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From Jing Fan <fanjin...@gmail.com>
Subject Re: Help with Giraph on Yarn
Date Wed, 05 Nov 2014 17:33:26 GMT
I run with:

hadoop jar
giraph-examples/target/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.0-cdh5.2.0-jar-with-dependencies.jar
org.apache.giraph.GiraphRunner
org.apache.giraph.examples.SimpleShortestPathsComputation -vif
org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat
-vip /user/jing/tiny_graph.txt -vof
org.apache.giraph.io.formats.IdWithValueTextOutputFormat -op
/user/jing/shortestpaths -w 1 -yj
giraph-core/target/giraph-1.1.0-SNAPSHOT-for-hadoop-2.5.0-cdh5.2.0-jar-with-dependencies.jar

On Wed, Nov 5, 2014 at 11:25 AM, Alessandro Negro <alenegro81@yahoo.it>
wrote:

> This is my complete logs with the command I run:
>
>
> ale:~ />$HADOOP_INSTALL/bin/hadoop jar
> /Users/ale/extprj/giraph/giraph-examples/target/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar
> org.apache.giraph.GiraphRunner
> org.apache.giraph.examples.SimpleShortestPathsComputation -vif
> org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat
> -vip /tiny_graph.txt -vof
> org.apache.giraph.io.formats.IdWithValueTextOutputFormat -op /shortestpaths
> -w 1
> 2014-11-05 13:39:30.235 java[3147:1903] Unable to load realm info from
> SCDynamicStore
> 14/11/05 13:39:30 WARN util.NativeCodeLoader: Unable to load native-hadoop
> library for your platform... using builtin-java classes where applicable
> 14/11/05 13:39:30 INFO utils.ConfigurationUtils: No edge input format
> specified. Ensure your InputFormat does not require one.
> 14/11/05 13:39:30 INFO utils.ConfigurationUtils: No edge output format
> specified. Ensure your OutputFormat does not require one.
> 14/11/05 13:39:31 INFO yarn.GiraphYarnClient: Final output path is:
> hdfs://hadoop-master:9000/shortestpaths
> 14/11/05 13:39:31 INFO yarn.GiraphYarnClient: Running Client
> 14/11/05 13:39:31 INFO client.RMProxy: Connecting to ResourceManager at /
> 0.0.0.0:8032
> 14/11/05 13:39:31 INFO yarn.GiraphYarnClient: Got node report from ASM
> for, nodeId=192.168.0.105:50658, nodeAddress 192.168.0.105:8042,
> nodeRackName /default-rack, nodeNumContainers 0
> 14/11/05 13:39:31 INFO yarn.GiraphYarnClient: Defaulting per-task heap
> size to 1024MB.
> 14/11/05 13:39:31 INFO yarn.GiraphYarnClient: Obtained new Application ID:
> application_1415189069846_0004
> 14/11/05 13:39:31 INFO Configuration.deprecation: mapred.job.id is
> deprecated. Instead, use mapreduce.job.id
> 14/11/05 13:39:31 INFO yarn.GiraphYarnClient: Set the environment for the
> application master
> 14/11/05 13:39:31 INFO yarn.GiraphYarnClient: Environment for AM
> :{CLASSPATH=${CLASSPATH}:./*:$HADOOP_CONF_DIR:$HADOOP_COMMON_HOME/share/hadoop/common/*:$HADOOP_COMMON_HOME/share/hadoop/common/lib/*:$HADOOP_HDFS_HOME/share/hadoop/hdfs/*:$HADOOP_HDFS_HOME/share/hadoop/hdfs/lib/*:$HADOOP_YARN_HOME/share/hadoop/yarn/*:$HADOOP_YARN_HOME/share/hadoop/yarn/lib/*:$HADOOP_MAPRED_HOME/share/hadoop/mapreduce/*:$HADOOP_MAPRED_HOME/share/hadoop/mapreduce/lib/*}
> 14/11/05 13:39:31 INFO yarn.GiraphYarnClient: buildLocalResourceMap ....
> 14/11/05 13:39:31 INFO yarn.YarnUtils: Registered file in LocalResources
> ::
> hdfs://hadoop-master:9000/user/ale/giraph_yarn_jar_cache/application_1415189069846_0004/giraph-conf.xml
> 14/11/05 13:39:31 INFO yarn.GiraphYarnClient: LIB JARS :
> 14/11/05 13:39:31 INFO yarn.YarnUtils: Class path name .
