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From Bandeep Singh <bsi...@phemi.com>
Subject Re: Trouble loading AE
Date Tue, 27 Sep 2016 20:21:53 GMT
If you are trying to run the AggregatePlaintextFastUMLSProcessor.xml as
described by the User guide , my best guess is that you are missing the
folder */apache-ctakes-3.2.2/resources/org/apache/ctakes/dictionary/fast *



On Tue, Sep 27, 2016 at 1:09 PM, Bandeep Singh <bsingh@phemi.com> wrote:

> Can you share the complete stack trace (error logs). And may be we will
> know what is going on.
>
>
> On Tue, Sep 27, 2016 at 12:47 PM, Gianfrancesco, Milena <
> Milena.Gianfrancesco@ucsf.edu> wrote:
>
>> Thanks, yes, so I am getting this error message in response to loading
>> the AE even though resources have been downloaded as specified in the User
>> Manuel. Any other thoughts as to why this may be occurring? Do any of the
>> files within the resources folder need to be modified before loading?
>>
>>
>> From: Bandeep Singh <bsingh@phemi.com>
>> Reply-To: "user@ctakes.apache.org" <user@ctakes.apache.org>
>> Date: Tuesday, September 27, 2016 at 11:55 AM
>>
>> To: "user@ctakes.apache.org" <user@ctakes.apache.org>
>> Subject: Re: Trouble loading AE
>>
>> Hi Milena,
>>
>> I am referring to the same resources mentioned in the User Install Guide
>> doc.
>>
>>
>> -Bandeep
>>
>> On Tue, Sep 27, 2016 at 11:05 AM, Gianfrancesco, Milena <
>> Milena.Gianfrancesco@ucsf.edu> wrote:
>>
>>> Hi Bandeep,
>>>
>>> I downloaded resources as instructed in the User Install Guide and
>>> copied them into the resources folder. Is that what you are referring to?
>>> Or it there another set of UMLS resources to be downloaded? There didn’t
>>> appear to be so in the link.
>>>
>>> Thanks
>>>
>>> From: Bandeep Singh <bsingh@phemi.com>
>>> Reply-To: "user@ctakes.apache.org" <user@ctakes.apache.org>
>>> Date: Wednesday, September 21, 2016 at 3:54 PM
>>> To: "user@ctakes.apache.org" <user@ctakes.apache.org>
>>>
>>> Subject: Re: Trouble loading AE
>>>
>>> Hi,
>>> Glad that it worked !
>>>
>>> I think resources are missing in your cTakes installation.
>>> Did you download the UMLS resources separately from
>>> https://sourceforge.net/projects/ctakesresources/files/?source=navbar
>>> And You have to put these resources under
>>> *org/apache/ctakes/dictionary/*
>>>
>>> Hope that Helps !
>>>
>>> Bandeep
>>>
>>> On Wed, Sep 21, 2016 at 3:45 PM, Gianfrancesco, Milena <
>>> Milena.Gianfrancesco@ucsf.edu> wrote:
>>>
>>>> Thanks, Bandeep. That seems to have solved that issue, but now when I
>>>> try to load AE I get an error message popup that states:
>>>> "org.apache.uima.resource.ResourceInitializationException". I'm not
>>>> sure what this means? It only happens when I try to load the AEs that
>>>> utilize UMLS.
>>>>
>>>> Thanks in advance.
>>>>
>>>>
>>>>
>>>> ------------------------------
>>>> *From:* Bandeep Singh [bsingh@phemi.com]
>>>> *Sent:* Tuesday, September 13, 2016 5:24 PM
>>>> *To:* user@ctakes.apache.org
>>>> *Subject:* Re: Trouble loading AE
>>>>
>>>> Hi Milena,
>>>>
>>>> It looks like a classic example of Java version mismatch. One of the
>>>> dependencies of cTakes is Java 8
>>>> Please make sure you have JAVA SDK installed and not JRE. I have
>>>> OpenJDK 8 running on my system and cTakes runs fine on my system.
>>>>
>>>>  -Bandeep
>>>>
>>>> On Tue, Sep 13, 2016 at 2:32 PM, Gianfrancesco, Milena <
>>>> Milena.Gianfrancesco@ucsf.edu> wrote:
>>>>
>>>>> Hello,
>>>>>
>>>>> I have just installed cTakes and followed instructions in the 3.2 User
>>>>> Install Guide. However, I am unable to load an AE. I have a UMLS user
name
>>>>> and password, and have updated the appropriate scripts as outlined in
the
>>>>> User Guide, yet I get this error when trying to load any AE (even the
>>>>> non-UMLS ones):
>>>>>
>>>>> Exception in thread "AWT-EventQueue-0" java.lang.UnsupportedClassVersionError:
>>>>> org/apache/ctakes/dependency/parser/ae/ClearNLPDependencyParserAE :
>>>>> Unsupported major.minor version 51.0
>>>>>
>>>>> at java.lang.ClassLoader.defineClass1(Native Method)
>>>>>
>>>>> at java.lang.ClassLoader.defineClassCond(ClassLoader.java:637)
>>>>>
>>>>> at java.lang.ClassLoader.defineClass(ClassLoader.java:621)
>>>>>
>>>>> at java.security.SecureClassLoader.defineClass(SecureClassLoade
>>>>> r.java:141)
>>>>>
>>>>> at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
>>>>>
>>>>> at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
>>>>>
>>>>> at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
>>>>>
>>>>> at java.security.AccessController.doPrivileged(Native Method)
>>>>>
>>>>> at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
>>>>>               …… + more
>>>>>
>>>>>  I have double checked that I have the latest Java software. Any idea
>>>>> what could be causing this error?
>>>>>
>>>>> Thank you!
>>>>>
>>>>> Milena
>>>>>
>>>>
>>>>
>>>
>>
>

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