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From Bandeep Singh <bsi...@phemi.com>
Subject Re: cTakes not parsing every text with SNOMED-CT
Date Mon, 29 Aug 2016 20:28:16 GMT
Thanks for the reply savova.
I tried changing the lookup window in *LookupDesc.xml *(under
*resources/org/apache/ctakes/dictionary/lookup*) but could not get it to
work.
Is there any other config file i need a make a change to reflect the
updates.

Thanks,
Bandeep

On Mon, Aug 29, 2016 at 1:07 PM, Savova, Guergana <
Guergana.Savova@childrens.harvard.edu> wrote:

> You’d probably need to define the lookup window to include the verb
> part-of-speech tags (they all start with a v*). The default window lookup
> anchors around the n* phrases (noun phrases which are sequences of
> part-of-speech tags). You have to modify the lookup setting.
>
> Hope this helps.
>
> --Guergana
>
>
>
> Guergana Savova, PhD, FACMI
>
> Associate Professor
>
> PI Natural Language Processing Lab
>
> Boston Children's Hospital and Harvard Medical School
>
> 300 Longwood Avenue
>
> Mailstop: BCH3092
>
> Enders 144.1
>
> Boston, MA 02115
>
> Harvard Scholar: http://scholar.harvard.edu/guergana_k_savova/biocv
>
>
>
> *From:* Bandeep Singh [mailto:bsingh@phemi.com]
> *Sent:* Monday, August 29, 2016 1:21 PM
> *To:* user@ctakes.apache.org
> *Subject:* cTakes not parsing every text with SNOMED-CT
>
>
>
> Hi,
>
>
>
> I have been trying to parse a sample text using cTakes. However, cTakes
> does not annotate few words with its UMLS/SNOEMED CT equivalent code.
>
>
>
> Sample text: " The patient is suffering from extreme pain due to shark
> bite"
>
>
>
> *cTakes output: *
>
> [image: Inline image 1]
>
>
>
> If we observer in the above example, word "suffering" is not annotated
> with SNOWMED-CT equivalent code *706873003.*
>
>
>
> Can somebody explain why ? Is there any other customized SNOWMED/UMLS
> dictionary I can use to annotate everything ?
>
>
>

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