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From ANDREA SPINA <74...@studenti.unimore.it>
Subject Flink java.io.FileNotFoundException Exception with Peel Framework
Date Tue, 28 Jun 2016 09:57:27 GMT
Hi everyone,

I am running some Flink experiments with Peel benchmark
http://peel-framework.org/ and I am struggling with exceptions: the
environment is a 25-nodes cluster, 16 cores per nodes. The dataset is
~80GiB and is located on Hdfs 2.7.1.

At the beginning I tried with 400 as degree of parallelism and with the
following configuration:

jobmanager.rpc.address = ${runtime.hostname}
akka.log.lifecycle.events = ON
akka.ask.timeout = 300s
jobmanager.rpc.port = 6002

jobmanager.heap.mb = 1024
jobmanager.web.port = 6004

taskmanager.heap.mb = 28672
taskmanager.memory.fraction = 0.7
taskmanager.network.numberOfBuffers = 32768
taskmanager.network.bufferSizeInBytes = 16384
taskmanager.tmp.dirs =
"/data/1/peel/flink/tmp:/data/2/peel/flink/tmp:/data/3/peel/flink/tmp:/data/4/peel/flink/tmp"
taskmanager.debug.memory.startLogThread = true

the following exception will raise

Caused by: java.io.IOException: Insufficient number of network buffers:
required 350, but only 317 available. The total number of network buffers
is currently set to 32768. You can increase this number by setting the
configuration key 'taskmanager.network.numberOfBuffers'.
        at
org.apache.flink.runtime.io.network.buffer.NetworkBufferPool.createBufferPool(NetworkBufferPool.java:196)
        at
org.apache.flink.runtime.io.network.NetworkEnvironment.registerTask(NetworkEnvironment.java:327)
        at org.apache.flink.runtime.taskmanager.Task.run(Task.java:469)
        at java.lang.Thread.run(Thread.java:745)

So I tried different solutions, both with increasing numberOfBuffers (Max
value tried 98304) or decreasing the degreeOfParallelism (Min value tried
300) and testing those configs with a dummy dataset seems to solve the
number of buffers issue.
But In each case with the 80GiB dataset now I struggle with a new
exception; the following with a degree of parallelism = 300 and
numberOfBuffers = 32768

