will

   * ever get from YARN for a Giraph task is container id 2. Giraph on MapReduce

   * tasks must start at index 0. So we SUBTRACT TWO from each container id.

   *

   * @param args the command line args, fed to us by GiraphApplicationMaster.

   * @return the TaskAttemptId object, populated with YARN job data.

   */


Now, my problem was that in our cluster, this guarantee was not met and at times, I was not assigned the Container with id of 2 (And container ids are also not assigned in increasing order).

Due to this, the Zookeeper was not starting in many workflow runs.

The fix I did, was to get rid of this issue.



Thanks,
Tripti
From: Tripti Singh <tripti@yahoo-inc.com>
Reply-To: "user@giraph.apache.org" <user@giraph.apache.org>
Date: Sunday, November 23, 2014 at 12:23 PM

To: "user@giraph.apache.org" <user@giraph.apache.org>
Subject: Re: Help with Giraph on Yarn

Hi Das,
Could u try what Alessandro is suggesting. Giraph-example jar has all the classes required..
Also, you have shared only AM logs. Can u also add the worker logs?
From a quick look at the AM, I’m not sure if this is the same problem that I faced.

Thanks,
Tripti
From: Alessandro Negro <alenegro81@yahoo.it>
Reply-To: "user@giraph.apache.org" <user@giraph.apache.org>
Date: Sunday, November 23, 2014 at 5:10 AM
To: "user@giraph.apache.org" <user@giraph.apache.org>
Subject: Re: Help with Giraph on Yarn

HI Das,
what about the hadoop logs? Have a look there and let me know.
In the meantime you can remove redundant jars from yarn jars (exampe contains all jars needed): 

yarnjars=giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar

Should be enough

Alessandro.

Il giorno 23/nov/2014, alle ore 00:16, D Adams <dadamszx@gmail.com> ha scritto:

Hi Alessandro,
     Do you run tyarn that way because your hadoop or giraph file permissions are chowned by a user named yarn?

I have made changes as suggested on http://mail-archives.apache.org/mod_mbox/giraph-user/201408.mbox/%3C53F4C689.5060101@web.de%3E

And although things do look more hopeful, I still get an infinite loop. I run with as script which includes:

user_dir=/user/hduser
jar=giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
runner=org.apache.giraph.GiraphRunner
computation=org.apache.giraph.examples.SimpleShortestPathsComputation
informat=org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat
outformat=org.apache.giraph.io.formats.IdWithValueTextOutputFormat
yarnjars=giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar,giraph-core-1.1.0-SNAPSHOT.jar,giraph-1.1.0-hadoop-2.5.1.jar

bin/hdfs dfs -rm -r $user_dir/output/shortestpaths
bin/yarn jar $GIRAPH_HOME/$jar $runner -Dgiraph.yarn.task.heap.mb=3000 $computation -vif $informat -vip $user_dir/input/tiny_graph.txt -vof $outformat -op $user_dir/output/shortestpaths -w 1 -yj $yarnjars