> 14/11/05 13:39:31 INFO yarn.YarnUtils: base path checking .
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name null
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking null
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /opt/yarn/hadoop-2.5.1/etc/hadoop
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /opt/yarn/hadoop-2.5.1/etc/hadoop
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /opt/yarn/hadoop-2.5.1/share/hadoop/common/lib/*
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /opt/yarn/hadoop-2.5.1/share/hadoop/common/lib
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /opt/yarn/hadoop-2.5.1/share/hadoop/common/*
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /opt/yarn/hadoop-2.5.1/share/hadoop/common
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /opt/yarn/hadoop-2.5.1/share/hadoop/hdfs
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /opt/yarn/hadoop-2.5.1/share/hadoop/hdfs
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/lib/*
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/lib
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/*
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /opt/yarn/hadoop-2.5.1/share/hadoop/hdfs
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /opt/yarn/hadoop-2.5.1/share/hadoop/yarn/lib/*
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /opt/yarn/hadoop-2.5.1/share/hadoop/yarn/lib
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /opt/yarn/hadoop-2.5.1/share/hadoop/yarn/*
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /opt/yarn/hadoop-2.5.1/share/hadoop/yarn
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/lib/*
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/lib
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/*
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce
> 14/11/05 14:42:56 INFO yarn.YarnUtils: Class path name
> /contrib/capacity-scheduler/*.jar
> 14/11/05 14:42:56 INFO yarn.YarnUtils: base path checking
> /contrib/capacity-scheduler
> 14/11/05 14:42:56 INFO yarn.GiraphYarnClient: ApplicationSumbissionContext
> for GiraphApplicationMaster launch container is populated.
> 14/11/05 14:42:56 INFO yarn.GiraphYarnClient: Submitting application to ASM
> 14/11/05 14:42:57 INFO impl.YarnClientImpl: Submitted application
> application_1415189069846_0004
> 14/11/05 14:42:57 INFO yarn.GiraphYarnClient: Got new appId after
> submission :application_1415189069846_0004
> 14/11/05 14:42:57 INFO yarn.GiraphYarnClient: GiraphApplicationMaster
> container request was submitted to ResourceManager for job: Giraph:
> org.apache.giraph.examples.SimpleShortestPathsComputation
> 14/11/05 14:42:57 INFO yarn.GiraphYarnClient: Giraph:
> org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 0,82
> secs
> 14/11/05 14:42:57 INFO yarn.GiraphYarnClient:
> appattempt_1415189069846_0004_000001, State: ACCEPTED, Containers used: 1
> 14/11/05 14:43:01 ERROR yarn.GiraphYarnClient: Giraph:
> org.apache.giraph.examples.SimpleShortestPathsComputation reports FAILED
> state, diagnostics show: Application application_1415189069846_0004 failed
> 2 times due to AM Container for appattempt_1415189069846_0004_000002 exited
> with  exitCode: 1 due to: Exception from container-launch:
> ExitCodeException exitCode=1:
> ExitCodeException exitCode=1:
> at org.apache.hadoop.util.Shell.runCommand(Shell.java:538)
> at org.apache.hadoop.util.Shell.run(Shell.java:455)
> at
> org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:702)
> at
> org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor.launchContainer(DefaultContainerExecutor.java:195)
> at
> org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:300)
> at
> org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:81)
> at java.util.concurrent.FutureTask.run(FutureTask.java:262)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:744)
>
>
> Container exited with a non-zero exit code 1
> .Failing this attempt.. Failing the application.
> 14/11/05 14:43:01 INFO yarn.GiraphYarnClient: Cleaning up HDFS distributed
> cache directory for Giraph job.
> 14/11/05 14:43:01 INFO yarn.GiraphYarnClient: Completed Giraph:
> org.apache.giraph.examples.SimpleShortestPathsComputation: FAILED, total
> running time: 0 minutes, 3 seconds.
>
>
> Il giorno 05/nov/2014, alle ore 18:17, Tripti Singh <tripti@yahoo-inc.com>
> ha scritto:
>
>  I faced the similar problem where the workflow just hangs.
> Can u see in ur logs if there is a task with id 0.
> I made a local fix and I could give u the patch if u see a similar problem
> and ur workflow is unable to find the zookeeper manager file and repeats
> the following message:
> For task xyz, got file 'null'
>
> Thanks,
> Tripti
> Sent from my iPhone
>
> On 05-Nov-2014, at 10:40 pm, "Alessandro Negro" <alenegro81@yahoo.it>
> wrote:
>
>  Hi,
> have you seen the hadoop logs?
