flink-user mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From Maximilian Michels <...@apache.org>
Subject Re: Flink - Avro - AvroTypeInfo issue - Index out of bounds exception
Date Tue, 14 Apr 2015 09:43:44 GMT
Hi Filip,

I think your issue is best dealt with on the user mailing list.
Unfortunately, you can't use attachments on the mailing lists. So if you
want to post a screenshot you'll have to upload it somewhere else (e.g.
http://imgur.com/).

I can confirm your error. Would you mind using the 0.9.0-milestone release?
Just change the Flink version in the Maven pom.xml to 0.9.0-milestone-1.
Your example works with this version.

Best regards,
Max


On Mon, Apr 13, 2015 at 6:42 PM, Filip Łęczycki <filipleczycki@gmail.com>
wrote:

> Hi
>
> I have an issue while running the following line while usig flink v 0.8.1
> (:
>     val asdf = new AvroTypeInfo[AlignmentRecord](classOf[AlignmentRecord])
>
> Alignment record belongs to the package :
> org.bdgenomics.formats.avro.AlignmentRecord
>
> http://mvnrepository.com/artifact/org.bdgenomics.bdg-formats/bdg-formats/0.4.0
>
> While trying to run I am receivng following exception:
>
> Exception in thread "main" java.lang.IndexOutOfBoundsException
> at
> org.apache.flink.api.java.typeutils.PojoTypeInfo.getPojoFieldAt(PojoTypeInfo.java:178)
> at
> org.apache.flink.api.java.typeutils.AvroTypeInfo.generateFieldsFromAvroSchema(AvroTypeInfo.java:52)
> at
> org.apache.flink.api.java.typeutils.AvroTypeInfo.<init>(AvroTypeInfo.java:38)
> at flinkTest.FlinkBAMReader$.main(FlinkBAMReader.scala:74)
>
> While debugging I have noticed that the generated AvroTypeInfo class has a
> fields array with 42 elements, while the totalFIelds property has value 52
> (please find screenshot attached) which seems to be the cause of the
> exception. Could you please help me o determine what may be the issue with
> the parser? Is this some bug in AvroTypeInfo class or the AlignmentRecord
> class is somehow corrupted?
>
> Best Regards/Pozdrawiam,
> Filip Łęczycki
>
>
>

Mime
View raw message