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From Graham Pitson <gpit...@alphalink.com.au>
Subject Re: New user question on use of side effect component
Date Tue, 15 Dec 2015 10:32:09 GMT

Thanks for the info - it has been very helpful.

I've got things running now under CVD. Unfortunately the same pipeline 
errors on the CPE with a 'URI is not hierarchical'. I've decided to come 
back to that error later as I assume it is some difference in 
configuration between the two applications. I'm only running these as 
applications under windows 10.

Does the order of the SideEffectAnnotator matter in the pipeline?


On 15/12/2015 1:04 PM, Pei Chen wrote:
> Graham,
> The SideAffect descriptor looks like it's out of date.
> What I would do if I were you is use the default CPE and default
> aggregate from the clinical pipeline project and just add the
> SideAffectAnnotator into your pipeline. (instead of using the
> SideAffectAggregateTAE.xml)
> <delegateAnalysisEngine key="SideEffectAnnotator">
> <import location="SideEffectAnnotator.xml"/>
> </delegateAnalysisEngine>
> ....
> <node>SideEffectAnnotator</node>
> I think it's better to actually remove these example aggregate.xml's
> from individual projects as it is confusing and a pain to maintain.
> If anything, just have uimaFIT dynamically generate these at build
> time..  Just my 2 cents.

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