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From "Robert Hou (JIRA)" <j...@apache.org>
Subject [jira] [Resolved] (DRILL-5443) Managed External Sort fails with OOM while spilling to disk
Date Tue, 12 Sep 2017 02:27:00 GMT

     [ https://issues.apache.org/jira/browse/DRILL-5443?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Robert Hou resolved DRILL-5443.
-------------------------------
    Resolution: Fixed

This has been resolved.

> Managed External Sort fails with OOM while spilling to disk
> -----------------------------------------------------------
>
>                 Key: DRILL-5443
>                 URL: https://issues.apache.org/jira/browse/DRILL-5443
>             Project: Apache Drill
>          Issue Type: Bug
>          Components: Execution - Relational Operators
>    Affects Versions: 1.10.0, 1.11.0
>            Reporter: Rahul Challapalli
>            Assignee: Paul Rogers
>             Fix For: 1.12.0
>
>         Attachments: 265a014b-8cae-30b5-adab-ff030b6c7086.sys.drill, 27016969-ef53-40dc-b582-eea25371fa1c.sys.drill,
drill5443.drillbit.log, drillbit.log
>
>
> git.commit.id.abbrev=3e8b01d
> The below query fails with an OOM
> {code}
> ALTER SESSION SET `exec.sort.disable_managed` = false;
> alter session set `planner.width.max_per_node` = 1;
> alter session set `planner.disable_exchanges` = true;
> alter session set `planner.width.max_per_query` = 1;
> alter session set `planner.memory.max_query_memory_per_node` = 52428800;
> select s1.type type, flatten(s1.rms.rptd) rptds from (select d.type type, d.uid uid,
flatten(d.map.rm) rms from dfs.`/drill/testdata/resource-manager/nested-large.json` d order
by d.uid) s1 order by s1.rms.mapid;
> {code}
> Exception from the logs
> {code}
> 2017-04-24 17:22:59,439 [27016969-ef53-40dc-b582-eea25371fa1c:frag:0:0] INFO  o.a.d.e.p.i.x.m.ExternalSortBatch
- User Error Occurred: External Sort encountered an error while spilling to disk (Unable to
allocate buffer of size 524288 (rounded from 307197) due to memory limit. Current allocation:
25886728)
> org.apache.drill.common.exceptions.UserException: RESOURCE ERROR: External Sort encountered
an error while spilling to disk
> [Error Id: a64e3790-3a34-42c8-b4ea-4cb1df780e63 ]
>         at org.apache.drill.common.exceptions.UserException$Builder.build(UserException.java:544)
~[drill-common-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.doMergeAndSpill(ExternalSortBatch.java:1445)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.mergeAndSpill(ExternalSortBatch.java:1376)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.mergeRuns(ExternalSortBatch.java:1372)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.consolidateBatches(ExternalSortBatch.java:1299)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.mergeSpilledRuns(ExternalSortBatch.java:1195)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.load(ExternalSortBatch.java:689)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.innerNext(ExternalSortBatch.java:559)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:162)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.validate.IteratorValidatorBatchIterator.next(IteratorValidatorBatchIterator.java:215)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:119)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:109)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractSingleRecordBatch.innerNext(AbstractSingleRecordBatch.java:51)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.svremover.RemovingRecordBatch.innerNext(RemovingRecordBatch.java:93)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:162)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.validate.IteratorValidatorBatchIterator.next(IteratorValidatorBatchIterator.java:215)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:119)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:109)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractSingleRecordBatch.innerNext(AbstractSingleRecordBatch.java:51)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.project.ProjectRecordBatch.innerNext(ProjectRecordBatch.java:135)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:162)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.validate.IteratorValidatorBatchIterator.next(IteratorValidatorBatchIterator.java:215)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:119)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:109)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractSingleRecordBatch.innerNext(AbstractSingleRecordBatch.java:51)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.flatten.FlattenRecordBatch.innerNext(FlattenRecordBatch.java:121)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:162)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.validate.IteratorValidatorBatchIterator.next(IteratorValidatorBatchIterator.java:215)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:119)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:109)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.loadBatch(ExternalSortBatch.java:605)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.load(ExternalSortBatch.java:660)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.innerNext(ExternalSortBatch.java:559)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:162)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.validate.IteratorValidatorBatchIterator.next(IteratorValidatorBatchIterator.java:215)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:119)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:109)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractSingleRecordBatch.innerNext(AbstractSingleRecordBatch.java:51)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.svremover.RemovingRecordBatch.innerNext(RemovingRecordBatch.java:93)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:162)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.validate.IteratorValidatorBatchIterator.next(IteratorValidatorBatchIterator.java:215)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:119)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:109)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractSingleRecordBatch.innerNext(AbstractSingleRecordBatch.java:51)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.project.ProjectRecordBatch.innerNext(ProjectRecordBatch.java:135)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:162)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.validate.IteratorValidatorBatchIterator.next(IteratorValidatorBatchIterator.java:215)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.BaseRootExec.next(BaseRootExec.java:104)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.ScreenCreator$ScreenRoot.innerNext(ScreenCreator.java:81)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.BaseRootExec.next(BaseRootExec.java:94)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.work.fragment.FragmentExecutor$1.run(FragmentExecutor.java:234)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.work.fragment.FragmentExecutor$1.run(FragmentExecutor.java:227)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at java.security.AccessController.doPrivileged(Native Method) [na:1.7.0_111]
>         at javax.security.auth.Subject.doAs(Subject.java:415) [na:1.7.0_111]
>         at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1595)
[hadoop-common-2.7.0-mapr-1607.jar:na]
>         at org.apache.drill.exec.work.fragment.FragmentExecutor.run(FragmentExecutor.java:227)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.common.SelfCleaningRunnable.run(SelfCleaningRunnable.java:38)
[drill-common-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
[na:1.7.0_111]
>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
[na:1.7.0_111]
>         at java.lang.Thread.run(Thread.java:745) [na:1.7.0_111]
> Caused by: org.apache.drill.exec.exception.OutOfMemoryException: Unable to allocate buffer
of size 524288 (rounded from 307197) due to memory limit. Current allocation: 25886728
>         at org.apache.drill.exec.memory.BaseAllocator.buffer(BaseAllocator.java:220)
~[drill-memory-base-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.memory.BaseAllocator.buffer(BaseAllocator.java:195)
~[drill-memory-base-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.cache.VectorAccessibleSerializable.readFromStream(VectorAccessibleSerializable.java:113)
~[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.BatchGroup$SpilledRun.getBatch(BatchGroup.java:222)
~[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.BatchGroup$SpilledRun.getNextIndex(BatchGroup.java:196)
~[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.test.generated.PriorityQueueCopierGen6.next(PriorityQueueCopierTemplate.java:77)
~[na:na]
>         at org.apache.drill.exec.physical.impl.xsort.managed.CopierHolder$BatchMerger.next(CopierHolder.java:234)
~[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.doMergeAndSpill(ExternalSortBatch.java:1408)
[drill-java-exec-1.11.0-SNAPSHOT.jar:1.11.0-SNAPSHOT]
>         ... 58 common frames omitted
> {code}
> I attached the log and profile files



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