ctakes-user mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From Justin Zhang <justinzhang...@gmail.com>
Subject Re: corresponding versions ctakes and stakes-resource
Date Wed, 15 Jul 2015 15:24:47 GMT
Which Eclipse package did you use?

  Mars Packages <https://eclipse.org/downloads/packages/release/Mars/R>
  Luna Packages <https://eclipse.org/downloads/packages/release/Luna/SR2>
  Kepler Packages
<https://eclipse.org/downloads/packages/release/Kepler/SR2>
  Juno Packages <https://eclipse.org/downloads/packages/release/Juno/SR2>
  Indigo Packages
<https://eclipse.org/downloads/packages/release/Indigo/SR2>
  Helios Packages
<https://eclipse.org/downloads/packages/release/Helios/SR2>
  Galileo Packages
<https://eclipse.org/downloads/packages/release/Galileo/SR2>
  Ganymede Packages
<https://eclipse.org/downloads/packages/release/Ganymede/SR2>
  Europa Packages
<https://eclipse.org/downloads/packages/release/Europa/WINTER>
  All Releases <https://eclipse.org/downloads/packages/all>



On Wed, Jul 15, 2015 at 9:36 AM, Akhilesh Patel <
akhilesh.patel@citiustech.com> wrote:

> Yes I ran using source code as well as using cvd provided by them
>
>
> Sent from Samsung Mobile
>
>
> -------- Original message --------
> From: Justin Zhang
> Date:15/07/2015 8:02 PM (GMT+05:30)
> To: user@ctakes.apache.org
> Subject: Re: corresponding versions ctakes and stakes-resource
>
> Did you run from source code?
> Any successful experience with binary ctakes?
>
>
> On Wed, Jul 15, 2015 at 9:27 AM, Akhilesh Patel <
> akhilesh.patel@citiustech.com> wrote:
>
>> You can download it from their svn repository. Please use following url
>> to get latest version
>>
>> http://ctakes.apache.org/downloads.cgi
>>
>> Sent from Samsung Mobile
>>
>>
>> -------- Original message --------
>> From: Justin Zhang
>> Date:15/07/2015 7:45 PM (GMT+05:30)
>> To: user@ctakes.apache.org
>> Subject: Re: corresponding versions ctakes and stakes-resource
>>
>> Hello Akhilesh,
>>
>> Thank you for quick response.
>>
>> What is the link to download 3.2.2-SNAPSHOT? and What version of ctakes
>> resource did you use?
>>
>>
>> Is it different from
>> https://www.apache.org/dist/ctakes/ctakes-3.2.2/apache-ctakes-3.2.2-bin.tar.gz
>> ?
>>
>> I tried this one and with ctakes resource 3.2.1.1. It did not for these 3
>> pipelines.
>>
>> Justin
>>
>>
>> On Wed, Jul 15, 2015 at 9:03 AM, Akhilesh Patel <
>> akhilesh.patel@citiustech.com> wrote:
>>
>>> Hi Justin,
>>>
>>>
>>>
>>> I have not worked on smoking status however  I am able to capture “Side
>>> effects” and “Drug annotation” information from clinical notes. Both the
>>> module working form me.
>>>
>>> I am using following xml files to extract the information
>>>
>>>
>>>
>>>        <delegateAnalysisEngine key=*"DrugMentionAnnotator"*>
>>>
>>>          <import location=
>>> *"../../ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml"*
>>> />
>>>
>>>        </delegateAnalysisEngine>
>>>
>>>
>>>
>>> <delegateAnalysisEngine key=*"SideEffect"*>
>>>
>>> <import location=
>>> *"../../ctakes/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml"*
>>> />
>>>
>>> </delegateAnalysisEngine>
>>>
>>>
>>>
>>> Ctakes version I am using is 3.2.2-SNAPSHOT.
>>>
>>>
>>>
>>> Thanks,
>>>
>>> Akhilesh
>>>
>>>
>>>
>>> *From:* Justin Zhang [mailto:justinzhang.xl@gmail.com]
>>> *Sent:* Wednesday, July 15, 2015 7:22 PM
>>> *To:* user@ctakes.apache.org
>>> *Subject:* Re: corresponding versions ctakes and stakes-resource
>>>
>>>
>>>
>>> Hello again,
>>>
>>> For the same purpose as the first email: I have put a lot of efforts in
>>> order to run this few pipelines with different versions ctakes/resources
>>> and different computer systems, and did not succeed. Most errors are "URIs"
>>> or "File (xml) not found".
>>>
>>> I am so eager to move forward. Could anyone help me through the steps
>>> for "Smoking Status", and then "Side effects"/"Drug Annotations"? I would
>>> need the information of specific ctakes binary version and correct match
>>> resources, and relevant necessary steps.
>>>
>>> Great appreciation!!!
>>>
>>> Justin
>>>
>>>
>>>
>>> On Tue, Jul 14, 2015 at 4:04 PM, Justin Zhang <justinzhang.xl@gmail.com>
>>> wrote:
>>>
>>> Hello Everyone,
>>>
>>>
>>>
>>> I am looking to load following AE (analysis engine) from runctakesCVD.sh
>>>
>>>
>>>
>>> ·  <cTAKES_HOME>/desc/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml
>>> (The annotator to obtain document or patient-level smoking status)
>>>
>>> ·  <cTAKES_HOME>/desc/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml
>>> (The annotator to find side effect mentions and sentences from clinical
>>> documents)
>>>
>>> ·  <cTAKES_HOME>/desc/ctakes-drug-ner/desc/analysis_engine/DrugAggregatePlaintextUMLSProcesor.xml
>>> (The annotator to obtain drug annotations)
>>>
>>>
>>>
>>> What corresponding ctakes binary and ctakes resource should I use?
>>>
>>>
>>>
>>> In download page, current resource versions are 3.0.1, 3.10, 3.13,
>>> 3.2.0, 3.2.1.1
>>>
>>>
>>>
>>> current ctakes versions are 3.1.0, 3.1.1, 3.2.0, 3.2.1, 3.2.2
>>>
>>>
>>>
>>> thanks,
>>>
>>>
>>>
>>> --
>>>
>>> Justin
>>>
>>>
>>>
>>>
>>> --
>>>
>>> Justin
>>> ===========================================================================================================================================================================================
>>> DISCLAIMER: The information contained in this message (including any
>>> attachments) is confidential and may be privileged. If you have received it
>>> by mistake please notify the sender by return e-mail and permanently delete
>>> this message and any attachments from your system. Any dissemination, use,
>>> review, distribution, printing or copying of this message in whole or in
>>> part is strictly prohibited. Please note that e-mails are susceptible to
>>> change. CitiusTech shall not be liable for the improper or incomplete
>>> transmission of the information contained in this communication nor for any
>>> delay in its receipt or damage to your system. CitiusTech does not
>>> guarantee that the integrity of this communication has been maintained or
>>> that this communication is free of viruses, interceptions or interferences.
>>> ====================================================================================================================================================================
>>>
>>>
>>
>>
>>
>> --
>> Justin
>>
>> ===========================================================================================================================================================================================
>> DISCLAIMER: The information contained in this message (including any
>> attachments) is confidential and may be privileged. If you have received it
>> by mistake please notify the sender by return e-mail and permanently delete
>> this message and any attachments from your system. Any dissemination, use,
>> review, distribution, printing or copying of this message in whole or in
>> part is strictly prohibited. Please note that e-mails are susceptible to
>> change. CitiusTech shall not be liable for the improper or incomplete
>> transmission of the information contained in this communication nor for any
>> delay in its receipt or damage to your system. CitiusTech does not
>> guarantee that the integrity of this communication has been maintained or
>> that this communication is free of viruses, interceptions or interferences.
>> ====================================================================================================================================================================
>>
>>
>
>
>
> --
> Justin
>
> ===========================================================================================================================================================================================
> DISCLAIMER: The information contained in this message (including any
> attachments) is confidential and may be privileged. If you have received it
> by mistake please notify the sender by return e-mail and permanently delete
> this message and any attachments from your system. Any dissemination, use,
> review, distribution, printing or copying of this message in whole or in
> part is strictly prohibited. Please note that e-mails are susceptible to
> change. CitiusTech shall not be liable for the improper or incomplete
> transmission of the information contained in this communication nor for any
> delay in its receipt or damage to your system. CitiusTech does not
> guarantee that the integrity of this communication has been maintained or
> that this communication is free of viruses, interceptions or interferences.
> ====================================================================================================================================================================
>
>



-- 
Justin

Mime
View raw message