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From vijay garla <vnga...@gmail.com>
Subject Re: Achieving YTEX negation in CuisOnlyPlaintextUMLSProcessor
Date Mon, 04 Jan 2016 11:27:36 GMT
CTAKES_HOME\desc\ctakes-ytex-uima\desc\analysis_engine\DictionaryLookupAnnotator.xml
references
CTAKES_HOME\resources\org\apache\ctakes\ytex\dictionary\lookup\LookupDesc_SNOMED.xml,
which limits all dictionary lookups
to org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation spans,
which are created by the LookupWindowAnnotator.

You can either add the LookupWindowAnnotator (not sure about its
dependencies), or you can change LookupDesc_SNOMED.xml to use a different
annotation (e.g. Noun Phrase or Sentence).

HTH,

VJ

On Thu, Dec 31, 2015 at 3:52 PM, Jessica Glover <glover.jessica.m@gmail.com>
wrote:

> I have noticed that using the AggregatePlaintextUMLSProcessor in
> ctakes-ytex-uima results in improved negation detection over the one in
> ctakes-clinical-pipeline on my test documents.
>
> I would like to get the same improvement in
> CuisOnlyPlaintextUMLSProcessor. I have tried replacing the
> DictionaryLookupAnnotator, which seemed to be the determining factor in
> AggregatePlaintextUMLSProcessor, but when I run it, I find no
> IdentifiedAnnotations. Does the YTEX DictionaryLookupAnnotator depend on an
> analysis engine I've overlooked? Any other suggestions?
>
> Thank you,
> Jessica G.
>

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