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From Avery Ching <ach...@apache.org>
Subject Re: more concurrency issues with requests management?
Date Tue, 19 Feb 2013 23:18:40 GMT
Try these to start:

-XX:+PrintGC -XX:+PrintGCDateStamps -XX:+PrintGCDetails 
-XX:+PrintGCTimeStamps -verbose:gc

On 2/19/13 3:04 PM, Claudio Martella wrote:
> Looking at the second line of the logs, it does not look like the case, but
> it could be. do you have any suggestion for the flags in particular? I'm
> running with -XX:+HeapDumpOnOutOfMemoryError  now, and I don't get any dump.
>
> It could be the case, but the behavior is quite consistent currently, I'd
> get a Child error/OOM pretty soon in these cases.
>
>
> On Tue, Feb 19, 2013 at 11:45 PM, Avery Ching <aching@apache.org> wrote:
>
>> Can you add GC flags?  Perhaps you are running into full GCs...
>>
>>
>> On 2/19/13 1:45 PM, Claudio Martella wrote:
>>
>>> I have not investigated further yet, but this does not look connected to
>>> ZK, but mostly to some concurrency on the queues. The number of requests
>>> stays to 29...
>>>
>>>
>>> On Tue, Feb 19, 2013 at 9:58 PM, Sebastian Schelter <ssc@apache.org>
>>> wrote:
>>>
>>>   For me, Giraph on Hadoop 1.0.4 runs into some kind of deadlock after the
>>>> input was loaded when using it with 200 workers on a billion-scale
>>>> graph....
>>>>
>>>> I tried several versions of zookeeper, but nothing helped.
>>>>
>>>> Best,
>>>> Sebastian
>>>>
>>>>
>>>> On 19.02.2013 21:55, Claudio Martella wrote:
>>>>
>>>>> I'm running PR with trunk on yahoo webgraph across 528 workers and I
get
>>>>> the workers hanging at the flushing:
>>>>>
>>>>> 2013-02-19 21:40:07,187 INFO org.apache.giraph.graph.**ComputeCallable:
>>>>>
>>>> call:
>>>>
>>>>> Computation took 28.386961 secs for 95 partitions on superstep 0.
>>>>>
>>>>    Flushing
>>>>
>>>>> started
>>>>> 2013-02-19 21:40:07,604 INFO org.apache.giraph.worker.**
>>>>> BspServiceWorker:
>>>>> finishSuperstep: Waiting on all requests, superstep 0 Memory
>>>>> (free/total/max) = 5993.42M / 8661.44M / 14346.69M
>>>>> 2013-02-19 21:40:07,605 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 558 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 6.4758, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0003, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 27.083
>>>>> 2013-02-19 21:40:26,717 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 39 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 3.7965, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0.0001, MBytesSent = 175.3834, MBytesReceived = 0.0068, ave sent req
>>>>>
>>>> MBytes
>>>>
>>>>> = 0.2998, ave received req MBytes = 0, secs waited = 46.195
>>>>> 2013-02-19 21:40:32,248 INFO
>>>>> org.apache.giraph.comm.netty.**handler.RequestDecoder: decode: Server
>>>>>
>>>> window
>>>>
>>>>> metrics MBytes/sec sent = 0.0002, MBytes/sec received = 3.9824,
>>>>>
>>>> MBytesSent
>>>>
>>>>> = 0.0066, MBytesReceived = 155.4787, ave sent req MBytes = 0, ave
>>>>>
>>>> received
>>>>
>>>>> req MBytes = 0.0155, secs waited = 39.04
>>>>> 2013-02-19 21:40:42,041 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 36 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 2.8509, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0.0001, MBytesSent = 175.3834, MBytesReceived = 0.0068, ave sent req
>>>>>
>>>> MBytes
>>>>
>>>>> = 0.2998, ave received req MBytes = 0, secs waited = 61.519
>>>>> 2013-02-19 21:41:07,456 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 2.0174, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0.0001, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req
>>>>>
>>>> MBytes
>>>>
>>>>> = 0.2998, ave received req MBytes = 0, secs waited = 86.933
>>>>> 2013-02-19 21:41:22,456 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 1.7205, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0.0001, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req
>>>>>
>>>> MBytes
>>>>
>>>>> = 0.2998, ave received req MBytes = 0, secs waited = 101.934
>>>>> 2013-02-19 21:41:37,457 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 1.4998, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0.0001, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req
>>>>>
>>>> MBytes
>>>>
>>>>> = 0.2998, ave received req MBytes = 0, secs waited = 116.935
>>>>> 2013-02-19 21:41:52,458 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 1.3293, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0.0001, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req
>>>>>
>>>> MBytes
>>>>
>>>>> = 0.2998, ave received req MBytes = 0, secs waited = 131.936
>>>>> 2013-02-19 21:42:22,459 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 1.083, MBytes/sec received
>>>>> =
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 161.937
>>>>> 2013-02-19 21:42:37,460 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.9912, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 176.938
>>>>> 2013-02-19 21:43:07,461 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.8475, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 206.939
>>>>> 2013-02-19 21:43:37,462 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.7402, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 236.94
>>>>> 2013-02-19 21:43:52,463 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.6961, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 251.941
>>>>> 2013-02-19 21:44:07,464 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.657, MBytes/sec received
>>>>> =
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 266.942
>>>>> 2013-02-19 21:44:37,465 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.5906, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 296.943
>>>>> 2013-02-19 21:45:07,466 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.5364, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 326.944
>>>>> 2013-02-19 21:45:22,467 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.5129, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 341.945
>>>>> 2013-02-19 21:45:37,468 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.4913, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 356.946
>>>>> 2013-02-19 21:46:07,469 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.4532, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 386.947
>>>>> 2013-02-19 21:46:22,470 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.4363, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 401.948
>>>>> 2013-02-19 21:46:52,471 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.406, MBytes/sec received
>>>>> =
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 431.949
>>>>> 2013-02-19 21:47:07,472 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.3924, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 446.95
>>>>> 2013-02-19 21:47:37,473 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.3677, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 476.951
>>>>> 2013-02-19 21:48:07,474 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.346, MBytes/sec received
>>>>> =
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 506.952
>>>>> 2013-02-19 21:48:22,475 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.336, MBytes/sec received
>>>>> =
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 521.953
>>>>> 2013-02-19 21:48:52,476 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.3177, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 551.954
>>>>> 2013-02-19 21:49:07,477 INFO org.apache.giraph.comm.netty.**
>>>>> NettyClient:
>>>>> waitSomeRequests: Waiting interval of 15000 msecs, 29 open requests,
>>>>> waiting for it to be <= 0, MBytes/sec sent = 0.3093, MBytes/sec received
>>>>>
>>>> =
>>>>
>>>>> 0, MBytesSent = 175.3834, MBytesReceived = 0.0069, ave sent req MBytes
=
>>>>> 0.2998, ave received req MBytes = 0, secs waited = 566.955
>>>>>
>>>>> It looks similar to the problem we had earlier with concurrency.
>>>>>
>>>>> Are you guys experiencing something similar at large-scale?
>>>>>
>>>>>
>


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