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From vasia <...@git.apache.org>
Subject [GitHub] flink pull request: [FLINK-3780] [gelly] Jaccard Similarity
Date Thu, 19 May 2016 14:59:35 GMT
Github user vasia commented on a diff in the pull request:

    https://github.com/apache/flink/pull/1980#discussion_r63894348
  
    --- Diff: flink-libraries/flink-gelly/src/main/java/org/apache/flink/graph/library/similarity/JaccardIndex.java
---
    @@ -0,0 +1,462 @@
    +/*
    + * Licensed to the Apache Software Foundation (ASF) under one
    + * or more contributor license agreements.  See the NOTICE file
    + * distributed with this work for additional information
    + * regarding copyright ownership.  The ASF licenses this file
    + * to you under the Apache License, Version 2.0 (the
    + * "License"); you may not use this file except in compliance
    + * with the License.  You may obtain a copy of the License at
    + *
    + *     http://www.apache.org/licenses/LICENSE-2.0
    + *
    + * Unless required by applicable law or agreed to in writing, software
    + * distributed under the License is distributed on an "AS IS" BASIS,
    + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    + * See the License for the specific language governing permissions and
    + * limitations under the License.
    + */
    +
    +package org.apache.flink.graph.library.similarity;
    +
    +import org.apache.flink.api.common.ExecutionConfig;
    +import org.apache.flink.api.common.functions.FlatMapFunction;
    +import org.apache.flink.api.common.functions.GroupReduceFunction;
    +import org.apache.flink.api.common.operators.Order;
    +import org.apache.flink.api.java.DataSet;
    +import org.apache.flink.api.java.functions.FunctionAnnotation;
    +import org.apache.flink.api.java.tuple.Tuple2;
    +import org.apache.flink.api.java.tuple.Tuple3;
    +import org.apache.flink.api.java.tuple.Tuple4;
    +import org.apache.flink.graph.Edge;
    +import org.apache.flink.graph.Graph;
    +import org.apache.flink.graph.GraphAlgorithm;
    +import org.apache.flink.graph.asm.degree.annotate.undirected.EdgeTargetDegree;
    +import org.apache.flink.graph.library.similarity.JaccardIndex.Result;
    +import org.apache.flink.graph.utils.Murmur3_32;
    +import org.apache.flink.types.CopyableValue;
    +import org.apache.flink.types.IntValue;
    +import org.apache.flink.types.LongValue;
    +import org.apache.flink.util.Collector;
    +import org.apache.flink.util.Preconditions;
    +
    +import java.util.ArrayList;
    +import java.util.List;
    +
    +/**
    + * The Jaccard Index measures the similarity between vertex neighborhoods.
    + * Scores range from 0.0 (no common neighbors) to 1.0 (all neighbors are common).
    + * <br/>
    + * This implementation produces similarity scores for each pair of vertices
    + * in the graph with at least one common neighbor; equivalently, this is the
    + * set of all non-zero Jaccard Similarity coefficients.
    + * <br/>
    + * The input graph must be a simple, undirected graph containing no duplicate
    + * edges or self-loops.
    + *
    + * @param <K> graph ID type
    + * @param <VV> vertex value type
    + * @param <EV> edge value type
    + */
    +public class JaccardIndex<K extends CopyableValue<K>, VV, EV>
    +implements GraphAlgorithm<K, VV, EV, DataSet<Result<K>>> {
    +
    +	public static final int DEFAULT_GROUP_SIZE = 64;
    +
    +	// Optional configuration
    +	private int groupSize = DEFAULT_GROUP_SIZE;
    +
    +	private boolean unboundedScores = true;
    +
    +	private int minimumScoreNumerator = 0;
    +
    +	private int minimumScoreDenominator = 1;
    +
    +	private int maximumScoreNumerator = 1;
    +
    +	private int maximumScoreDenominator = 0;
    +
    +	private int littleParallelism = ExecutionConfig.PARALLELISM_UNKNOWN;
    +
    +	/**
    +	 * Override the default group size for the quadratic expansion of neighbor
    +	 * pairs. Small groups generate more data whereas large groups distribute
    +	 * computation less evenly among tasks.
    +	 *
    +	 * @param groupSize the group size for the quadratic expansion of neighbor pairs
    +	 * @return this
    +	 */
    +	public JaccardIndex<K, VV, EV> setGroupSize(int groupSize) {
    +		Preconditions.checkArgument(groupSize > 0, "Group size must be greater than zero");
    +
    +		this.groupSize = groupSize;
    +
    +		return this;
    +	}
    +
    +	/**
    +	 * Filter out Jaccard Index scores less than the given minimum fraction.
    +	 *
    +	 * @param numerator numerator of the minimum score
    +	 * @param denominator denominator of the minimum score
    +	 * @return this
    +	 * @see #setMaximumScore(int, int)
    +	 */
    +	public JaccardIndex<K, VV, EV> setMinimumScore(int numerator, int denominator)
{
    +		Preconditions.checkArgument(numerator >= 0, "Minimum score numerator must be non-negative");
    +		Preconditions.checkArgument(denominator > 0, "Minimum score denominator must be
greater than zero");
    +		Preconditions.checkArgument(numerator <= denominator, "Minimum score fraction must
be less than or equal to one");
    +
    +		this.unboundedScores = false;
    +		this.minimumScoreNumerator = numerator;
    +		this.minimumScoreDenominator = denominator;
    +
    +		return this;
    +	}
    +
    +	/**
    +	 * Filter out Jaccard Index scores greater than or equal to the given maximum fraction.
    +	 *
    +	 * @param numerator numerator of the maximum score
    +	 * @param denominator denominator of the maximum score
    +	 * @return this
    +	 * @see #setMinimumScore(int, int)
    +	 */
    +	public JaccardIndex<K, VV, EV> setMaximumScore(int numerator, int denominator)
{
    --- End diff --
    
    This one also and all other configuration methods.


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