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From Alessandro Negro <alenegr...@yahoo.it>
Subject Re: Help with Giraph on Yarn
Date Sat, 22 Nov 2014 23:40:48 GMT
HI Das,
what about the hadoop logs? Have a look there and let me know.
In the meantime you can remove redundant jars from yarn jars (exampe contains all jars needed): 

> yarnjars=giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar


Should be enough

Alessandro.

Il giorno 23/nov/2014, alle ore 00:16, D Adams <dadamszx@gmail.com> ha scritto:

> Hi Alessandro,
>      Do you run tyarn that way because your hadoop or giraph file permissions are chowned by a user named yarn?
> 
> I have made changes as suggested on http://mail-archives.apache.org/mod_mbox/giraph-user/201408.mbox/%3C53F4C689.5060101@web.de%3E
> 
> And although things do look more hopeful, I still get an infinite loop. I run with as script which includes:
> 
> user_dir=/user/hduser
> jar=giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
> runner=org.apache.giraph.GiraphRunner
> computation=org.apache.giraph.examples.SimpleShortestPathsComputation
> informat=org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat
> outformat=org.apache.giraph.io.formats.IdWithValueTextOutputFormat
> yarnjars=giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar,giraph-core-1.1.0-SNAPSHOT.jar,giraph-1.1.0-hadoop-2.5.1.jar
> 
> bin/hdfs dfs -rm -r $user_dir/output/shortestpaths
> bin/yarn jar $GIRAPH_HOME/$jar $runner -Dgiraph.yarn.task.heap.mb=3000 $computation -vif $informat -vip $user_dir/input/tiny_graph.txt -vof $outformat -op $user_dir/output/shortestpaths -w 1 -yj $yarnjars
> 
> And the resulting stdout:
> hduser@Roosevelt:/usr/local/hadoop$ ./hduser_jobs.sh
> Running hduser script ...
> 14/11/18 19:05:47 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
> rm: `/user/hduser/output/shortestpaths': No such file or directory
> 14/11/18 19:06:13 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
> 14/11/18 19:06:15 INFO utils.ConfigurationUtils: No edge input format specified. Ensure your InputFormat does not require one.
> 14/11/18 19:06:15 INFO utils.ConfigurationUtils: No edge output format specified. Ensure your OutputFormat does not require one.
> 14/11/18 19:06:16 INFO yarn.GiraphYarnClient: Final output path is: hdfs://localhost:9000/user/hduser/output/shortestpaths
> 14/11/18 19:06:16 INFO yarn.GiraphYarnClient: Running Client
> 14/11/18 19:06:16 INFO client.RMProxy: Connecting to ResourceManager at localhost/127.0.0.1:8050
> 14/11/18 19:06:17 INFO yarn.GiraphYarnClient: Got node report from ASM for, nodeId=roosevelt:58195, nodeAddress roosevelt:8042, nodeRackName /default-rack, nodeNumContainers 0
> 14/11/18 19:06:17 INFO yarn.GiraphYarnClient: Obtained new Application ID: application_1416359131664_0001
> 14/11/18 19:06:17 INFO Configuration.deprecation: mapred.job.id is deprecated. Instead, use mapreduce.job.id
> 14/11/18 19:06:17 INFO yarn.GiraphYarnClient: Set the environment for the application master
> 14/11/18 19:06:17 INFO yarn.GiraphYarnClient: Environment for AM :{CLASSPATH=${CLASSPATH}:./*:$HADOOP_CONF_DIR:$HADOOP_COMMON_HOME/share/hadoop/common/*:$HADOOP_COMMON_HOME/share/hadoop/common/lib/*:$HADOOP_HDFS_HOME/share/hadoop/hdfs/*:$HADOOP_HDFS_HOME/share/hadoop/hdfs/lib/*:$HADOOP_YARN_HOME/share/hadoop/yarn/*:$HADOOP_YARN_HOME/share/hadoop/yarn/lib/*:$HADOOP_MAPRED_HOME/share/hadoop/mapreduce/*:$HADOOP_MAPRED_HOME/share/hadoop/mapreduce/lib/*}
> 14/11/18 19:06:17 INFO yarn.GiraphYarnClient: buildLocalResourceMap ....
> 14/11/18 19:06:19 INFO yarn.YarnUtils: Registered file in LocalResources :: hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-conf.xml
> 14/11/18 19:06:19 INFO yarn.GiraphYarnClient: LIB JARS :giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar,giraph-core-1.1.0-SNAPSHOT.jar,giraph-1.1.0-hadoop-2.5.1.jar
> 14/11/18 19:06:19 INFO yarn.YarnUtils: Class path name .
> 14/11/18 19:06:19 INFO yarn.YarnUtils: base path checking .
> 14/11/18 19:06:19 INFO yarn.YarnUtils: Class path name /usr/local/hadoop
> 14/11/18 19:06:19 INFO yarn.YarnUtils: base path checking /usr/local/hadoop
> 14/11/18 19:06:19 INFO yarn.YarnUtils: Class path name null
> 14/11/18 19:06:19 INFO yarn.YarnUtils: base path checking null
> 14/11/18 19:06:19 INFO yarn.GiraphYarnClient: Made local resource for :/usr/local/hadoop/share/myLib/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar to hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
> 14/11/18 19:06:23 INFO yarn.YarnUtils: Registered file in LocalResources :: hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
> 14/11/18 19:06:23 INFO yarn.GiraphYarnClient: ApplicationSumbissionContext for GiraphApplicationMaster launch container is populated.
