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From "Tim Wu (JIRA)" <j...@apache.org>
Subject [jira] [Created] (DERBY-5248) Java Process Crash Causes Corrupt DB
Date Thu, 26 May 2011 23:17:47 GMT
Java Process Crash Causes Corrupt DB
------------------------------------

                 Key: DERBY-5248
                 URL: https://issues.apache.org/jira/browse/DERBY-5248
             Project: Derby
          Issue Type: Bug
    Affects Versions: 10.8.1.2
         Environment: Red Hat Enterprise Linux ES release 4 (Nahant Update 7)
java version "1.6.0_01"
Java(TM) SE Runtime Environment (build 1.6.0_01-b06)
Java HotSpot(TM) Server VM (build 1.6.0_01-b06, mixed mode)
Derby 10.8.1.2
            Reporter: Tim Wu
             Fix For: 10.8.1.3


During some crash tests on our product, we hit an issue where after a crash, the derby db
is stuck in a corrupted state. The db fails to boot with the following error when started
up with the debug jar:

org.apache.derby.shared.common.sanity.AssertFailure: ASSERT FAILED incorrect deleted row count.
Should be: 903, instead got: 902, maxSlot = 1255, recordCount = 1255 
at org.apache.derby.shared.common.sanity.SanityManager.THROWASSERT(SanityManager.java:162)

at org.apache.derby.shared.common.sanity.SanityManager.THROWASSERT(SanityManager.java:147)

at org.apache.derby.impl.store.raw.data.BasePage.internalNonDeletedRecordCount(BasePage.java:1432)

at org.apache.derby.impl.store.raw.data.CachedPage.releaseExclusive(CachedPage.java:488) 
at org.apache.derby.impl.store.raw.data.StoredPage.releaseExclusive(StoredPage.java:1066)

at org.apache.derby.impl.store.raw.data.BasePage.unlatch(BasePage.java:1370) 
at org.apache.derby.impl.store.raw.data.PageBasicOperation.releaseResource(PageBasicOperation.java:195)

at org.apache.derby.impl.store.raw.data.PhysicalUndoOperation.releaseResource(PhysicalUndoOperation.java:177)

at org.apache.derby.impl.store.raw.log.FileLogger.undo(FileLogger.java:1055) 
at org.apache.derby.impl.store.raw.xact.Xact.abort(Xact.java:952) 
at org.apache.derby.impl.store.raw.xact.XactFactory.rollbackAllTransactions(XactFactory.java:547)

at org.apache.derby.impl.store.raw.log.LogToFile.recover(LogToFile.java:1229) 
at org.apache.derby.impl.store.raw.RawStore.boot(RawStore.java:339) 
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(BaseMonitor.java:1982) 
at org.apache.derby.impl.services.monitor.TopService.bootModule(TopService.java:334) 
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(BaseMonitor.java:531) 
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Monitor.java:427) 
at org.apache.derby.impl.store.access.RAMAccessManager.boot(RAMAccessManager.java:1019) 
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(BaseMonitor.java:1982) 
at org.apache.derby.impl.services.monitor.TopService.bootModule(TopService.java:334) 
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(BaseMonitor.java:531) 
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Monitor.java:427) 
at org.apache.derby.impl.db.BasicDatabase.bootStore(BasicDatabase.java:749) 
at org.apache.derby.impl.db.BasicDatabase.boot(BasicDatabase.java:177) 
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(BaseMonitor.java:1982) 
at org.apache.derby.impl.services.monitor.TopService.bootModule(TopService.java:334) 
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(BaseMonitor.java:1816) 
at org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(BaseMonitor.java:1682)

at org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(BaseMonitor.java:1560)

at org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(BaseMonitor.java:979)

at org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Monitor.java:550)

