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From Jeff Storey <storey.j...@gmail.com>
Subject Datanucleus NullPointerException when using HiveGiraphRunner
Date Thu, 24 Oct 2013 21:55:47 GMT
I'm submitting a giraph job that through the HiveGiraphRunner, and the
mapper fails with the error below from the datanucleus code.

I'm using hadoop 0.23 and hive 0.8 because the giraph-hive code (built
using the facebook profile) specifies that version. In similar posts, I've
seen that people suggested that aspectj being on the classpath twice was
the issue, but I verified that is not the case here.

This error isn't giving me much information - is there anything more I can
do to diagnose this?

Thanks,
Jeff

Caused by: javax.jdo.JDOFatalInternalException: Unexpected exception caught.
NestedThrowables:
java.lang.reflect.InvocationTargetException
	at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1186)
	at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:803)
	at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:698)
	at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:262)
	at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:291)
	at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:224)
	at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:199)
	at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:62)
	at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:117)
	at org.apache.hadoop.hive.metastore.RetryingRawStore.<init>(RetryingRawStore.java:62)
	at org.apache.hadoop.hive.metastore.RetryingRawStore.getProxy(RetryingRawStore.java:71)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:413)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:401)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:439)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:325)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:285)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:53)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:58)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4102)
	at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:121)
	at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:104)
	at com.facebook.hiveio.common.HiveMetastores.createfromReflection(HiveMetastores.java:146)
	at com.facebook.hiveio.common.HiveMetastores.create(HiveMetastores.java:109)
	at com.facebook.hiveio.schema.HiveTableSchemas$2.idempotentTask(HiveTableSchemas.java:127)
	at com.facebook.hiveio.schema.HiveTableSchemas$2.idempotentTask(HiveTableSchemas.java:124)
	at com.facebook.hiveio.common.BackoffRetryTask.run(BackoffRetryTask.java:96)
	... 19 more
Caused by: java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at javax.jdo.JDOHelper$16.run(JDOHelper.java:1958)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.jdo.JDOHelper.invoke(JDOHelper.java:1953)
	at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1159)
	... 44 more
Caused by: java.lang.NullPointerException
	at org.datanucleus.plugin.NonManagedPluginRegistry.registerBundle(NonManagedPluginRegistry.java:443)
	at org.datanucleus.plugin.NonManagedPluginRegistry.registerBundle(NonManagedPluginRegistry.java:355)
	at org.datanucleus.plugin.NonManagedPluginRegistry.registerExtensions(NonManagedPluginRegistry.java:215)
	at org.datanucleus.plugin.NonManagedPluginRegistry.registerExtensionPoints(NonManagedPluginRegistry.java:156)
	at org.datanucleus.plugin.PluginManager.registerExtensionPoints(PluginManager.java:82)
	at org.datanucleus.OMFContext.<init>(OMFContext.java:156)
	at org.datanucleus.OMFContext.<init>(OMFContext.java:137)
	at org.datanucleus.ObjectManagerFactoryImpl.initialiseOMFContext(ObjectManagerFactoryImpl.java:132)
	at org.datanucleus.jdo.JDOPersistenceManagerFactory.initialiseProperties(JDOPersistenceManagerFactory.java:363)
	at org.datanucleus.jdo.JDOPersistenceManagerFactory.<init>(JDOPersistenceManagerFactory.java:307)
	at org.datanucleus.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:255)
	at org.datanucleus.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:182)
	... 52 more

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