And the resulting stdout:
hduser@Roosevelt:/usr/local/hadoop$ ./hduser_jobs.sh
Running hduser script ...
14/11/18 19:05:47 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
rm: `/user/hduser/output/shortestpaths': No such file or directory
14/11/18 19:06:13 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
14/11/18 19:06:15 INFO utils.ConfigurationUtils: No edge input format specified. Ensure your InputFormat does not require one.
14/11/18 19:06:15 INFO utils.ConfigurationUtils: No edge output format specified. Ensure your OutputFormat does not require one.
14/11/18 19:06:16 INFO yarn.GiraphYarnClient: Final output path is: hdfs://localhost:9000/user/hduser/output/shortestpaths
14/11/18 19:06:16 INFO yarn.GiraphYarnClient: Running Client
14/11/18 19:06:16 INFO client.RMProxy: Connecting to ResourceManager at localhost/127.0.0.1:8050
14/11/18 19:06:17 INFO yarn.GiraphYarnClient: Got node report from ASM for, nodeId=roosevelt:58195, nodeAddress roosevelt:8042, nodeRackName /default-rack, nodeNumContainers 0
14/11/18 19:06:17 INFO yarn.GiraphYarnClient: Obtained new Application ID: application_1416359131664_0001
14/11/18 19:06:17 INFO Configuration.deprecation: mapred.job.id is deprecated. Instead, use mapreduce.job.id
14/11/18 19:06:17 INFO yarn.GiraphYarnClient: Set the environment for the application master
14/11/18 19:06:17 INFO yarn.GiraphYarnClient: Environment for AM :{CLASSPATH=${CLASSPATH}:./*:$HADOOP_CONF_DIR:$HADOOP_COMMON_HOME/share/hadoop/common/*:$HADOOP_COMMON_HOME/share/hadoop/common/lib/*:$HADOOP_HDFS_HOME/share/hadoop/hdfs/*:$HADOOP_HDFS_HOME/share/hadoop/hdfs/lib/*:$HADOOP_YARN_HOME/share/hadoop/yarn/*:$HADOOP_YARN_HOME/share/hadoop/yarn/lib/*:$HADOOP_MAPRED_HOME/share/hadoop/mapreduce/*:$HADOOP_MAPRED_HOME/share/hadoop/mapreduce/lib/*}
14/11/18 19:06:17 INFO yarn.GiraphYarnClient: buildLocalResourceMap ....
14/11/18 19:06:19 INFO yarn.YarnUtils: Registered file in LocalResources :: hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-conf.xml
14/11/18 19:06:19 INFO yarn.GiraphYarnClient: LIB JARS :giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar,giraph-core-1.1.0-SNAPSHOT.jar,giraph-1.1.0-hadoop-2.5.1.jar
14/11/18 19:06:19 INFO yarn.YarnUtils: Class path name .
14/11/18 19:06:19 INFO yarn.YarnUtils: base path checking .
14/11/18 19:06:19 INFO yarn.YarnUtils: Class path name /usr/local/hadoop
14/11/18 19:06:19 INFO yarn.YarnUtils: base path checking /usr/local/hadoop
14/11/18 19:06:19 INFO yarn.YarnUtils: Class path name null
14/11/18 19:06:19 INFO yarn.YarnUtils: base path checking null
14/11/18 19:06:19 INFO yarn.GiraphYarnClient: Made local resource for :/usr/local/hadoop/share/myLib/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar to hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
14/11/18 19:06:23 INFO yarn.YarnUtils: Registered file in LocalResources :: hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
14/11/18 19:06:23 INFO yarn.GiraphYarnClient: ApplicationSumbissionContext for GiraphApplicationMaster launch container is populated.
14/11/18 19:06:23 INFO yarn.GiraphYarnClient: Submitting application to ASM
14/11/18 19:06:23 INFO impl.YarnClientImpl: Submitted application application_1416359131664_0001
14/11/18 19:06:23 INFO yarn.GiraphYarnClient: Got new appId after submission :application_1416359131664_0001
14/11/18 19:06:23 INFO yarn.GiraphYarnClient: GiraphApplicationMaster container request was submitted to ResourceManager for job: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation
14/11/18 19:06:24 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 0.90 secs
14/11/18 19:06:24 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: ACCEPTED, Containers used: 0
14/11/18 19:06:28 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 5.05 secs
14/11/18 19:06:28 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: ACCEPTED, Containers used: 1
14/11/18 19:06:33 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 9.89 secs
14/11/18 19:06:33 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: ACCEPTED, Containers used: 1
14/11/18 19:06:37 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 14.37 secs
14/11/18 19:06:37 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: ACCEPTED, Containers used: 1
14/11/18 19:06:42 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 18.81 secs
14/11/18 19:06:42 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: ACCEPTED, Containers used: 1
14/11/18 19:06:46 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 22.82 secs
14/11/18 19:06:46 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
14/11/18 19:06:50 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 26.83 secs
14/11/18 19:06:50 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
14/11/18 19:06:54 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 30.83 secs
14/11/18 19:06:54 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
14/11/18 19:06:58 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 34.85 secs
14/11/18 19:06:58 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
14/11/18 19:07:02 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 38.85 secs
14/11/18 19:07:02 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
14/11/18 19:07:06 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 42.86 secs
14/11/18 19:07:06 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
14/11/18 19:07:10 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 46.88 secs
14/11/18 19:07:10 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
14/11/18 19:07:14 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 50.89 secs
14/11/18 19:07:14 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
14/11/18 19:07:18 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 54.90 secs

Once yarn hits the RUNNING state, it enters an endless loop. It seems it is caused by the following:


2014-11-18 19:06:37,382 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:main(421)) - Starting GitaphAM 
2014-11-18 19:06:39,214 WARN  [main] util.NativeCodeLoader (NativeCodeLoader.java:<clinit>(62)) - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
2014-11-18 19:06:41,438 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:<init>(168)) - GiraphAM  for ContainerId container_1416359131664_0001_01_000001 ApplicationAttemptId appattempt_1416359131664_0001_000001
2014-11-18 19:06:41,497 INFO  [main] client.RMProxy (RMProxy.java:createRMProxy(92)) - Connecting to ResourceManager at localhost/127.0.0.1:8030
2014-11-18 19:06:41,581 INFO  [main] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:serviceInit(107)) - Upper bound of the thread pool size is 500
2014-11-18 19:06:41,583 INFO  [main] impl.ContainerManagementProtocolProxy (ContainerManagementProtocolProxy.java:<init>(78)) - yarn.client.max-nodemanagers-proxies : 500
2014-11-18 19:06:42,355 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:setupContainerAskForRM(279)) - Requested container ask: Capability[<memory:3000, vCores:0>]Priority[10]
2014-11-18 19:06:42,370 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:setupContainerAskForRM(279)) - Requested container ask: Capability[<memory:3000, vCores:0>]Priority[10]
2014-11-18 19:06:42,618 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:run(185)) - Wait to finish ..
2014-11-18 19:06:44,673 INFO  [AMRM Heartbeater thread] impl.AMRMClientImpl (AMRMClientImpl.java:populateNMTokens(299)) - Received new token for : roosevelt:58195
2014-11-18 19:06:44,677 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(605)) - Got response from RM for container ask, allocatedCnt=1
2014-11-18 19:06:44,677 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(608)) - Total allocated # of container so far : 1 allocated out of 2 required.
2014-11-18 19:06:44,678 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:startContainerLaunchingThreads(359)) - Launching command on a new container., containerId=container_1416359131664_0001_01_000002, containerNode=roosevelt:58195, containerNodeURI=roosevelt:8042, containerResourceMemory=3072
2014-11-18 19:06:44,679 INFO  [pool-4-thread-1] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(492)) - Setting up container launch container for containerid=container_1416359131664_0001_01_000002
2014-11-18 19:06:44,694 INFO  [pool-4-thread-1] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(498)) - Conatain launch Commands :java -Xmx3000M -Xms3000M -cp .:${CLASSPATH} org.apache.giraph.yarn.GiraphYarnTask 1416359131664 1 2 1 1><LOG_DIR>/task-2-stdout.log 2><LOG_DIR>/task-2-stderr.log 
2014-11-18 19:06:44,694 INFO  [pool-4-thread-1] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(518)) - Setting username in ContainerLaunchContext to: hduser
2014-11-18 19:06:45,191 INFO  [pool-4-thread-1] yarn.YarnUtils (YarnUtils.java:addFsResourcesToMap(72)) - Adding giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar to LocalResources for export.to hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
2014-11-18 19:06:45,228 INFO  [pool-4-thread-1] yarn.YarnUtils (YarnUtils.java:addFileToResourceMap(160)) - Registered file in LocalResources :: hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
2014-11-18 19:06:45,228 INFO  [pool-4-thread-1] yarn.YarnUtils (YarnUtils.java:addFsResourcesToMap(72)) - Adding giraph-core-1.1.0-SNAPSHOT.jar to LocalResources for export.to hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-core-1.1.0-SNAPSHOT.jar
2014-11-18 19:06:45,683 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(605)) - Got response from RM for container ask, allocatedCnt=1
2014-11-18 19:06:45,683 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(608)) - Total allocated # of container so far : 2 allocated out of 2 required.
2014-11-18 19:06:45,683 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:startContainerLaunchingThreads(359)) - Launching command on a new container., containerId=container_1416359131664_0001_01_000003, containerNode=roosevelt:58195, containerNodeURI=roosevelt:8042, containerResourceMemory=3072
2014-11-18 19:06:45,684 INFO  [pool-4-thread-3] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(492)) - Setting up container launch container for containerid=container_1416359131664_0001_01_000003
2014-11-18 19:06:45,684 INFO  [pool-4-thread-3] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(498)) - Conatain launch Commands :java -Xmx3000M -Xms3000M -cp .:${CLASSPATH} org.apache.giraph.yarn.GiraphYarnTask 1416359131664 1 3 1 1><LOG_DIR>/task-3-stdout.log 2><LOG_DIR>/task-3-stderr.log 
2014-11-18 19:06:45,684 INFO  [pool-4-thread-3] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(518)) - Setting username in ContainerLaunchContext to: hduser
2014-11-18 19:06:45,697 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #0] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing Event EventType: START_CONTAINER for Container container_1416359131664_0001_01_000003
2014-11-18 19:06:45,699 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #0] impl.ContainerManagementProtocolProxy (ContainerManagementProtocolProxy.java:newProxy(212)) - Opening proxy : roosevelt:58195
2014-11-18 19:06:45,761 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #1] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing Event EventType: QUERY_CONTAINER for Container container_1416359131664_0001_01_000003
2014-11-18 19:06:46,687 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersCompleted(571)) - Got response from RM for container ask, completedCnt=1
2014-11-18 19:06:46,688 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersCompleted(574)) - Got container status for containerID=container_1416359131664_0001_01_000003, state=COMPLETE, exitStatus=1, diagnostics=Exception from container-launch: ExitCodeException exitCode=1: 
ExitCodeException exitCode=1: 
	at org.apache.hadoop.util.Shell.runCommand(Shell.java:538)
	at org.apache.hadoop.util.Shell.run(Shell.java:455)
	at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:702)
	at org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor.launchContainer(DefaultContainerExecutor.java:195)
	at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:300)
	at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:81)
	at java.util.concurrent.FutureTask.run(FutureTask.java:262)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:745)


Container exited with a non-zero exit code 1

2014-11-18 19:06:46,688 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersCompleted(596)) - After completion of one conatiner. current status is: completedCount :1 containersToLaunch :2 successfulCount :0 failedCount :1

On Sat, Nov 22, 2014 at 11:42 AM, D Adams <dadamszx@gmail.com> wrote:
I'm sorry, please excuse my ignorance, but, I have no idea where to find my configuration. That is, I have no idea where these lines came from (or what file):

yarn             1029   0,1  1,2  3499572 209560 s001  S    10:29am   0:06.04 /Library/Java/
JavaVirtualMachines/jdk1.7.0_45.jdk/Contents/Home/bin/java -Dproc_resourcemanager -Xmx500m -Dhadoop.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dyarn.log.dir=/opt/yarn/hadoop-2.5.1/logs
...
As far as configuration goes, I'm only really aware of the etc/hadoop/*-env.sh and .xml files and main pom.xml file. Or is the above part of the command you use to run giraph jobs?
I will make changes to hadoop-env.sh file as you suggest and let you know how it works out.