at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(EmbedConnection.java:2697) 
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(EmbedConnection.java:385) 
at org.apache.derby.impl.jdbc.EmbedConnection30.<init>(EmbedConnection30.java:73) 
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(EmbedConnection40.java:51) 
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Driver40.java:70) 
at org.apache.derby.jdbc.InternalDriver.connect(InternalDriver.java:248) 
at org.apache.derby.jdbc.AutoloadedDriver.connect(AutoloadedDriver.java:144) 
at java.sql.DriverManager.getConnection(DriverManager.java:582) 
at java.sql.DriverManager.getConnection(DriverManager.java:154) 
at OpenDerby.main(OpenDerby.java:17) 
--------------- 
Stack traces for all live threads: 
Thread name=main id=1 priority=5 state=RUNNABLE isdaemon=false 
java.lang.Thread.dumpThreads(Native Method) 
java.lang.Thread.getAllStackTraces(Thread.java:1554) 
org.apache.derby.shared.common.sanity.ThreadDump.getStackDumpString(ThreadDump.java:34) 
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) 
java.lang.reflect.Method.invoke(Method.java:597) 
org.apache.derby.shared.common.sanity.AssertFailure$1.run(AssertFailure.java:165) 
java.security.AccessController.doPrivileged(Native Method) 
org.apache.derby.shared.common.sanity.AssertFailure.dumpThreads(AssertFailure.java:159) 
org.apache.derby.shared.common.sanity.AssertFailure.<init>(AssertFailure.java:72) 
org.apache.derby.shared.common.sanity.SanityManager.THROWASSERT(SanityManager.java:162) 
org.apache.derby.shared.common.sanity.SanityManager.THROWASSERT(SanityManager.java:147) 
org.apache.derby.impl.store.raw.data.BasePage.internalNonDeletedRecordCount(BasePage.java:1432)

org.apache.derby.impl.store.raw.data.CachedPage.releaseExclusive(CachedPage.java:488) 
org.apache.derby.impl.store.raw.data.StoredPage.releaseExclusive(StoredPage.java:1066) 
org.apache.derby.impl.store.raw.data.BasePage.unlatch(BasePage.java:1370) 
org.apache.derby.impl.store.raw.data.PageBasicOperation.releaseResource(PageBasicOperation.java:195)

org.apache.derby.impl.store.raw.data.PhysicalUndoOperation.releaseResource(PhysicalUndoOperation.java:177)

org.apache.derby.impl.store.raw.log.FileLogger.undo(FileLogger.java:1055) 
org.apache.derby.impl.store.raw.xact.Xact.abort(Xact.java:952) 
org.apache.derby.impl.store.raw.xact.XactFactory.rollbackAllTransactions(XactFactory.java:547)

org.apache.derby.impl.store.raw.log.LogToFile.recover(LogToFile.java:1229) 
org.apache.derby.impl.store.raw.RawStore.boot(RawStore.java:339) 
org.apache.derby.impl.services.monitor.BaseMonitor.boot(BaseMonitor.java:1982) 
org.apache.derby.impl.services.monitor.TopService.bootModule(TopService.java:334) 
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(BaseMonitor.java:531) 
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Monitor.java:427) 
org.apache.derby.impl.store.access.RAMAccessManager.boot(RAMAccessManager.java:1019) 
org.apache.derby.impl.services.monitor.BaseMonitor.boot(BaseMonitor.java:1982) 
org.apache.derby.impl.services.monitor.TopService.bootModule(TopService.java:334) 
org.apache.derby.impl.services.monitor.BaseMonitor.startModule(BaseMonitor.java:531) 
org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Monitor.java:427) 
org.apache.derby.impl.db.BasicDatabase.bootStore(BasicDatabase.java:749) 
org.apache.derby.impl.db.BasicDatabase.boot(BasicDatabase.java:177) 
org.apache.derby.impl.services.monitor.BaseMonitor.boot(BaseMonitor.java:1982) 
org.apache.derby.impl.services.monitor.TopService.bootModule(TopService.java:334) 
org.apache.derby.impl.services.monitor.BaseMonitor.bootService(BaseMonitor.java:1816) 
org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(BaseMonitor.java:1682)

org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(BaseMonitor.java:1560)

org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(BaseMonitor.java:979)

org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Monitor.java:550) 
org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(EmbedConnection.java:2697) 
org.apache.derby.impl.jdbc.EmbedConnection.<init>(EmbedConnection.java:385) 
org.apache.derby.impl.jdbc.EmbedConnection30.<init>(EmbedConnection30.java:73) 
org.apache.derby.impl.jdbc.EmbedConnection40.<init>(EmbedConnection40.java:51) 
org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Driver40.java:70) 
org.apache.derby.jdbc.InternalDriver.connect(InternalDriver.java:248) 
org.apache.derby.jdbc.AutoloadedDriver.connect(AutoloadedDriver.java:144) 
java.sql.DriverManager.getConnection(DriverManager.java:582) 
java.sql.DriverManager.getConnection(DriverManager.java:154) 
OpenDerby.main(OpenDerby.java:17) 