> 14/11/18 19:06:23 INFO yarn.GiraphYarnClient: Submitting application to ASM
> 14/11/18 19:06:23 INFO impl.YarnClientImpl: Submitted application application_1416359131664_0001
> 14/11/18 19:06:23 INFO yarn.GiraphYarnClient: Got new appId after submission :application_1416359131664_0001
> 14/11/18 19:06:23 INFO yarn.GiraphYarnClient: GiraphApplicationMaster container request was submitted to ResourceManager for job: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation
> 14/11/18 19:06:24 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 0.90 secs
> 14/11/18 19:06:24 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: ACCEPTED, Containers used: 0
> 14/11/18 19:06:28 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 5.05 secs
> 14/11/18 19:06:28 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: ACCEPTED, Containers used: 1
> 14/11/18 19:06:33 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 9.89 secs
> 14/11/18 19:06:33 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: ACCEPTED, Containers used: 1
> 14/11/18 19:06:37 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 14.37 secs
> 14/11/18 19:06:37 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: ACCEPTED, Containers used: 1
> 14/11/18 19:06:42 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 18.81 secs
> 14/11/18 19:06:42 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: ACCEPTED, Containers used: 1
> 14/11/18 19:06:46 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 22.82 secs
> 14/11/18 19:06:46 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
> 14/11/18 19:06:50 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 26.83 secs
> 14/11/18 19:06:50 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
> 14/11/18 19:06:54 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 30.83 secs
> 14/11/18 19:06:54 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
> 14/11/18 19:06:58 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 34.85 secs
> 14/11/18 19:06:58 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
> 14/11/18 19:07:02 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 38.85 secs
> 14/11/18 19:07:02 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
> 14/11/18 19:07:06 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 42.86 secs
> 14/11/18 19:07:06 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
> 14/11/18 19:07:10 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 46.88 secs
> 14/11/18 19:07:10 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
> 14/11/18 19:07:14 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 50.89 secs
> 14/11/18 19:07:14 INFO yarn.GiraphYarnClient: appattempt_1416359131664_0001_000001, State: RUNNING, Containers used: 2
> 14/11/18 19:07:18 INFO yarn.GiraphYarnClient: Giraph: org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 54.90 secs
> 
> Once yarn hits the RUNNING state, it enters an endless loop. It seems it is caused by the following:
> 
> 
> 2014-11-18 19:06:37,382 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:main(421)) - Starting GitaphAM 
> 2014-11-18 19:06:39,214 WARN  [main] util.NativeCodeLoader (NativeCodeLoader.java:<clinit>(62)) - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
> 2014-11-18 19:06:41,438 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:<init>(168)) - GiraphAM  for ContainerId container_1416359131664_0001_01_000001 ApplicationAttemptId appattempt_1416359131664_0001_000001
> 2014-11-18 19:06:41,497 INFO  [main] client.RMProxy (RMProxy.java:createRMProxy(92)) - Connecting to ResourceManager at localhost/127.0.0.1:8030
> 2014-11-18 19:06:41,581 INFO  [main] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:serviceInit(107)) - Upper bound of the thread pool size is 500
> 2014-11-18 19:06:41,583 INFO  [main] impl.ContainerManagementProtocolProxy (ContainerManagementProtocolProxy.java:<init>(78)) - yarn.client.max-nodemanagers-proxies : 500
> 2014-11-18 19:06:42,355 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:setupContainerAskForRM(279)) - Requested container ask: Capability[<memory:3000, vCores:0>]Priority[10]
> 2014-11-18 19:06:42,370 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:setupContainerAskForRM(279)) - Requested container ask: Capability[<memory:3000, vCores:0>]Priority[10]
> 2014-11-18 19:06:42,618 INFO  [main] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:run(185)) - Wait to finish ..
> 2014-11-18 19:06:44,673 INFO  [AMRM Heartbeater thread] impl.AMRMClientImpl (AMRMClientImpl.java:populateNMTokens(299)) - Received new token for : roosevelt:58195
> 2014-11-18 19:06:44,677 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(605)) - Got response from RM for container ask, allocatedCnt=1
> 2014-11-18 19:06:44,677 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(608)) - Total allocated # of container so far : 1 allocated out of 2 required.
> 2014-11-18 19:06:44,678 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:startContainerLaunchingThreads(359)) - Launching command on a new container., containerId=container_1416359131664_0001_01_000002, containerNode=roosevelt:58195, containerNodeURI=roosevelt:8042, containerResourceMemory=3072
> 2014-11-18 19:06:44,679 INFO  [pool-4-thread-1] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(492)) - Setting up container launch container for containerid=container_1416359131664_0001_01_000002
> 2014-11-18 19:06:44,694 INFO  [pool-4-thread-1] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(498)) - Conatain launch Commands :java -Xmx3000M -Xms3000M -cp .:${CLASSPATH} org.apache.giraph.yarn.GiraphYarnTask 1416359131664 1 2 1 1><LOG_DIR>/task-2-stdout.log 2><LOG_DIR>/task-2-stderr.log 
> 2014-11-18 19:06:44,694 INFO  [pool-4-thread-1] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(518)) - Setting username in ContainerLaunchContext to: hduser
> 2014-11-18 19:06:45,191 INFO  [pool-4-thread-1] yarn.YarnUtils (YarnUtils.java:addFsResourcesToMap(72)) - Adding giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar to LocalResources for export.to hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
> 2014-11-18 19:06:45,228 INFO  [pool-4-thread-1] yarn.YarnUtils (YarnUtils.java:addFileToResourceMap(160)) - Registered file in LocalResources :: hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-examples-1.1.0-hadoop-2.5.1-jar-with-dependencies.jar
> 2014-11-18 19:06:45,228 INFO  [pool-4-thread-1] yarn.YarnUtils (YarnUtils.java:addFsResourcesToMap(72)) - Adding giraph-core-1.1.0-SNAPSHOT.jar to LocalResources for export.to hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416359131664_0001/giraph-core-1.1.0-SNAPSHOT.jar
> 2014-11-18 19:06:45,683 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(605)) - Got response from RM for container ask, allocatedCnt=1
> 2014-11-18 19:06:45,683 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersAllocated(608)) - Total allocated # of container so far : 2 allocated out of 2 required.