> Could you write here how are you running the command?
>
>  Thanks,
> Alessandro
>
>  Il giorno 05/nov/2014, alle ore 18:04, Jing Fan <fanjing09@gmail.com> ha
> scritto:
>
>  Yeah, I add -yj option. The result is the same. Still error here.
>
> On Wed, Nov 5, 2014 at 10:52 AM, Alessandro Negro <alenegro81@yahoo.it>
> wrote:
>
>> Hi Jing,
>> I’m facing the same problem. Do you check the hadoop logs? In my case I
>> got:
>>
>> Could not find or load main class org.apache.giraph.yarn.GiraphApplicationMaster
>>
>>  Moreover I don’t know why my application hang for a long time here:
>>
>>  14/11/05 17:11:17 INFO yarn.YarnUtils: base path checking .
>>
>>  And then continue failing with your error into the output and the other
>> into the hadoop logs.
>>
>>  Did you test adding this?
>>
>>  -yj
>> /Users/ale/extprj/giraph/giraph-core/target/giraph-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar
>>
>>  Thanks,
>> Alessandro
>>
>>
>>  Il giorno 05/nov/2014, alle ore 17:32, Jing Fan <fanjing09@gmail.com>
>> ha scritto:
>>
>>  Hi,
>>
>>  I install the Giraph with Yarn.
>> But when I run the program with following command:
>>
>>   hadoop jar
>> giraph-examples/target/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.0-cdh5.2.0-jar-with-dependencies.jar
>> org.apache.giraph.GiraphRunner
>> org.apache.giraph.examples.SimpleShortestPathsComputation -vif
>> org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat
>> -vip /user/j/tiny_graph.txt -vof
>> org.apache.giraph.io.formats.IdWithValueTextOutputFormat -op
>> /user/j/shortestpaths -w 1
>>
>>  The program exited with error:
>>
>>  14/11/05 10:25:14 INFO yarn.GiraphYarnClient: Giraph:
>> org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 0.83
>> secs
>> 14/11/05 10:25:14 INFO yarn.GiraphYarnClient:
>> appattempt_1415203231170_0002_000001, State: ACCEPTED, Containers used: 0
>> 14/11/05 10:25:18 INFO yarn.GiraphYarnClient: Giraph:
>> org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 4.84
>> secs
>> 14/11/05 10:25:18 INFO yarn.GiraphYarnClient:
>> appattempt_1415203231170_0002_000001, State: ACCEPTED, Containers used: 0
>> 14/11/05 10:25:22 INFO yarn.GiraphYarnClient: Giraph:
>> org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 8.85
>> secs
>> 14/11/05 10:25:22 INFO yarn.GiraphYarnClient:
>> appattempt_1415203231170_0002_000002, State: ACCEPTED, Containers used: 0
>> 14/11/05 10:25:26 INFO yarn.GiraphYarnClient: Giraph:
>> org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 12.86
>> secs
>> 14/11/05 10:25:26 INFO yarn.GiraphYarnClient:
>> appattempt_1415203231170_0002_000002, State: ACCEPTED, Containers used: 0
>> 14/11/05 10:25:29 ERROR yarn.GiraphYarnClient: Giraph:
>> org.apache.giraph.examples.SimpleShortestPathsComputation reports FAILED
>> state, diagnostics show: Application application_1415203231170_0002 failed
>> 2 times due to AM Container for appattempt_1415203231170_0002_000002 exited
>> with  exitCode: 1 due to: Exception from container-launch.
>> Container id: container_1415203231170_0002_02_000001
>> Exit code: 1
>> Stack trace: ExitCodeException exitCode=1:
>> at org.apache.hadoop.util.Shell.runCommand(Shell.java:538)
>> at org.apache.hadoop.util.Shell.run(Shell.java:455)
>> at
>> org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:702)
>> at
>> org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor.launchContainer(DefaultContainerExecutor.java:196)
>> at
>> org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:299)
>> at
>> org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:81)
>> at java.util.concurrent.FutureTask.run(FutureTask.java:262)
>> at
>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
>> at
>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
>> at java.lang.Thread.run(Thread.java:745)
>>
>>
>>  Anyone can help?
>>
>>
>>
>
>
>

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