Thread name=derby.rawStoreDaemon id=12 priority=5 state=TIMED_WAITING isdaemon=true 
java.lang.Object.wait(Native Method) 
org.apache.derby.impl.services.daemon.BasicDaemon.rest(BasicDaemon.java:576) 
org.apache.derby.impl.services.daemon.BasicDaemon.run(BasicDaemon.java:390) 
java.lang.Thread.run(Thread.java:680) 

Thread name=Finalizer id=3 priority=8 state=WAITING isdaemon=true 
java.lang.Object.wait(Native Method) 
java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118) 
java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134) 
java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159) 

Thread name=Reference Handler id=2 priority=10 state=WAITING isdaemon=true 
java.lang.Object.wait(Native Method) 
java.lang.Object.wait(Object.java:485) 
java.lang.ref.Reference$ReferenceHandler.run(Reference.java:116) 

Thread name=Signal Dispatcher id=6 priority=9 state=RUNNABLE isdaemon=true 

Thread name=Timer-0 id=10 priority=5 state=WAITING isdaemon=true 
java.lang.Object.wait(Native Method) 
java.lang.Object.wait(Object.java:485) 
java.util.TimerThread.mainLoop(Timer.java:483) 
java.util.TimerThread.run(Timer.java:462) 


--------------- 

Exception in thread "main" java.sql.SQLException: Failed to start database '/Users/tim/Downloads/LinkedBlockingQueueCrashTest/objectdb/datadb'
with class loader sun.misc.Launcher$AppClassLoader@40affc70, see the next exception for details.

at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(SQLExceptionFactory40.java:98)

at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Util.java:142) 
at org.apache.derby.impl.jdbc.Util.seeNextException(Util.java:278) 
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(EmbedConnection.java:2736) 
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(EmbedConnection.java:385) 
at org.apache.derby.impl.jdbc.EmbedConnection30.<init>(EmbedConnection30.java:73) 
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(EmbedConnection40.java:51) 
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Driver40.java:70) 
at org.apache.derby.jdbc.InternalDriver.connect(InternalDriver.java:248) 
at org.apache.derby.jdbc.AutoloadedDriver.connect(AutoloadedDriver.java:144) 
at java.sql.DriverManager.getConnection(DriverManager.java:582) 
at java.sql.DriverManager.getConnection(DriverManager.java:154) 
at OpenDerby.main(OpenDerby.java:17) 
Caused by: java.sql.SQLException: Failed to start database '/Users/tim/Downloads/LinkedBlockingQueueCrashTest/objectdb/datadb'
with class loader sun.misc.Launcher$AppClassLoader@40affc70, see the next exception for details.

at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(SQLExceptionFactory.java:45)

at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(SQLExceptionFactory40.java:122)

at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(SQLExceptionFactory40.java:71)

... 12 more 
Caused by: java.sql.SQLException: Java exception: 'ASSERT FAILED incorrect deleted row count.
Should be: 903, instead got: 902, maxSlot = 1255, recordCount = 1255: org.apache.derby.shared.common.sanity.AssertFailure'.

at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(SQLExceptionFactory.java:45)

at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(SQLExceptionFactory40.java:122)

at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(SQLExceptionFactory40.java:71)

at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Util.java:142) 
at org.apache.derby.impl.jdbc.Util.javaException(Util.java:299) 
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(EmbedConnection.java:2732) 
... 9 more 
Caused by: org.apache.derby.shared.common.sanity.AssertFailure: ASSERT FAILED incorrect deleted
row count. Should be: 903, instead got: 902, maxSlot = 1255, recordCount = 1255 
at org.apache.derby.shared.common.sanity.SanityManager.THROWASSERT(SanityManager.java:162)

at org.apache.derby.shared.common.sanity.SanityManager.THROWASSERT(SanityManager.java:147)

at org.apache.derby.impl.store.raw.data.BasePage.internalNonDeletedRecordCount(BasePage.java:1432)

at org.apache.derby.impl.store.raw.data.CachedPage.releaseExclusive(CachedPage.java:488) 
at org.apache.derby.impl.store.raw.data.StoredPage.releaseExclusive(StoredPage.java:1066)

at org.apache.derby.impl.store.raw.data.BasePage.unlatch(BasePage.java:1370) 
at org.apache.derby.impl.store.raw.data.PageBasicOperation.releaseResource(PageBasicOperation.java:195)

at org.apache.derby.impl.store.raw.data.PhysicalUndoOperation.releaseResource(PhysicalUndoOperation.java:177)