> 2014-11-18 19:06:45,683 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:startContainerLaunchingThreads(359)) - Launching command on a new container., containerId=container_1416359131664_0001_01_000003, containerNode=roosevelt:58195, containerNodeURI=roosevelt:8042, containerResourceMemory=3072
> 2014-11-18 19:06:45,684 INFO  [pool-4-thread-3] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(492)) - Setting up container launch container for containerid=container_1416359131664_0001_01_000003
> 2014-11-18 19:06:45,684 INFO  [pool-4-thread-3] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(498)) - Conatain launch Commands :java -Xmx3000M -Xms3000M -cp .:${CLASSPATH} org.apache.giraph.yarn.GiraphYarnTask 1416359131664 1 3 1 1><LOG_DIR>/task-3-stdout.log 2><LOG_DIR>/task-3-stderr.log 
> 2014-11-18 19:06:45,684 INFO  [pool-4-thread-3] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:buildContainerLaunchContext(518)) - Setting username in ContainerLaunchContext to: hduser
> 2014-11-18 19:06:45,697 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #0] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing Event EventType: START_CONTAINER for Container container_1416359131664_0001_01_000003
> 2014-11-18 19:06:45,699 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #0] impl.ContainerManagementProtocolProxy (ContainerManagementProtocolProxy.java:newProxy(212)) - Opening proxy : roosevelt:58195
> 2014-11-18 19:06:45,761 INFO  [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #1] impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing Event EventType: QUERY_CONTAINER for Container container_1416359131664_0001_01_000003
> 2014-11-18 19:06:46,687 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersCompleted(571)) - Got response from RM for container ask, completedCnt=1
> 2014-11-18 19:06:46,688 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersCompleted(574)) - Got container status for containerID=container_1416359131664_0001_01_000003, state=COMPLETE, exitStatus=1, diagnostics=Exception from container-launch: ExitCodeException exitCode=1: 
> ExitCodeException exitCode=1: 
> 	at org.apache.hadoop.util.Shell.runCommand(Shell.java:538)
> 	at org.apache.hadoop.util.Shell.run(Shell.java:455)
> 	at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:702)
> 	at org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor.launchContainer(DefaultContainerExecutor.java:195)
> 	at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:300)
> 	at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:81)
> 	at java.util.concurrent.FutureTask.run(FutureTask.java:262)
> 	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> 	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> 	at java.lang.Thread.run(Thread.java:745)
> 
> 
> Container exited with a non-zero exit code 1
> 
> 2014-11-18 19:06:46,688 INFO  [AMRM Callback Handler Thread] yarn.GiraphApplicationMaster (GiraphApplicationMaster.java:onContainersCompleted(596)) - After completion of one conatiner. current status is: completedCount :1 containersToLaunch :2 successfulCount :0 failedCount :1
> 
> On Sat, Nov 22, 2014 at 11:42 AM, D Adams <dadamszx@gmail.com> wrote:
> I'm sorry, please excuse my ignorance, but, I have no idea where to find my configuration. That is, I have no idea where these lines came from (or what file):
> 
> yarn             1029   0,1  1,2  3499572 209560 s001  S    10:29am   0:06.04 /Library/Java/
> JavaVirtualMachines/jdk1.7.0_45.jdk/Contents/Home/bin/java -Dproc_resourcemanager -Xmx500m -Dhadoop.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dyarn.log.dir=/opt/yarn/hadoop-2.5.1/logs
> ...
> As far as configuration goes, I'm only really aware of the etc/hadoop/*-env.sh and .xml files and main pom.xml file. Or is the above part of the command you use to run giraph jobs?
> I will make changes to hadoop-env.sh file as you suggest and let you know how it works out.
> 
> On Fri, Nov 21, 2014 at 6:05 AM, Alessandro Negro <alenegro81@yahoo.it> wrote:
> Hi,
> I forgot to say that I added also this line: 
> 
> export HADOOP_CLASSPATH=$HADOOP_CLASSPATH:$MYLIB
> 
> 
> Il giorno 21/nov/2014, alle ore 10:34, Alessandro Negro <alenegro81@yahoo.it> ha scritto:
> 
>> Hi Das,
>> this is my configuration of hadoop:
>> 
>> yarn             1029   0,1  1,2  3499572 209560 s001  S    10:29am   0:06.04 /Library/Java/JavaVirtualMachines/jdk1.7.0_45.jdk/Contents/Home/bin/java -Dproc_resourcemanager -Xmx500m -Dhadoop.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dyarn.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dhadoop.log.file=yarn-yarn-resourcemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.log.file=yarn-yarn-resourcemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.home.dir= -Dyarn.id.str=yarn -Dhadoop.root.logger=INFO,RFA -Dyarn.root.logger=INFO,RFA -Djava.library.path=/opt/yarn/hadoop-2.5.1/lib/native -Dyarn.policy.file=hadoop-policy.xml -Dhadoop.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dyarn.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dhadoop.log.file=yarn-yarn-resourcemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.log.file=yarn-yarn-resourcemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.home.dir=/opt/yarn/hadoop-2.5.1 -Dhadoop.home.dir=/opt/yarn/hadoop-2.5.1 -Dhadoop.root.logger=INFO,RFA -Dyarn.root.logger=INFO,RFA -Djava.library.path=/opt/yarn/hadoop-2.5.1/lib/native -classpath /opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/share/hadoop/common/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/common/*:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/*:/opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/*::/opt/yarn/hadoop-2.5.1/share/myLib/*.jar:/Users/ale/extprj/giraph/myGiraph/*.jar:/Users/ale/extprj/giraph/myGiraph/lib/*.jar:/contrib/capacity-scheduler/*.jar:/opt/yarn/hadoop-2.5.1/share/myLib/*.jar:/Users/ale/extprj/giraph/myGiraph/*.jar:/Users/ale/extprj/giraph/myGiraph/lib/*.jar:/contrib/capacity-scheduler/*.jar:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/lib/*:/opt/yarn/hadoop-2.5.1/etc/hadoop/rm-config/log4j.properties org.apache.hadoop.yarn.server.resourcemanager.ResourceManager
>> yarn             1073   0,1  1,0  3347132 174644 s001  S    10:29am   0:04.77 /Library/Java/JavaVirtualMachines/jdk1.7.0_45.jdk/Contents/Home/bin/java -Dproc_nodemanager -Xmx500m -Dhadoop.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dyarn.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dhadoop.log.file=yarn-yarn-nodemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.log.file=yarn-yarn-nodemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.home.dir= -Dyarn.id.str=yarn -Dhadoop.root.logger=INFO,RFA -Dyarn.root.logger=INFO,RFA -Djava.library.path=/opt/yarn/hadoop-2.5.1/lib/native -Dyarn.policy.file=hadoop-policy.xml -server -Dhadoop.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dyarn.log.dir=/opt/yarn/hadoop-2.5.1/logs -Dhadoop.log.file=yarn-yarn-nodemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.log.file=yarn-yarn-nodemanager-MacBook-Pro-di-Alessandro.local.log -Dyarn.home.dir=/opt/yarn/hadoop-2.5.1 -Dhadoop.home.dir=/opt/yarn/hadoop-2.5.1 -Dhadoop.root.logger=INFO,RFA -Dyarn.root.logger=INFO,RFA -Djava.library.path=/opt/yarn/hadoop-2.5.1/lib/native -classpath /opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/etc/hadoop:/opt/yarn/hadoop-2.5.1/share/hadoop/common/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/common/*:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/hdfs/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/*:/opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/lib/*:/opt/yarn/hadoop-2.5.1/share/hadoop/mapreduce/*::/opt/yarn/hadoop-2.5.1/share/myLib/*.jar:/Users/ale/extprj/giraph/myGiraph/*.jar:/Users/ale/extprj/giraph/myGiraph/lib/*.jar:/contrib/capacity-scheduler/*.jar:/opt/yarn/hadoop-2.5.1/share/myLib/*.jar:/Users/ale/extprj/giraph/myGiraph/*.jar:/Users/ale/extprj/giraph/myGiraph/lib/*.jar:/contrib/capacity-scheduler/*.jar:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/*:/opt/yarn/hadoop-2.5.1/share/hadoop/yarn/lib/*:/opt/yarn/hadoop-2.5.1/etc/hadoop/nm-config/log4j.properties org.apache.hadoop.yarn.server.nodemanager.NodeManager
>> 
>> So I run it as yarn user in this way:
>> 
>> sudo -u yarn ….