org.apache.flink.client.program.ProgramInvocationException: The program
execution failed: Job execution failed.
at org.apache.flink.client.program.Client.runBlocking(Client.java:381)
at org.apache.flink.client.program.Client.runBlocking(Client.java:355)
at org.apache.flink.client.program.Client.runBlocking(Client.java:315)
at
org.apache.flink.client.program.ContextEnvironment.execute(ContextEnvironment.java:60)
at
org.apache.flink.api.scala.ExecutionEnvironment.execute(ExecutionEnvironment.scala:652)
at
dima.tu.berlin.benchmark.flink.mlr.FlinkSLRTrainCommon$.main(FlinkSLRTrainCommon.scala:110)
at
dima.tu.berlin.benchmark.flink.mlr.FlinkSLRTrainCommon.main(FlinkSLRTrainCommon.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.apache.flink.client.program.PackagedProgram.callMainMethod(PackagedProgram.java:505)
at
org.apache.flink.client.program.PackagedProgram.invokeInteractiveModeForExecution(PackagedProgram.java:403)
at org.apache.flink.client.program.Client.runBlocking(Client.java:248)
at
org.apache.flink.client.CliFrontend.executeProgramBlocking(CliFrontend.java:866)
at org.apache.flink.client.CliFrontend.run(CliFrontend.java:333)
at
org.apache.flink.client.CliFrontend.parseParameters(CliFrontend.java:1192)
at org.apache.flink.client.CliFrontend.main(CliFrontend.java:1243)
Caused by: org.apache.flink.runtime.client.JobExecutionException: Job
execution failed.
at
org.apache.flink.runtime.jobmanager.JobManager$$anonfun$handleMessage$1$$anonfun$applyOrElse$7.apply$mcV$sp(JobManager.scala:717)
at
org.apache.flink.runtime.jobmanager.JobManager$$anonfun$handleMessage$1$$anonfun$applyOrElse$7.apply(JobManager.scala:663)
at
org.apache.flink.runtime.jobmanager.JobManager$$anonfun$handleMessage$1$$anonfun$applyOrElse$7.apply(JobManager.scala:663)
at
scala.concurrent.impl.Future$PromiseCompletingRunnable.liftedTree1$1(Future.scala:24)
at
scala.concurrent.impl.Future$PromiseCompletingRunnable.run(Future.scala:24)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:41)
at
akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:401)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at
scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.pollAndExecAll(ForkJoinPool.java:1253)
at
scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1346)
at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at
scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Caused by: java.lang.RuntimeException: Emitting the record caused an I/O
exception: Channel to path
'/data/3/peel/flink/tmp/flink-io-3a97d62c-ada4-44f1-ab72-dd018386f9aa/79305169d69f7e8b361a175af87353fa.channel'
could not be opened.
at
org.apache.flink.runtime.operators.shipping.OutputCollector.collect(OutputCollector.java:69)
at
org.apache.flink.runtime.operators.chaining.ChainedMapDriver.collect(ChainedMapDriver.java:78)
at org.apache.flink.runtime.operators.MapDriver.run(MapDriver.java:97)
at org.apache.flink.runtime.operators.BatchTask.run(BatchTask.java:480)
at org.apache.flink.runtime.operators.BatchTask.invoke(BatchTask.java:345)
at org.apache.flink.runtime.taskmanager.Task.run(Task.java:559)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.io.IOException: Channel to path
'/data/3/peel/flink/tmp/flink-io-3a97d62c-ada4-44f1-ab72-dd018386f9aa/79305169d69f7e8b361a175af87353fa.channel'
could not be opened.
at
org.apache.flink.runtime.io.disk.iomanager.AbstractFileIOChannel.<init>(AbstractFileIOChannel.java:61)
at
org.apache.flink.runtime.io.disk.iomanager.AsynchronousFileIOChannel.<init>(AsynchronousFileIOChannel.java:86)
at
org.apache.flink.runtime.io.disk.iomanager.AsynchronousBufferFileWriter.<init>(AsynchronousBufferFileWriter.java:31)
at
org.apache.flink.runtime.io.disk.iomanager.IOManagerAsync.createBufferFileWriter(IOManagerAsync.java:257)
at
org.apache.flink.runtime.io.network.partition.SpillableSubpartition.releaseMemory(SpillableSubpartition.java:151)
at
org.apache.flink.runtime.io.network.partition.ResultPartition.releaseMemory(ResultPartition.java:366)
at
org.apache.flink.runtime.io.network.buffer.LocalBufferPool.requestBuffer(LocalBufferPool.java:159)
at
org.apache.flink.runtime.io.network.buffer.LocalBufferPool.requestBufferBlocking(LocalBufferPool.java:133)
at
org.apache.flink.runtime.io.network.api.writer.RecordWriter.emit(RecordWriter.java:92)
at
org.apache.flink.runtime.operators.shipping.OutputCollector.collect(OutputCollector.java:65)
... 6 more
Caused by: java.io.FileNotFoundException:
/data/3/peel/flink/tmp/flink-io-3a97d62c-ada4-44f1-ab72-dd018386f9aa/79305169d69f7e8b361a175af87353fa.channel
(No such file or directory)
at java.io.RandomAccessFile.open0(Native Method)
at java.io.RandomAccessFile.open(RandomAccessFile.java:316)
at java.io.RandomAccessFile.<init>(RandomAccessFile.java:243)
at java.io.RandomAccessFile.<init>(RandomAccessFile.java:124)
at
org.apache.flink.runtime.io.disk.iomanager.AbstractFileIOChannel.<init>(AbstractFileIOChannel.java:57)
... 15 more

here
<https://dl.dropboxusercontent.com/u/78598929/flink-hadoop-jobmanager-0-cloud-11.log>
the
related jobmanager full log. I can't figure out a solution.

Thank you and have a nice day.

-- 
*Andrea Spina*
Guest student at DIMA, TU Berlin
N.Tessera: *74598*
MAT: *89369*
*Ingegneria Informatica* *[LM] *(D.M. 270)

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