at org.apache.derby.impl.store.raw.log.FileLogger.undo(FileLogger.java:1055) 
at org.apache.derby.impl.store.raw.xact.Xact.abort(Xact.java:952) 
at org.apache.derby.impl.store.raw.xact.XactFactory.rollbackAllTransactions(XactFactory.java:547)

at org.apache.derby.impl.store.raw.log.LogToFile.recover(LogToFile.java:1229) 
at org.apache.derby.impl.store.raw.RawStore.boot(RawStore.java:339) 
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(BaseMonitor.java:1982) 
at org.apache.derby.impl.services.monitor.TopService.bootModule(TopService.java:334) 
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(BaseMonitor.java:531) 
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Monitor.java:427) 
at org.apache.derby.impl.store.access.RAMAccessManager.boot(RAMAccessManager.java:1019) 
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(BaseMonitor.java:1982) 
at org.apache.derby.impl.services.monitor.TopService.bootModule(TopService.java:334) 
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(BaseMonitor.java:531) 
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Monitor.java:427) 
at org.apache.derby.impl.db.BasicDatabase.bootStore(BasicDatabase.java:749) 
at org.apache.derby.impl.db.BasicDatabase.boot(BasicDatabase.java:177) 
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(BaseMonitor.java:1982) 
at org.apache.derby.impl.services.monitor.TopService.bootModule(TopService.java:334) 
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(BaseMonitor.java:1816) 
at org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(BaseMonitor.java:1682)

at org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(BaseMonitor.java:1560)

at org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(BaseMonitor.java:979)

at org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Monitor.java:550)

at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(EmbedConnection.java:2697) 
... 9 more 

It also fails with a slightly different error using the non-debug jar:

Exception in thread "main" java.sql.SQLException: Failed to start database '/Users/tim/Downloads/LinkedBlockingQueueCrashTest/objectdb/datadb'
with class loader sun.misc.Launcher$AppClassLoader@40affc70, see the next exception for details.
	at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
	at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
	at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
	at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
	at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
	at org.apache.derby.impl.jdbc.EmbedConnection30.<init>(Unknown Source)
	at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
	at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
	at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
	at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
	at java.sql.DriverManager.getConnection(DriverManager.java:582)
	at java.sql.DriverManager.getConnection(DriverManager.java:154)
	at OpenDerby.main(OpenDerby.java:16)
Caused by: java.sql.SQLException: Failed to start database '/Users/tim/Downloads/LinkedBlockingQueueCrashTest/objectdb/datadb'
with class loader sun.misc.Launcher$AppClassLoader@40affc70, see the next exception for details.
	at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
	at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown
Source)
	... 13 more
Caused by: java.sql.SQLException: An exception was thrown during transaction abort.
	at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
	at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown
Source)
	at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
	at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)
	... 10 more
Caused by: ERROR XSTB0: An exception was thrown during transaction abort.
	at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
	at org.apache.derby.impl.store.raw.xact.Xact.abort(Unknown Source)
	at org.apache.derby.impl.store.raw.xact.XactFactory.rollbackAllTransactions(Unknown Source)
	at org.apache.derby.impl.store.raw.log.LogToFile.recover(Unknown Source)
	at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
	at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
	at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
	at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
	at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
	at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
	at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown
Source)
	at org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown Source)
	at org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown Source)
	... 10 more
Caused by: ERROR XSLA8: Cannot rollback transaction 10946, trying to compensate null operation
with null
	at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
	at org.apache.derby.impl.store.raw.log.FileLogger.undo(Unknown Source)
	... 32 more
Caused by: ERROR XSLA1: Log Record has been sent to the stream, but it cannot be applied to
the store (Object null).  This may cause recovery problems also.
	at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
	at org.apache.derby.impl.store.raw.log.FileLogger.logAndUndo(Unknown Source)
	at org.apache.derby.impl.store.raw.xact.Xact.logAndUndo(Unknown Source)
	... 33 more
Caused by: ERROR XSDB0: Unexpected exception on in-memory page Page(1,Container(0, 1409))
	at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
	at org.apache.derby.impl.store.raw.data.StoredPage.storeRecordForInsert(Unknown Source)
	at org.apache.derby.impl.store.raw.data.StoredPage.storeRecord(Unknown Source)
	at org.apache.derby.impl.store.raw.data.PurgeOperation.undoMe(Unknown Source)
	at org.apache.derby.impl.store.raw.data.PhysicalUndoOperation.doMe(Unknown Source)
	... 35 more

I have the zipped up db that causes the problem. Will attach it to this bug report.
 

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