>> 
>> Moreover I have just notice that I added the following lines into the hadoop-env.sh
>> 
>> hadoop-env.sh:export MYLIB=/opt/yarn/hadoop-2.5.1/share/myLib/*.jar:/Users/ale/extprj/giraph/myGiraph/*.jar:/Users/ale/extprj/giraph/myGiraph/lib/*.jar
>> 
>> Accordingly to this other thread:
>> 
>> http://mail-archives.apache.org/mod_mbox/giraph-user/201408.mbox/%3C53F4C689.5060101@web.de%3E
>> 
>> Let me know,
>> Alessandro
>> 
>> 
>> Il giorno 20/nov/2014, alle ore 23:51, D Adams <dadamszx@gmail.com> ha scritto:
>> 
>>> --f46d044283ecf837440508522939
>>> Content-Type: text/plain; charset=UTF-8
>>> Content-Transfer-Encoding: quoted-printable
>>> 
>>> Ok, in the following, I use bin/yarn. Doesn't seem like much has changed:
>>> 
>>> hduser@Roosevelt:/usr/local/hadoop$ ./hduser_jobs.sh
>>> Running hduser script ...
>>> bin/yarn jar
>>> /usr/local/giraph/giraph-examples/target/giraph-examples-1.1.0-SNAPSHOT-for=
>>> -hadoop-2.5.1-jar-with-dependencies.jar
>>> org.apache.giraph.GiraphRunner
>>> org.apache.giraph.examples.SimpleShortestPathsComputation -vif
>>> org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat
>>> -vip /user/hduser/input/tiny_graph.txt -vof
>>> org.apache.giraph.io.formats.IdWithValueTextOutputFormat -op
>>> /user/hduser/output/shortestpaths -w 1 -yj
>>> giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar
>>> 14/11/18 05:36:05 WARN util.NativeCodeLoader: Unable to load native-hadoop
>>> library for your platform... using builtin-java classes where applicable
>>> 14/11/18 05:36:08 INFO utils.ConfigurationUtils: No edge input format
>>> specified. Ensure your InputFormat does not require one.
>>> 14/11/18 05:36:08 INFO utils.ConfigurationUtils: No edge output format
>>> specified. Ensure your OutputFormat does not require one.
>>> 14/11/18 05:36:08 INFO yarn.GiraphYarnClient: Final output path is:
>>> hdfs://localhost:9000/user/hduser/output/shortestpaths
>>> 14/11/18 05:36:08 INFO yarn.GiraphYarnClient: Running Client
>>> 14/11/18 05:36:08 INFO client.RMProxy: Connecting to ResourceManager at
>>> localhost/127.0.0.1:8050
>>> 14/11/18 05:36:09 INFO yarn.GiraphYarnClient: Got node report from ASM for,
>>> nodeId=3Droosevelt:60486, nodeAddress roosevelt:8042, nodeRackName
>>> /default-rack, nodeNumContainers 0
>>> 14/11/18 05:36:09 INFO yarn.GiraphYarnClient: Defaulting per-task heap size
>>> to 1024MB.
>>> 14/11/18 05:36:09 INFO yarn.GiraphYarnClient: Obtained new Application ID:
>>> application_1416310496070_0001
>>> 14/11/18 05:36:09 INFO Configuration.deprecation: mapred.job.id is
>>> deprecated. Instead, use mapreduce.job.id
>>> 14/11/18 05:36:09 INFO yarn.GiraphYarnClient: Set the environment for the
>>> application master
>>> 14/11/18 05:36:09 INFO yarn.GiraphYarnClient: Environment for AM
>>> :{CLASSPATH=3D${CLASSPATH}:./*:$HADOOP_CONF_DIR:$HADOOP_COMMON_HOME/share/h=
>>> adoop/common/*:$HADOOP_COMMON_HOME/share/hadoop/common/lib/*:$HADOOP_HDFS_H=
>>> OME/share/hadoop/hdfs/*:$HADOOP_HDFS_HOME/share/hadoop/hdfs/lib/*:$HADOOP_Y=
>>> ARN_HOME/share/hadoop/yarn/*:$HADOOP_YARN_HOME/share/hadoop/yarn/lib/*:$HAD=
>>> OOP_MAPRED_HOME/share/hadoop/mapreduce/*:$HADOOP_MAPRED_HOME/share/hadoop/m=
>>> apreduce/lib/*}
>>> 14/11/18 05:36:09 INFO yarn.GiraphYarnClient: buildLocalResourceMap ....