On Fri, Nov 21, 2014 at 6:05 AM, Alessandro Negro <alenegro81@yahoo.it> wrote:
Hi,
I forgot to say that I added also this line: 

export HADOOP_CLASSPATH=$HADOOP_CLASSPATH:$MYLIB


Il giorno 21/nov/2014, alle ore 10:34, Alessandro Negro <alenegro81@yahoo.it> ha scritto:

Hi Das,
this is my configuration of hadoop:

yarn             1029   0,1  1,2  3499572 209560 s001  S    10:29am   0:06.04 /Library/Java/JavaVirtualMachines/jdk1.7.0_45.jdk/Contents/Home/bin/java -Dproc_resourcemanager -Xmx500m -Dhadoop.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dyarn.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dhadoop.log.file=yarn-yarn-resourcemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.log.file=yarn-yarn-resourcemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.home.dir= -Dyarn.id.str=yarn -Dhadoop.root.logger=INFO,RFA -Dyarn.root.logger=INFO,RFA -Djava.library.path=/opt/yarn/hadoop-2.5.1/lib/native -Dyarn.policy.file=hadoop-policy.xml -Dhadoop.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dyarn.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dhadoop.log.file=yarn-yarn-resourcemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.log.file=yarn-yarn-resourcemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.home.dir=/opt/yarn/hadoop-2.5.1 -Dhadoop.home.dir=/opt/yarn/hadoop-2.5.1 -Dhadoop.root.logger=INFO,RFA -Dyarn.root.logger=INFO,RFA -Djava.library.path=/opt/yarn/hadoop-2.5.1/lib/native -classpath /opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/share/hadoop/common/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/common/*:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/*:/opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/*::/opt/yarn/hadoop-2.5.1/share/myLib/*.jar:/Users/ale/extprj/giraph/myGiraph/*.jar:/Users/ale/extprj/giraph/myGiraph/lib/*.jar:/contrib/capacity-scheduler/*.jar:/opt/yarn/hadoop-2.5.1/share/myLib/*.jar:/Users/ale/extprj/giraph/myGiraph/*.jar:/Users/ale/extprj/giraph/myGiraph/lib/*.jar:/contrib/capacity-scheduler/*.jar:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/lib/*:/opt/yarn/hadoop-2.5.1/etc/hadoop/rm-config/log4j.properties org.apache.hadoop.yarn.server.resourcemanager.ResourceManager
yarn             1073   0,1  1,0  3347132 174644 s001  S    10:29am   0:04.77 /Library/Java/JavaVirtualMachines/jdk1.7.0_45.jdk/Contents/Home/bin/java -Dproc_nodemanager -Xmx500m -Dhadoop.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dyarn.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dhadoop.log.file=yarn-yarn-nodemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.log.file=yarn-yarn-nodemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.home.dir= -Dyarn.id.str=yarn -Dhadoop.root.logger=INFO,RFA -Dyarn.root.logger=INFO,RFA -Djava.library.path=/opt/yarn/hadoop-2.5.1/lib/native -Dyarn.policy.file=hadoop-policy.xml -server -Dhadoop.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dyarn.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dhadoop.log.file=yarn-yarn-nodemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.log.file=yarn-yarn-nodemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.home.dir=/opt/yarn/hadoop-2.5.1 -Dhadoop.home.dir=/opt/yarn/hadoop-2.5.1 -Dhadoop.root.logger=INFO,RFA -Dyarn.root.logger=INFO,RFA -Djava.library.path=/opt/yarn/hadoop-2.5.1/lib/native -classpath /opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/share/hadoop/common/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/common/*:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/*:/opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/*::/opt/yarn/hadoop-2.5.1/share/myLib/*.jar:/Users/ale/extprj/giraph/myGiraph/*.jar:/Users/ale/extprj/giraph/myGiraph/lib/*.jar:/contrib/capacity-scheduler/*.jar:/opt/yarn/hadoop-2.5.1/share/myLib/*.jar:/Users/ale/extprj/giraph/myGiraph/*.jar:/Users/ale/extprj/giraph/myGiraph/lib/*.jar:/contrib/capacity-scheduler/*.jar:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/lib/*:/opt/yarn/hadoop-2.5.1/etc/hadoop/nm-config/log4j.properties org.apache.hadoop.yarn.server.nodemanager.NodeManager

So I run it as yarn user in this way:

sudo -u yarn ….

Moreover I have just notice that I added the following lines into the hadoop-env.sh

hadoop-env.sh:export MYLIB=/opt/yarn/hadoop-2.5.1/share/myLib/*.jar:/Users/ale/extprj/giraph/myGiraph/*.jar:/Users/ale/extprj/giraph/myGiraph/lib/*.jar

Accordingly to this other thread:


Let me know,
Alessandro


Il giorno 20/nov/2014, alle ore 23:51, D Adams <dadamszx@gmail.com> ha scritto:

--f46d044283ecf837440508522939
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: quoted-printable

