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From "Mattmann, Chris A (3980)" <chris.a.mattm...@jpl.nasa.gov>
Subject Re: How to use cTAKES from the command line?
Date Tue, 06 Oct 2015 20:36:06 GMT
Also, of note, Tika now has support for doing this, either from
cURL (Tika-Server) or the command line (Tika-app):

http://wiki.apache.org/tika/cTAKESParser

++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Chris Mattmann, Ph.D.
Chief Architect
Instrument Software and Science Data Systems Section (398)
NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
Office: 168-519, Mailstop: 168-527
Email: chris.a.mattmann@nasa.gov
WWW:  http://sunset.usc.edu/~mattmann/
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Adjunct Associate Professor, Computer Science Department
University of Southern California, Los Angeles, CA 90089 USA
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++





-----Original Message-----
From: Pei Chen <chenpei@apache.org>
Reply-To: "user@ctakes.apache.org" <user@ctakes.apache.org>
Date: Tuesday, October 6, 2015 at 1:21 PM
To: "user@ctakes.apache.org" <user@ctakes.apache.org>
Subject: Re: How to use cTAKES from the command line?

>Hi Franck,
>There was a similar questions on this topic:
>In particular, you can run CPE directly from the command line w/o the UI.
>
>Check out:
>http://mail-archives.apache.org/mod_mbox/ctakes-dev/201505.mbox/%3CCAOsyzK
>3jxpktW5esFnhm2doCv_4JiQpuqQgAOer6wv9FsNAm4Q@mail.gmail.com%3E
>
>On Sun, Oct 4, 2015 at 3:00 PM, Franck Dernoncourt
><franck.dernoncourt@gmail.com> wrote:
>> Hi,
>>
>> I wonder how to use cTAKES from the command line.
>>
>> E.g. :
>>  - I have a file note.txt that contains some text like "Patient had
>>elevated
>> blood sugar but tests confirm no diabetes.  Patient's father had adult
>>onset
>> diabetes."
>>  - I want to use the provided analysis engine
>> 
>>"\apache-ctakes-3.2.2-bin\apache-ctakes-3.2.2\desc\ctakes-clinical-pipeli
>>ne\desc\analysis_engine\AggregatePlaintextUMLSProcessor.xml"
>>
>> How can I get the analyse engine's output (viz. the annotations) using
>>the
>> command line (i.e. without using graphical user interfaces such as UIMA
>>CAS
>> Visual Debugger or the Collection Processing Engine)? I'd prefer to use
>>to
>> use the provided JAR files rather than having to compile the code.
>>
>> The question is fairly simple but I couldn't find the information in
>> cTAKES's README (https://svn.apache.org/repos/asf/ctakes/trunk/README)
>>or on
>> Confluence 
>>(https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0).
>>
>> Thanks,
>> Franck
>>
>>
>> ----
>> Franck Dernoncourt
>> francky@mit.edu
>> http://francky.me
>>
>>
>>

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