>>> 14/11/18 05:36:12 INFO yarn.YarnUtils: Registered file in LocalResources ::
>>> hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
>>> 496070_0001/giraph-conf.xml
>>> 14/11/18 05:36:12 INFO yarn.GiraphYarnClient: LIB JARS
>>> :giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar
>>> 14/11/18 05:36:12 INFO yarn.YarnUtils: Class path name .
>>> 14/11/18 05:36:12 INFO yarn.YarnUtils: base path checking .
>>> 14/11/18 05:36:12 INFO yarn.GiraphYarnClient: Made local resource for
>>> :/usr/local/hadoop/share/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-ja=
>>> r-with-dependencies.jar
>>> to
>>> hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
>>> 496070_0001/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-depend=
>>> encies.jar
>>> 14/11/18 05:36:16 INFO yarn.YarnUtils: Registered file in LocalResources ::
>>> hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
>>> 496070_0001/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-depend=
>>> encies.jar
>>> 14/11/18 05:36:16 INFO yarn.GiraphYarnClient: ApplicationSumbissionContext
>>> for GiraphApplicationMaster launch container is populated.
>>> 14/11/18 05:36:16 INFO yarn.GiraphYarnClient: Submitting application to ASM
>>> 14/11/18 05:36:16 INFO impl.YarnClientImpl: Submitted application
>>> application_1416310496070_0001
>>> 14/11/18 05:36:16 INFO yarn.GiraphYarnClient: Got new appId after
>>> submission :application_1416310496070_0001
>>> 14/11/18 05:36:16 INFO yarn.GiraphYarnClient: GiraphApplicationMaster
>>> container request was submitted to ResourceManager for job: Giraph:
>>> org.apache.giraph.examples.SimpleShortestPathsComputation
>>> 14/11/18 05:36:17 INFO yarn.GiraphYarnClient: Giraph:
>>> org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 1.01
>>> secs
>>> 14/11/18 05:36:17 INFO yarn.GiraphYarnClient:
>>> appattempt_1416310496070_0001_000001, State: ACCEPTED, Containers used: 1
>>> 14/11/18 05:36:22 INFO yarn.GiraphYarnClient: Giraph:
>>> org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 5.86
>>> secs
>>> 14/11/18 05:36:22 INFO yarn.GiraphYarnClient:
>>> appattempt_1416310496070_0001_000001, State: ACCEPTED, Containers used: 1
>>> 14/11/18 05:36:26 INFO yarn.GiraphYarnClient: Giraph:
>>> org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 10.02
>>> secs
>>> 14/11/18 05:36:26 INFO yarn.GiraphYarnClient:
>>> appattempt_1416310496070_0001_000001, State: ACCEPTED, Containers used: 1
>>> 14/11/18 05:36:30 INFO yarn.GiraphYarnClient: Giraph:
>>> org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 14.39
>>> secs
>>> 14/11/18 05:36:30 INFO yarn.GiraphYarnClient:
>>> appattempt_1416310496070_0001_000001, State: ACCEPTED, Containers used: 1
>>> 14/11/18 05:36:34 INFO yarn.GiraphYarnClient: Giraph:
>>> org.apache.giraph.examples.SimpleShortestPathsComputation, Elapsed: 18.57
>>> secs
>>> 14/11/18 05:36:34 INFO yarn.GiraphYarnClient:
>>> appattempt_1416310496070_0001_000001, State: RUNNING, Containers used: 2
>>> 
>>> gam_stderr.log
>>> 
>>> LF4J: Class path contains multiple SLF4J bindings.
>>> SLF4J: Found binding in
>>> [jar:file:/app/hadoop/tmp/nm-local-dir/usercache/hduser/appcache/applicatio=
>>> n_1416310496070_0001/filecache/10/giraph-examples-1.1.0-SNAPSHOT-for-hadoop=
>>> -2.5.1-jar-with-dependencies.jar!/org/slf4j/impl/StaticLoggerBinder.class]
>>> SLF4J: Found binding in
>>> [jar:file:/usr/local/hadoop/share/hadoop/common/lib/slf4j-log4j12-1.7.5.jar=
>>> !/org/slf4j/impl/StaticLoggerBinder.class]
>>> SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explana=
>>> tion.
>>> SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
>>> 
>>> gam_stdout.log
>>> 
>>> 2014-11-18 05:36:28,143 INFO  [main] yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:main(421)) - Starting GitaphAM
>>> 2014-11-18 05:36:30,404 WARN  [main] util.NativeCodeLoader
>>> (NativeCodeLoader.java:<clinit>(62)) - Unable to load native-hadoop
>>> library for your platform... using builtin-java classes where
>>> applicable
>>> 2014-11-18 05:36:32,649 INFO  [main] yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:<init>(168)) - GiraphAM  for ContainerId
>>> container_1416310496070_0001_01_000001 ApplicationAttemptId
>>> appattempt_1416310496070_0001_000001
>>> 2014-11-18 05:36:32,852 INFO  [main] client.RMProxy
>>> (RMProxy.java:createRMProxy(92)) - Connecting to ResourceManager at
>>> localhost/127.0.0.1:8030
>>> 2014-11-18 05:36:32,888 INFO  [main] impl.NMClientAsyncImpl
>>> (NMClientAsyncImpl.java:serviceInit(107)) - Upper bound of the thread
>>> pool size is 500
>>> 2014-11-18 05:36:32,889 INFO  [main]
>>> impl.ContainerManagementProtocolProxy
>>> (ContainerManagementProtocolProxy.java:<init>(78)) -
>>> yarn.client.max-nodemanagers-proxies : 500
>>> 2014-11-18 05:36:33,589 INFO  [main] yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:setupContainerAskForRM(279)) - Requested
>>> container ask: Capability[<memory:1024, vCores:0>]Priority[10]
>>> 2014-11-18 05:36:33,617 INFO  [main] yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:setupContainerAskForRM(279)) - Requested
>>> container ask: Capability[<memory:1024, vCores:0>]Priority[10]
>>> 2014-11-18 05:36:33,617 INFO  [main] yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:run(185)) - Wait to finish ..