Ok, in the following, I use bin/yarn. Doesn't seem like much has changed:

hduser@Roosevelt:/usr/local/hadoop$ ./hduser_jobs.sh
Running hduser script ...
bin/yarn jar
/usr/local/giraph/giraph-examples/target/giraph-examples-1.1.0-SNAPSHOT-for=
-hadoop-2.5.1-jar-with-dependencies.jar
org.apache.giraph.GiraphRunner
org.apache.giraph.examples.SimpleShortestPathsComputation -vif
org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat
-vip /user/hduser/input/tiny_graph.txt -vof
org.apache.giraph.io.formats.IdWithValueTextOutputFormat -op
/user/hduser/output/shortestpaths -w 1 -yj
giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar
14/11/18 05:36:05 WARN util.NativeCodeLoader: Unable to load native-hadoop
library for your platform... using builtin-java classes where applicable
14/11/18 05:36:08 INFO utils.ConfigurationUtils: No edge input format
specified. Ensure your InputFormat does not require one.
14/11/18 05:36:08 INFO utils.ConfigurationUtils: No edge output format
specified. Ensure your OutputFormat does not require one.
14/11/18 05:36:08 INFO yarn.GiraphYarnClient: Final output path is:
hdfs://localhost:9000/user/hduser/output/shortestpaths
14/11/18 05:36:08 INFO yarn.GiraphYarnClient: Running Client
14/11/18 05:36:08 INFO client.RMProxy: Connecting to ResourceManager at
localhost/127.0.0.1:8050
14/11/18 05:36:09 INFO yarn.GiraphYarnClient: Got node report from ASM for,
nodeId=3Droosevelt:60486, nodeAddress roosevelt:8042, nodeRackName
/default-rack, nodeNumContainers 0
14/11/18 05:36:09 INFO yarn.GiraphYarnClient: Defaulting per-task heap size
to 1024MB.
14/11/18 05:36:09 INFO yarn.GiraphYarnClient: Obtained new Application ID:
application_1416310496070_0001
14/11/18 05:36:09 INFO Configuration.deprecation: mapred.job.id is
deprecated. Instead, use mapreduce.job.id
14/11/18 05:36:09 INFO yarn.GiraphYarnClient: Set the environment for the
application master
14/11/18 05:36:09 INFO yarn.GiraphYarnClient: Environment for AM
:{CLASSPATH=3D${CLASSPATH}:./*:$HADOOP_CONF_DIR:$HADOOP_COMMON_HOME/share/h=
adoop/common/*:$HADOOP_COMMON_HOME/share/hadoop/common/lib/*:$HADOOP_HDFS_H=
OME/share/hadoop/hdfs/*:$HADOOP_HDFS_HOME/share/hadoop/hdfs/lib/*:$HADOOP_Y=
ARN_HOME/share/hadoop/yarn/*:$HADOOP_YARN_HOME/share/hadoop/yarn/lib/*:$HAD=
OOP_MAPRED_HOME/share/hadoop/mapreduce/*:$HADOOP_MAPRED_HOME/share/hadoop/m=
apreduce/lib/*}
14/11/18 05:36:09 INFO yarn.GiraphYarnClient: buildLocalResourceMap ....
14/11/18 05:36:12 INFO yarn.YarnUtils: Registered file in LocalResources ::
hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
496070_0001/giraph-conf.xml
14/11/18 05:36:12 INFO yarn.GiraphYarnClient: LIB JARS
:giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar
14/11/18 05:36:12 INFO yarn.YarnUtils: Class path name .
14/11/18 05:36:12 INFO yarn.YarnUtils: base path checking .
14/11/18 05:36:12 INFO yarn.GiraphYarnClient: Made local resource for
:/usr/local/hadoop/share/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-ja=
r-with-dependencies.jar
to
hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
496070_0001/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-depend=
encies.jar
14/11/18 05:36:16 INFO yarn.YarnUtils: Registered file in LocalResources ::
hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
496070_0001/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-depend=
encies.jar
14/11/18 05:36:16 INFO yarn.GiraphYarnClient: ApplicationSumbissionContext
for GiraphApplicationMaster launch container is populated.
14/11/18 05:36:16 INFO yarn.GiraphYarnClient: Submitting application to ASM
14/11/18 05:36:16 INFO impl.YarnClientImpl: Submitted application
application_1416310496070_0001
14/11/18 05:36:16 INFO yarn.GiraphYarnClient: Got new appId after
submission :application_1416310496070_0001
14/11/18 05:36:16 INFO yarn.GiraphYarnClient: GiraphApplicationMaster
container request was submitted to ResourceManager for job: Giraph:
org.apache.giraph.examples.SimpleShortestPathsComputation
14/11/18 05:36:17 INFO yarn.GiraphYarnClient: Giraph:
org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 1.01
secs
14/11/18 05:36:17 INFO yarn.GiraphYarnClient:
appattempt_1416310496070_0001_000001, State: ACCEPTED, Containers used: 1
14/11/18 05:36:22 INFO yarn.GiraphYarnClient: Giraph:
org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 5.86
secs
14/11/18 05:36:22 INFO yarn.GiraphYarnClient:
appattempt_1416310496070_0001_000001, State: ACCEPTED, Containers used: 1
14/11/18 05:36:26 INFO yarn.GiraphYarnClient: Giraph:
org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 10.02
secs
14/11/18 05:36:26 INFO yarn.GiraphYarnClient:
appattempt_1416310496070_0001_000001, State: ACCEPTED, Containers used: 1
14/11/18 05:36:30 INFO yarn.GiraphYarnClient: Giraph:
org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 14.39
secs
14/11/18 05:36:30 INFO yarn.GiraphYarnClient:
appattempt_1416310496070_0001_000001, State: ACCEPTED, Containers used: 1
14/11/18 05:36:34 INFO yarn.GiraphYarnClient: Giraph:
org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 18.57
secs
14/11/18 05:36:34 INFO yarn.GiraphYarnClient:
appattempt_1416310496070_0001_000001, State: RUNNING, Containers used: 2

