giraph-user mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From Silvio Di gregorio <silvio.digrego...@gmail.com>
Subject Re: connected components example in giraph 1.0
Date Mon, 07 Oct 2013 11:18:53 GMT
I think now my issue is another, thanks to all.


java.lang.IllegalStateException: run: Caught an unrecoverable
exception waitFor: ExecutionException occurred while waiting for
org.apache.giraph.utils.ProgressableUtils$FutureWaitable@73a01e8a
	at org.apache.giraph.graph.GraphMapper.run(GraphMapper.java:102)
	......
Caused by: java.lang.IllegalStateException: waitFor:
ExecutionException occurred while waiting for
org.apache.giraph.utils.ProgressableUtils$FutureWaitable@73a01e8a
	at org.apache.giraph.utils.ProgressableUtils.waitFor(ProgressableUtils.java:151)
	... 7 more
Caused by: java.util.concurrent.ExecutionException:
java.lang.OutOfMemoryError: *Java heap space*
	at org.apache.giraph.utils.ProgressableUtils.waitFor(ProgressableUtils.java:143)
	... 13 more



2013/10/7 Claudio Martella <claudio.martella@gmail.com>

> OK, thanks.
>
> I really have to push that patch in.
>
>
> On Mon, Oct 7, 2013 at 12:17 PM, Silvio Di gregorio <
> silvio.digregorio@gmail.com> wrote:
>
>> yes i do,
>> i have seen this in your post in:
>> http://www.mail-archive.com/user@giraph.apache.org/msg00957.html
>>
>> excuse me if  i had checked in the mail-achive first I would have avoided
>> the last post.
>>
>> Now zk issue are resolved.
>>
>>
>> 2013/10/7 Claudio Martella <claudio.martella@gmail.com>
>>
>>> Can you try applying this one first?
>>>
>>> http://www.mail-archive.com/user@giraph.apache.org/msg00945/check.diff
>>>
>>>
>>> On Mon, Oct 7, 2013 at 8:40 AM, Silvio Di gregorio <
>>> silvio.digregorio@gmail.com> wrote:
>>>
>>>>
>>>>
>>>> *As i said i have builded*
>>>>
>>>>
>>>> *giraph-examples-1.0.0-for-hadoop-2.0.0-cdh4.1.2-jar-with-dependencies.jar*
>>>>
>>>>
>>>> *for cdh4, successfully. The job start to monitoring the success rate:*
>>>>
>>>>
>>>> *13/10/07 08:28:45 INFO mapred.JobClient:  map 0% reduce 0%*
>>>>
>>>>
>>>> *but then*
>>>>
>>>>
>>>> *Error running child
>>>> java.lang.IllegalStateException: run: Caught an unrecoverable exception java.io.FileNotFoundException:
File _bsp/_defaultZkManagerDir/job_201309181636_0678/_zkServer does not exist.
>>>> *
>>>>
>>>>
>>>> *...*
>>>>
>>>>
>>>>
>>>> *Caused by: java.lang.RuntimeException: java.io.FileNotFoundException: File
_bsp/_defaultZkManagerDir/job_201309181636_0678/_zkServer does not exist.*
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> 2013/10/5 Silvio Di gregorio <silvio.digregorio@gmail.com>
>>>>
>>>>> I ha ve build w/ hadoop_cdh4.1.2 parameter.
>>>>> Something is changed, monday i report the result. Now the farm is
>>>>> closed.
>>>>> Il giorno 05/ott/2013 14:06, "Claudio Martella" <
>>>>> claudio.martella@gmail.com> ha scritto:
>>>>>
>>>>>  Oh, right, -vof is in trunk. Anyway it looks like you built giraph
>>>>>> for the wrong profile. You mentioned you're running on 2.0, but your
giraph
>>>>>> is built for 0.20.203. try building with a profile for your hadoop
>>>>>> version.
>>>>>>
>>>>>>
>>>>>> On Fri, Oct 4, 2013 at 2:35 PM, Silvio Di gregorio <
>>>>>> silvio.digregorio@gmail.com> wrote:
>>>>>>
>>>>>>>
>>>>>>> org.apache.commons.cli.UnrecognizedOptionException: Unrecognized
>>>>>>> option: -vof
>>>>>>>
>>>>>>> in 1.0 version is
>>>>>>>  -of,--outputFormat <arg>               Vertex output format
>>>>>>>  -op,--outputPath <arg>                 Vertex output path
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> 2013/10/4 Claudio Martella <claudio.martella@gmail.com>
>>>>>>>
>>>>>>>> did you try the argument (-vof) i suggested?
>>>>>>>>
>>>>>>>>
>>>>>>>> On Fri, Oct 4, 2013 at 2:13 PM, Silvio Di gregorio <
>>>>>>>> silvio.digregorio@gmail.com> wrote:
>>>>>>>>
>>>>>>>>>
>>>>>>>>> i've specified  -of
>>>>>>>>>  org.apache.giraph.io.formats.IdWithValueTextOutputFormat
>>>>>>>>>
>>>>>>>>> but the same error was produced
>>>>>>>>>
>>>>>>>>> Exception in thread "main" java.lang.IncompatibleClassChangeError:
>>>>>>>>> Found interface org.apache.hadoop.mapreduce.JobContext,
but class was
>>>>>>>>> expected
>>>>>>>>>         at
>>>>>>>>> org.apache.giraph.bsp.BspOutputFormat.checkOutputSpecs(BspOutputFormat.java:43)
>>>>>>>>>         at
>>>>>>>>> org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:984)
>>>>>>>>>         at
>>>>>>>>> org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:945)
>>>>>>>>>         at java.security.AccessController.doPrivileged(Native
>>>>>>>>> Method)
>>>>>>>>>         at javax.security.auth.Subject.doAs(Subject.java:396)
>>>>>>>>>         at
>>>>>>>>> org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1408)