>>> 2014-11-18 05:36:35,674 INFO  [AMRM Heartbeater thread]
>>> impl.AMRMClientImpl (AMRMClientImpl.java:populateNMTokens(299)) -
>>> Received new token for : roosevelt:60486
>>> 2014-11-18 05:36:35,681 INFO  [AMRM Callback Handler Thread]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:onContainersAllocated(605)) - Got
>>> response from RM for container ask, allocatedCnt=3D1
>>> 2014-11-18 05:36:35,681 INFO  [AMRM Callback Handler Thread]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:onContainersAllocated(608)) - Total
>>> allocated # of container so far : 1 allocated out of 2 required.
>>> 2014-11-18 05:36:35,681 INFO  [AMRM Callback Handler Thread]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:startContainerLaunchingThreads(359)) -
>>> Launching command on a new container.,
>>> containerId=3Dcontainer_1416310496070_0001_01_000002,
>>> containerNode=3Droosevelt:60486, containerNodeURI=3Droosevelt:8042,
>>> containerResourceMemory=3D1024
>>> 2014-11-18 05:36:35,688 INFO  [pool-4-thread-1]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:buildContainerLaunchContext(492)) -
>>> Setting up container launch container for
>>> containerid=3Dcontainer_1416310496070_0001_01_000002
>>> 2014-11-18 05:36:35,720 INFO  [pool-4-thread-1]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:buildContainerLaunchContext(498)) -
>>> Conatain launch Commands :java -Xmx1024M -Xms1024M -cp .:${CLASSPATH}
>>> org.apache.giraph.yarn.GiraphYarnTask 1416310496070 1 2 1
>>> 1><LOG_DIR>/task-2-stdout.log 2><LOG_DIR>/task-2-stderr.log
>>> 2014-11-18 05:36:35,721 INFO  [pool-4-thread-1]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:buildContainerLaunchContext(518)) -
>>> Setting username in ContainerLaunchContext to: hduser
>>> 2014-11-18 05:36:36,789 INFO  [AMRM Callback Handler Thread]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:onContainersAllocated(605)) - Got
>>> response from RM for container ask, allocatedCnt=3D1
>>> 2014-11-18 05:36:36,789 INFO  [AMRM Callback Handler Thread]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:onContainersAllocated(608)) - Total
>>> allocated # of container so far : 2 allocated out of 2 required.
>>> 2014-11-18 05:36:36,790 INFO  [AMRM Callback Handler Thread]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:startContainerLaunchingThreads(359)) -
>>> Launching command on a new container.,
>>> containerId=3Dcontainer_1416310496070_0001_01_000003,
>>> containerNode=3Droosevelt:60486, containerNodeURI=3Droosevelt:8042,
>>> containerResourceMemory=3D1024
>>> 2014-11-18 05:36:37,227 INFO  [pool-4-thread-2]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:buildContainerLaunchContext(492)) -
>>> Setting up container launch container for
>>> containerid=3Dcontainer_1416310496070_0001_01_000003
>>> 2014-11-18 05:36:37,227 INFO  [pool-4-thread-2]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:buildContainerLaunchContext(498)) -
>>> Conatain launch Commands :java -Xmx1024M -Xms1024M -cp .:${CLASSPATH}
>>> org.apache.giraph.yarn.GiraphYarnTask 1416310496070 1 3 1
>>> 1><LOG_DIR>/task-3-stdout.log 2><LOG_DIR>/task-3-stderr.log
>>> 2014-11-18 05:36:37,227 INFO  [pool-4-thread-2]
>>> yarn.GiraphApplicationMaster
>>> (GiraphApplicationMaster.java:buildContainerLaunchContext(518)) -
>>> Setting username in ContainerLaunchContext to: hduser
>>> 2014-11-18 05:36:37,463 INFO  [pool-4-thread-1] yarn.YarnUtils
>>> (YarnUtils.java:addFsResourcesToMap(72)) - Adding
>>> giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar
>>> to LocalResources for export.to
>>> hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
>>> 496070_0001/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-depend=
>>> encies.jar
>>> 2014-11-18 05:36:37,678 INFO  [pool-4-thread-1] yarn.YarnUtils
>>> (YarnUtils.java:addFileToResourceMap(160)) - Registered file in
>>> LocalResources ::
>>> hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
>>> 496070_0001/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-depend=
>>> encies.jar
>>> 2014-11-18 05:36:37,678 WARN  [pool-4-thread-1] yarn.YarnUtils
>>> (YarnUtils.java:addFsResourcesToMap(81)) - Job jars (-yj option)
>>> didn't include giraph-core.
>>> 2014-11-18 05:36:37,680 INFO  [pool-4-thread-1] yarn.YarnUtils
>>> (YarnUtils.java:addFileToResourceMap(160)) - Registered file in
>>> LocalResources ::
>>> hdfs://localhost:9000/user/hduser/giraph_yarn_jar_cache/application_1416310=
>>> 496070_0001/giraph-conf.xml
>>> 2014-11-18 05:36:37,694 INFO
>>> [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #0]
>>> impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing
>>> Event EventType: START_CONTAINER for Container
>>> container_1416310496070_0001_01_000002
>>> 2014-11-18 05:36:37,699 INFO
>>> [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #1]
>>> impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing
>>> Event EventType: START_CONTAINER for Container
>>> container_1416310496070_0001_01_000003
>>> 2014-11-18 05:36:37,698 INFO
>>> [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #0]
>>> impl.ContainerManagementProtocolProxy
>>> (ContainerManagementProtocolProxy.java:newProxy(212)) - Opening proxy
>>> : roosevelt:60486
>>> 2014-11-18 05:36:37,761 INFO
>>> [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #2]
>>> impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing
>>> Event EventType: QUERY_CONTAINER for Container
>>> container_1416310496070_0001_01_000003
>>> 2014-11-18 05:36:37,771 INFO
>>> [org.apache.hadoop.yarn.client.api.async.impl.NMClientAsyncImpl #3]
>>> impl.NMClientAsyncImpl (NMClientAsyncImpl.java:run(531)) - Processing
>>> Event EventType: QUERY_CONTAINER for Container
>>> container_1416310496070_0001_01_000002
>>> 
>>> 
>>> 
>>> On Thu, Nov 20, 2014 at 1:32 PM, Alessandro Negro <alenegro81@yahoo.it>
>>> wrote:
>>> 
>>>> Hi Das,
>>>> I mean as user you run Hadoop yarn resource manager.