gam_stderr.log

LF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in
[jar:file:/app/hadoop/tmp/nm-local-dir/usercache/hduser/appcache/applicatio=
n_1416310496070_0001/filecache/10/giraph-examples-1.1.0-SNAPSHOT-for-hadoop=
-2.5.1-jar-with-dependencies.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in
[jar:file:/usr/local/hadoop/share/hadoop/common/lib/slf4j-log4j12-1.7.5.jar=
!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explana=
tion.
SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]

gam_stdout.log

2014-11-18 05:36:28,143 INFO  [main] yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:main(421)) - Starting GitaphAM
2014-11-18 05:36:30,404 WARN  [main] util.NativeCodeLoader
(NativeCodeLoader.java:<clinit>(62)) - Unable to load native-hadoop
library for your platform... using builtin-java classes where
applicable
2014-11-18 05:36:32,649 INFO  [main] yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:<init>(168)) - GiraphAM  for ContainerId
container_1416310496070_0001_01_000001 ApplicationAttemptId
appattempt_1416310496070_0001_000001
2014-11-18 05:36:32,852 INFO  [main] client.RMProxy
(RMProxy.java:createRMProxy(92)) - Connecting to ResourceManager at
localhost/127.0.0.1:8030
2014-11-18 05:36:32,888 INFO  [main] impl.NMClientAsyncImpl
(NMClientAsyncImpl.java:serviceInit(107)) - Upper bound of the thread
pool size is 500
2014-11-18 05:36:32,889 INFO  [main]
impl.ContainerManagementProtocolProxy
(ContainerManagementProtocolProxy.java:<init>(78)) -
yarn.client.max-nodemanagers-proxies : 500
2014-11-18 05:36:33,589 INFO  [main] yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:setupContainerAskForRM(279)) - Requested
container ask: Capability[<memory:1024, vCores:0>]Priority[10]
2014-11-18 05:36:33,617 INFO  [main] yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:setupContainerAskForRM(279)) - Requested
container ask: Capability[<memory:1024, vCores:0>]Priority[10]
2014-11-18 05:36:33,617 INFO  [main] yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:run(185)) - Wait to finish ..
2014-11-18 05:36:35,674 INFO  [AMRM Heartbeater thread]
impl.AMRMClientImpl (AMRMClientImpl.java:populateNMTokens(299)) -
Received new token for : roosevelt:60486
2014-11-18 05:36:35,681 INFO  [AMRM Callback Handler Thread]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:onContainersAllocated(605)) - Got
response from RM for container ask, allocatedCnt=3D1
2014-11-18 05:36:35,681 INFO  [AMRM Callback Handler Thread]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:onContainersAllocated(608)) - Total
allocated # of container so far : 1 allocated out of 2 required.
2014-11-18 05:36:35,681 INFO  [AMRM Callback Handler Thread]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:startContainerLaunchingThreads(359)) -
Launching command on a new container.,
containerId=3Dcontainer_1416310496070_0001_01_000002,
containerNode=3Droosevelt:60486, containerNodeURI=3Droosevelt:8042,
containerResourceMemory=3D1024
2014-11-18 05:36:35,688 INFO  [pool-4-thread-1]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:buildContainerLaunchContext(492)) -
Setting up container launch container for
containerid=3Dcontainer_1416310496070_0001_01_000002
2014-11-18 05:36:35,720 INFO  [pool-4-thread-1]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:buildContainerLaunchContext(498)) -
Conatain launch Commands :java -Xmx1024M -Xms1024M -cp .:${CLASSPATH}
org.apache.giraph.yarn.GiraphYarnTask 1416310496070 1 2 1
1><LOG_DIR>/task-2-stdout.log 2><LOG_DIR>/task-2-stderr.log
2014-11-18 05:36:35,721 INFO  [pool-4-thread-1]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:buildContainerLaunchContext(518)) -
Setting username in ContainerLaunchContext to: hduser
2014-11-18 05:36:36,789 INFO  [AMRM Callback Handler Thread]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:onContainersAllocated(605)) - Got
response from RM for container ask, allocatedCnt=3D1
2014-11-18 05:36:36,789 INFO  [AMRM Callback Handler Thread]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:onContainersAllocated(608)) - Total
allocated # of container so far : 2 allocated out of 2 required.
2014-11-18 05:36:36,790 INFO  [AMRM Callback Handler Thread]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:startContainerLaunchingThreads(359)) -
Launching command on a new container.,
containerId=3Dcontainer_1416310496070_0001_01_000003,
containerNode=3Droosevelt:60486, containerNodeURI=3Droosevelt:8042,
containerResourceMemory=3D1024
2014-11-18 05:36:37,227 INFO  [pool-4-thread-2]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:buildContainerLaunchContext(492)) -
Setting up container launch container for
containerid=3Dcontainer_1416310496070_0001_01_000003
2014-11-18 05:36:37,227 INFO  [pool-4-thread-2]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:buildContainerLaunchContext(498)) -
Conatain launch Commands :java -Xmx1024M -Xms1024M -cp .:${CLASSPATH}
org.apache.giraph.yarn.GiraphYarnTask 1416310496070 1 3 1
1><LOG_DIR>/task-3-stdout.log 2><LOG_DIR>/task-3-stderr.log
2014-11-18 05:36:37,227 INFO  [pool-4-thread-2]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:buildContainerLaunchContext(518)) -
Setting username in ContainerLaunchContext to: hduser
2014-11-18 05:36:37,463 INFO  [pool-4-thread-1] yarn.YarnUtils
(YarnUtils.java:addFsResourcesToMap(72)) - Adding
giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar
to LocalResources for export.to
hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
496070_0001/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-depend=
encies.jar
2014-11-18 05:36:37,678 INFO  [pool-4-thread-1] yarn.YarnUtils
(YarnUtils.java:addFileToResourceMap(160)) - Registered file in
LocalResources ::
hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
496070_0001/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-depend=
encies.jar
2014-11-18 05:36:37,678 WARN  [pool-4-thread-1] yarn.YarnUtils
(YarnUtils.java:addFsResourcesToMap(81)) - Job jars (-yj option)
didn't include giraph-core.
2014-11-18 05:36:37,680 INFO  [pool-4-thread-1] yarn.YarnUtils
(YarnUtils.java:addFileToResourceMap(160)) - Registered file in
LocalResources ::
hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
496070_0001/giraph-conf.xml
2014-11-18 05:36:37,694 INFO
[org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #0]
impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing
Event EventType: START_CONTAINER for Container
container_1416310496070_0001_01_000002
2014-11-18 05:36:37,699 INFO
[org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #1]
impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing
Event EventType: START_CONTAINER for Container
container_1416310496070_0001_01_000003
2014-11-18 05:36:37,698 INFO
[org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #0]
impl.ContainerManagementProtocolProxy
(ContainerManagementProtocolProxy.java:newProxy(212)) - Opening proxy
: roosevelt:60486
2014-11-18 05:36:37,761 INFO
[org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #2]
impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing
Event EventType: QUERY_CONTAINER for Container
container_1416310496070_0001_01_000003
2014-11-18 05:36:37,771 INFO
[org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #3]
impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing
Event EventType: QUERY_CONTAINER for Container
container_1416310496070_0001_01_000002