>>>>>>>>>         at
>>>>>>>>> org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:945)
>>>>>>>>>         at org.apache.hadoop.mapreduce.Job.submit(Job.java:566)
>>>>>>>>>         at
>>>>>>>>> org.apache.hadoop.mapreduce.Job.waitForCompletion(Job.java:596)
>>>>>>>>>         at org.apache.giraph.job.GiraphJob.run(GiraphJob.java:237)
>>>>>>>>>         at org.apache.giraph.GiraphRunner.run(GiraphRunner.java:94)
>>>>>>>>>         at
>>>>>>>>> org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
>>>>>>>>>         at
>>>>>>>>> org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:84)
>>>>>>>>>         at
>>>>>>>>> org.apache.giraph.GiraphRunner.main(GiraphRunner.java:124)
>>>>>>>>>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
>>>>>>>>> Method)
>>>>>>>>>         at
>>>>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>>>>>         at
>>>>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>>>>>         at java.lang.reflect.Method.invoke(Method.java:597)
>>>>>>>>>         at org.apache.hadoop.util.RunJar.main(RunJar.java:208)
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> 2013/10/4 Claudio Martella <claudio.martella@gmail.com>
>>>>>>>>>
>>>>>>>>>> Hi,
>>>>>>>>>>
>>>>>>>>>> you need to specify the vertex outputformat class
(-vof option),
>>>>>>>>>> e.g. org.apache.giraph.io.formats.IdWithValueTextOutputFormat.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Fri, Oct 4, 2013 at 1:06 PM, Silvio Di gregorio
<
>>>>>>>>>> silvio.digregorio@gmail.com> wrote:
>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> Hi,
>>>>>>>>>>>
>>>>>>>>>>> I hope I have sent to the right address.
>>>>>>>>>>>
>>>>>>>>>>> i have a graph (directed and unweighted) stored
in hdfs like a
>>>>>>>>>>> adjacency list (140Milions of edges 6Milions
of vertex)
>>>>>>>>>>>
>>>>>>>>>>> node<tab>neighbors
>>>>>>>>>>>
>>>>>>>>>>> 23   2   1    3    4    3
>>>>>>>>>>>
>>>>>>>>>>> 1 999 99923 909 .......
>>>>>>>>>>>
>>>>>>>>>>> ......
>>>>>>>>>>>
>>>>>>>>>>> hadoop version Hadoop 2.0.0-cdh4.3.0 - java 1.6
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> I have executed the giraph-1.0 connected components
example, in
>>>>>>>>>>> this fashion
>>>>>>>>>>>
>>>>>>>>>>>> > hadoop jar /usr/local/giraph/giraph-examples/target/giraph-
>>>>>>>>>>>> examples-1.0.0-for-hadoop-0.20.203.0-jar-with-dependencies.jar
>>>>>>>>>>>> org.apache.giraph.GiraphRunner org.apache.giraph.examples.ConnectedComponentsVertex
>>>>>>>>>>>> -vif org.apache.giraph.io.formats.IntIntNullTextInputFormat
>>>>>>>>>>>> -vip /user/hdfs/lista_adj_txt -op connectedgiraph
--workers 4
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> and then fail with:
>>>>>>>>>>>
>>>>>>>>>>> 13/10/04 09:28:29 INFO utils.ConfigurationUtils:
No edge input
>>>>>>>>>>> format specified. Ensure your InputFormat does
not require one.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> 13/10/04 09:28:29 INFO utils.ConfigurationUtils:
No output
>>>>>>>>>>> format specified. Ensure your OutputFormat does
not require one.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> 13/10/04 09:28:30 INFO job.GiraphJob: run: Since
checkpointing
>>>>>>>>>>> is disabled (default), do not allow any task
retries (setting
>>>>>>>>>>> mapred.map.max.attempts = 0, old value = 4)
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> 13/10/04 09:28:31 WARN mapred.JobClient: Use
>>>>>>>>>>> GenericOptionsParser for parsing the arguments.
Applications should
>>>>>>>>>>> implement Tool for the same.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> 13/10/04 09:28:31 INFO mapred.JobClient: Cleaning
up the staging
>>>>>>>>>>> area hdfs://
>>>>>>>>>>> srv-bigdata-dev-01.int.sose.it:8020/user/hdfs/.staging/job_201309181636_0535
>>>>>>>>>>>
>>>>>>>>>>> Exception in thread "main"
>>>>>>>>>>> java.lang.IncompatibleClassChangeError: Found
interface
>>>>>>>>>>> org.apache.hadoop.mapreduce.JobContext, but class
was expected
>>>>>>>>>>>
>>>>>>>>>>>         at
>>>>>>>>>>> org.apache.giraph.bsp.BspOutputFormat.checkOutputSpecs(BspOutputFormat.java:43)
>>>>>>>>>>>
>>>>>>>>>>>         ......
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> Thanks in advance
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>>    Claudio Martella
>>>>>>>>>>    claudio.martella@gmail.com
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>>    Claudio Martella
>>>>>>>>    claudio.martella@gmail.com
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>>    Claudio Martella
>>>>>>    claudio.martella@gmail.com
>>>>>>
>>>>>
>>>>
>>>
>>>
>>> --
>>>    Claudio Martella
>>>    claudio.martella@gmail.com
>>>
>>
>>
>
>
> --
>    Claudio Martella
>    claudio.martella@gmail.com
>

Mime
View raw message