>>>> 
>>>> Alessandro
>>>> 
>>>> Il giorno 20/nov/2014, alle ore 19:22, D Adams <dadamszx@gmail.com> ha
>>>> scritto:
>>>> 
>>>> Alessandro,
>>>>     I'm not sure what you mean, should I create a new user on my system
>>>> named 'yarn'? I'm new to both hadoop and giraph, so I'm not sure.
>>>> 
>>>> Tripti,
>>>>     I'll get those logs as soon as I can.
>>>> 
>>>> Thank you both,
>>>> 
>>>> V/r
>>>> Das
>>>> On Nov 20, 2014 3:13 AM, "Alessandro Negro" <alenegro81@yahoo.it> wrote:
>>>> 
>>>>> Hi Tripti,
>>>>> I agree that a more detailed error log could be useful.
>>>>> 
>>>>> Thanks,
>>>>> Alessandro
>>>>> 
>>>>> 
>>>>> 
>>>>> 
>>>>> Il giorno 19/nov/2014, alle ore 15:54, Tripti Singh <tripti@yahoo-inc.co=
>>> m>
>>>>> ha scritto:
>>>>> 
>>>>>> --_000_D092AB9C1CB42triptiyahooinccom_
>>>>>> Content-Type: text/plain; charset=3D"Windows-1252"
>>>>>> Content-Transfer-Encoding: quoted-printable
>>>>>> 
>>>>>> Hi Alessandro,
>>>>>> 
>>>>>> I guess u r talking about the documentation on Giraph webpage which
>>>>> mention=3D
>>>>>> s addition of this new option which is more or less mandatory for yarn
>>>>> base=3D
>>>>>> d profiles.
>>>>>> When I first ran the Giraph on yarn without the proper =3D96yj option,
>>>>> there =3D
>>>>>> was no way I could figure out from the Application/Container logs that
>>>>> this=3D
>>>>>> was the issue.
>>>>>> I think, it=3D92ll be a good idea to have this message in the logs for
>>>>> easy d=3D
>>>>>> ebugging.
>>>>>> 
>>>>>> Thanks,
>>>>>> Tripti.
>>>>>> 
>>>>>> 
>>>>>> From: Alessandro Negro <alenegro81@yahoo.it<mailto:alenegro81@yahoo.it
>>>>>>> 
>>>>>> Reply-To: "user@giraph.apache.org<mailto:user@giraph.apache.org>"
>>>>> <user@gir=3D
>>>>>> aph.apache.org<mailto:user@giraph.apache.org>>
>>>>>> Date: Tuesday, November 18, 2014 at 4:31 PM
>>>>>> To: "user@giraph.apache.org<mailto:user@giraph.apache.org>" <
>>>>> user@giraph.ap=3D
>>>>>> ache.org<mailto:user@giraph.apache.org>>
>>>>>> Subject: Re: Help with Giraph on Yarn
>>>>>> 
>>>>>> Hi Eli,
>>>>>> no I think that the help message is clear enough, generally when I rea=
>>> d
>>>>> =3D93=3D
>>>>>> jar=3D94 I always mean absolute path for jar, but this is a my persona=
>>> l
>>>>> misun=3D
>>>>>> derstanding.
>>>>>> 
>>>>>> Thanks,
>>>>>> Alessandro
>>>>>> 
>>>>>> 
>>>>>> Il giorno 16/nov/2014, alle ore 21:39, Eli Reisman <
>>>>> apache.mailbox@gmail.co=3D
>>>>>> m<mailto:apache.mailbox@gmail.com>> ha scritto:
>>>>>> 
>>>>>> Sounds like you got it figured out since last time I checked this list=
>>> ,
>>>>> sor=3D
>>>>>> ry it was a pain. Feel free to drop a JIRA ticket if we can make help
>>>>> messa=3D
>>>>>> ge etc. for -yj option more clear, there's lots to improve there.
>>>>>> 
>>>>>> On Sat, Nov 8, 2014 at 7:26 AM, Alessandro Negro <alenegro81@yahoo.it
>>>>> <mailt=3D
>>>>>> o:alenegro81@yahoo.it>> wrote:
>>>>>> Hi Tripti,
>>>>>> finally I was able to run the test with success. It was an issue of
>>>>> permiss=3D
>>>>>> ion since I was running as ale not as yarn.
>>>>>> Let me say that now I=3D92m able to run graph examples on Yarn 2.5.1.
>>>>> This is=3D
>>>>>> the final result:
>>>>>> 
>>>>>> 14/11/08 16:24:00 INFO yarn.GiraphYarnClient: Completed Giraph:
>>>>> org.apache.=3D
>>>>>> giraph.examples.SimpleShortestPathsComputation: SUCCEEDED, total
>>>>> running ti=3D
>>>>>> me: 0 minutes, 21 seconds.
>>>>>> 
>>>>>> 
>>>>>> Many thanks for your support,
>>>>>> Alessandro
>>>>>> 
>>>>>> Il giorno 06/nov/2014, alle ore 15:16, Tripti Singh <
>>>>> tripti@yahoo-inc.com<m=3D
>>>>>> ailto:tripti@yahoo-inc.com>> ha scritto:
>>>>>> 
>>>>>> I don't know if u have access to this node. But if u do, u could check
>>>>> if t=3D
>>>>>> he file is indeed there and u have access to it.
>>>>>> 
>>>>>> Sent from my iPhone
>>>>>> 
>>>>>> On 06-Nov-2014, at 6:12 pm, "Alessandro Negro" <alenegro81@yahoo.it
>>>>> <mailto:=3D
>>>>>> alenegro81@yahoo.it>> wrote:
>>>>>> 
>>>>>> You are right it works, but now I receive the following error:
>>>>>> 
>>>>>> SLF4J: Class path contains multiple SLF4J bindings.
>>>>>> SLF4J: Found binding in
>>>>> [jar:file:/private/tmp/hadoop-yarn/nm-local-dir/use=3D
>>>>>> 
>>>>> rcache/ale/appcache/application_1415264041937_0009/filecache/10/giraph-e=
>>> xam=3D
>>>>>> 
>>>>> ples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar!/org/slf4=
>>> j/i=3D
>>>>>> mpl/StaticLoggerBinder.class]
>>>>>> SLF4J: Found binding in
>>>>> [jar:file:/opt/yarn/hadoop-2.5.1/share/hadoop/commo=3D
>>>>>> n/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class=
>>> ]
>>>>>> SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
>>>>> explana=3D
>>>>>> tion.