On Thu, Nov 20, 2014 at 1:32 PM, Alessandro Negro <alenegro81@yahoo.it>
wrote:

Hi Das,
I mean as user you run Hadoop yarn resource manager.

Alessandro

Il giorno 20/nov/2014, alle ore 19:22, D Adams <dadamszx@gmail.com> ha
scritto:

Alessandro,
    I'm not sure what you mean, should I create a new user on my system
named 'yarn'? I'm new to both hadoop and giraph, so I'm not sure.

Tripti,
    I'll get those logs as soon as I can.

Thank you both,

V/r
Das
On Nov 20, 2014 3:13 AM, "Alessandro Negro" <alenegro81@yahoo.it> wrote:

Hi Tripti,
I agree that a more detailed error log could be useful.

Thanks,
Alessandro




Il giorno 19/nov/2014, alle ore 15:54, Tripti Singh <tripti@yahoo-inc.co=
m>
ha scritto:

--_000_D092AB9C1CB42triptiyahooinccom_
Content-Type: text/plain; charset=3D"Windows-1252"
Content-Transfer-Encoding: quoted-printable

Hi Alessandro,

I guess u r talking about the documentation on Giraph webpage which
mention=3D
s addition of this new option which is more or less mandatory for yarn
base=3D
d profiles.
When I first ran the Giraph on yarn without the proper =3D96yj option,
there =3D
was no way I could figure out from the Application/Container logs that
this=3D
was the issue.
I think, it=3D92ll be a good idea to have this message in the logs for
easy d=3D
ebugging.

Thanks,
Tripti.


From: Alessandro Negro <alenegro81@yahoo.it<mailto:alenegro81@yahoo.it

Reply-To: "user@giraph.apache.org<mailto:user@giraph.apache.org>"
<user@gir=3D
aph.apache.org<mailto:user@giraph.apache.org>>
Date: Tuesday, November 18, 2014 at 4:31 PM
To: "user@giraph.apache.org<mailto:user@giraph.apache.org>" <
user@giraph.ap=3D
ache.org<mailto:user@giraph.apache.org>>
Subject: Re: Help with Giraph on Yarn

Hi Eli,
no I think that the help message is clear enough, generally when I rea=
d
=3D93=3D
jar=3D94 I always mean absolute path for jar, but this is a my persona=
l
misun=3D
derstanding.

Thanks,
Alessandro


Il giorno 16/nov/2014, alle ore 21:39, Eli Reisman <
apache.mailbox@gmail.co=3D
m<mailto:apache.mailbox@gmail.com>> ha scritto:

Sounds like you got it figured out since last time I checked this list=
,
sor=3D
ry it was a pain. Feel free to drop a JIRA ticket if we can make help
messa=3D
ge etc. for -yj option more clear, there's lots to improve there.

On Sat, Nov 8, 2014 at 7:26 AM, Alessandro Negro <alenegro81@yahoo.it
<mailt=3D
o:alenegro81@yahoo.it>> wrote:
Hi Tripti,
finally I was able to run the test with success. It was an issue of
permiss=3D
ion since I was running as ale not as yarn.
Let me say that now I=3D92m able to run graph examples on Yarn 2.5.1.
This is=3D
the final result:

14/11/08 16:24:00 INFO yarn.GiraphYarnClient: Completed Giraph:
org.apache.=3D
giraph.examples.SimpleShortestPathsComputation: SUCCEEDED, total
running ti=3D
me: 0 minutes, 21 seconds.


Many thanks for your support,
Alessandro

Il giorno 06/nov/2014, alle ore 15:16, Tripti Singh <
tripti@yahoo-inc.com<m=3D
ailto:tripti@yahoo-inc.com>> ha scritto:

I don't know if u have access to this node. But if u do, u could check
if t=3D
he file is indeed there and u have access to it.

Sent from my iPhone

On 06-Nov-2014, at 6:12 pm, "Alessandro Negro" <alenegro81@yahoo.it
<mailto:=3D
alenegro81@yahoo.it>> wrote:

You are right it works, but now I receive the following error:

SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in
[jar:file:/private/tmp/hadoop-yarn/nm-local-dir/use=3D

rcache/ale/appcache/application_1415264041937_0009/filecache/10/giraph-e=
xam=3D

ples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar!/org/slf4=
j/i=3D
mpl/StaticLoggerBinder.class]
SLF4J: Found binding in
[jar:file:/opt/yarn/hadoop-2.5.1/share/hadoop/commo=3D
n/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class=
]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
explana=3D
tion.
SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
2014-11-06 13:15:37.120 java[10158:1803] Unable to load realm info fro=
m
SCD=3D
ynamicStore
Exception in thread "pool-4-thread-1" java.lang.IllegalStateException:
Coul=3D
d not configure the containerlaunch context for GiraphYarnTasks.
at
org.apache.giraph.yarn.GiraphApplicationMaster.getTaskResourceMap(Giraph=
=3D
ApplicationMaster.java:391)
at
org.apache.giraph.yarn.GiraphApplicationMaster.access$500(GiraphApplicat=
=3D
ionMaster.java:78)
at
org.apache.giraph.yarn.GiraphApplicationMaster$LaunchContainerRunnable.b=
=3D
uildContainerLaunchContext(GiraphApplicationMaster.java:522)
at
org.apache.giraph.yarn.GiraphApplicationMaster$LaunchContainerRunnable.r=
=3D
un(GiraphApplicationMaster.java:479)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.jav=
=3D
a:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.ja=
=3D
va:615)
at java.lang.Thread.run(Thread.java:744)
Caused by: java.io.FileNotFoundException: File does not exist:
hdfs://hadoo=3D

p-master:9000/user/yarn/giraph_yarn_jar_cache/application_1415264041937_=
000=3D

9/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.=
jar
at
org.apache.hadoop.hdfs.DistributedFileSystem$17.doCall(DistributedFileSy=
=3D
stem.java:1072)
at
org.apache.hadoop.hdfs.DistributedFileSystem$17.doCall(DistributedFileSy=
=3D
stem.java:1064)
at
org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolv=
=3D
er.java:81)
at
org.apache.hadoop.hdfs.DistributedFileSystem.getFileStatus(DistributedFi=
=3D
leSystem.java:1064)
at
org.apache.giraph.yarn.YarnUtils.addFileToResourceMap(YarnUtils.java:153=
=3D
)
at
org.apache.giraph.yarn.YarnUtils.addFsResourcesToMap(YarnUtils.java:77)
at
org.apache.giraph.yarn.GiraphApplicationMaster.getTaskResourceMap(Giraph=
=3D
ApplicationMaster.java:387)
... 6 more


That justify the other error I receive in the task:
Could not find or load main class org.apache.giraph.yarn.GiraphYarnTas=
k

Thanks,

Il giorno 06/nov/2014, alle ore 13:07, Tripti Singh <
tripti@yahoo-inc.com<m=3D
ailto:tripti@yahoo-inc.com>> ha scritto:

Why r u adding two jars? Example jar ideally contains core library so
every=3D
thing should be available with just one example jar included

Sent from my iPhone

On 06-Nov-2014, at 4:33 pm, "Alessandro Negro" <alenegro81@yahoo.it
<mailto:=3D
alenegro81@yahoo.it>> wrote:

Hi,
now it seems better, I need to add:


giraph-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar,giraph-=
exa=3D
mples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar


Now it seems that after a lot of cycle it fail with this error:

Could not find or load main class org.apache.giraph.yarn.GiraphYarnTas=
k

But in this case the error appear in task-3-stderr.log  not in
gam-stderr.l=3D
og where there is the following error:

LF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in
[jar:file:/private/tmp/hadoop-yarn/nm-local-dir/use=3D

rcache/ale/appcache/application_1415264041937_0006/filecache/12/giraph-1=
.1.=3D

0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar!/org/slf4j/impl/St=
ati=3D
cLoggerBinder.class]
SLF4J: Found binding in
[jar:file:/private/tmp/hadoop-yarn/nm-local-dir/use=3D

rcache/ale/appcache/application_1415264041937_0006/filecache/10/giraph-e=
xam=3D

ples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar!/org/slf4=
j/i=3D
mpl/StaticLoggerBinder.class]
SLF4J: Found binding in
[jar:file:/opt/yarn/hadoop-2.5.1/share/hadoop/commo=3D
n/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class=
]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an