>>>>>> SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
>>>>>> 2014-11-06 13:15:37.120 java[10158:1803] Unable to load realm info fro=
>>> m
>>>>> SCD=3D
>>>>>> ynamicStore
>>>>>> Exception in thread "pool-4-thread-1" java.lang.IllegalStateException:
>>>>> Coul=3D
>>>>>> d not configure the containerlaunch context for GiraphYarnTasks.
>>>>>> at
>>>>> org.apache.giraph.yarn.GiraphApplicationMaster.getTaskResourceMap(Giraph=
>>> =3D
>>>>>> ApplicationMaster.java:391)
>>>>>> at
>>>>> org.apache.giraph.yarn.GiraphApplicationMaster.access$500(GiraphApplicat=
>>> =3D
>>>>>> ionMaster.java:78)
>>>>>> at
>>>>> org.apache.giraph.yarn.GiraphApplicationMaster$LaunchContainerRunnable.b=
>>> =3D
>>>>>> uildContainerLaunchContext(GiraphApplicationMaster.java:522)
>>>>>> at
>>>>> org.apache.giraph.yarn.GiraphApplicationMaster$LaunchContainerRunnable.r=
>>> =3D
>>>>>> un(GiraphApplicationMaster.java:479)
>>>>>> at
>>>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.jav=
>>> =3D
>>>>>> a:1145)
>>>>>> at
>>>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.ja=
>>> =3D
>>>>>> va:615)
>>>>>> at java.lang.Thread.run(Thread.java:744)
>>>>>> Caused by: java.io.FileNotFoundException: File does not exist:
>>>>> hdfs://hadoo=3D
>>>>>> 
>>>>> p-master:9000/user/yarn/giraph_yarn_jar_cache/application_1415264041937_=
>>> 000=3D
>>>>>> 
>>>>> 9/giraph-examples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.=
>>> jar
>>>>>> at
>>>>> org.apache.hadoop.hdfs.DistributedFileSystem$17.doCall(DistributedFileSy=
>>> =3D
>>>>>> stem.java:1072)
>>>>>> at
>>>>> org.apache.hadoop.hdfs.DistributedFileSystem$17.doCall(DistributedFileSy=
>>> =3D
>>>>>> stem.java:1064)
>>>>>> at
>>>>> org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolv=
>>> =3D
>>>>>> er.java:81)
>>>>>> at
>>>>> org.apache.hadoop.hdfs.DistributedFileSystem.getFileStatus(DistributedFi=
>>> =3D
>>>>>> leSystem.java:1064)
>>>>>> at
>>>>> org.apache.giraph.yarn.YarnUtils.addFileToResourceMap(YarnUtils.java:153=
>>> =3D
>>>>>> )
>>>>>> at
>>>>> org.apache.giraph.yarn.YarnUtils.addFsResourcesToMap(YarnUtils.java:77)
>>>>>> at
>>>>> org.apache.giraph.yarn.GiraphApplicationMaster.getTaskResourceMap(Giraph=
>>> =3D
>>>>>> ApplicationMaster.java:387)
>>>>>> ... 6 more
>>>>>> 
>>>>>> 
>>>>>> That justify the other error I receive in the task:
>>>>>> Could not find or load main class org.apache.giraph.yarn.GiraphYarnTas=
>>> k
>>>>>> 
>>>>>> Thanks,
>>>>>> 
>>>>>> Il giorno 06/nov/2014, alle ore 13:07, Tripti Singh <
>>>>> tripti@yahoo-inc.com<m=3D
>>>>>> ailto:tripti@yahoo-inc.com>> ha scritto:
>>>>>> 
>>>>>> Why r u adding two jars? Example jar ideally contains core library so
>>>>> every=3D
>>>>>> thing should be available with just one example jar included
>>>>>> 
>>>>>> Sent from my iPhone
>>>>>> 
>>>>>> On 06-Nov-2014, at 4:33 pm, "Alessandro Negro" <alenegro81@yahoo.it
>>>>> <mailto:=3D
>>>>>> alenegro81@yahoo.it>> wrote:
>>>>>> 
>>>>>> Hi,
>>>>>> now it seems better, I need to add:
>>>>>> 
>>>>>> 
>>>>> giraph-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar,giraph-=
>>> exa=3D
>>>>>> mples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar
>>>>>> 
>>>>>> 
>>>>>> Now it seems that after a lot of cycle it fail with this error:
>>>>>> 
>>>>>> Could not find or load main class org.apache.giraph.yarn.GiraphYarnTas=
>>> k
>>>>>> 
>>>>>> But in this case the error appear in task-3-stderr.log  not in
>>>>> gam-stderr.l=3D
>>>>>> og where there is the following error:
>>>>>> 
>>>>>> LF4J: Class path contains multiple SLF4J bindings.
>>>>>> SLF4J: Found binding in
>>>>> [jar:file:/private/tmp/hadoop-yarn/nm-local-dir/use=3D
>>>>>> 
>>>>> rcache/ale/appcache/application_1415264041937_0006/filecache/12/giraph-1=
>>> .1.=3D
>>>>>> 
>>>>> 0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar!/org/slf4j/impl/St=
>>> ati=3D
>>>>>> cLoggerBinder.class]
>>>>>> SLF4J: Found binding in
>>>>> [jar:file:/private/tmp/hadoop-yarn/nm-local-dir/use=3D
>>>>>> 
>>>>> rcache/ale/appcache/application_1415264041937_0006/filecache/10/giraph-e=
>>> xam=3D
>>>>>> 
>>>>> ples-1.1.0-SNAPSHOT-for-hadoop-2.5.1-jar-with-dependencies.jar!/org/slf4=
>>> j/i=3D
>>>>>> mpl/StaticLoggerBinder.class]
>>>>>> SLF4J: Found binding in
>>>>> [jar:file:/opt/yarn/hadoop-2.5.1/share/hadoop/commo=3D
>>>>>> n/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class=
>>> ]
>>>>>> SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
>> 
> 
> 
> 


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