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From Justin Zhang <justinzhang...@gmail.com>
Subject Re: corresponding versions ctakes and stakes-resource
Date Wed, 15 Jul 2015 14:32:22 GMT
Did you run from source code?
Any successful experience with binary ctakes?


On Wed, Jul 15, 2015 at 9:27 AM, Akhilesh Patel <
akhilesh.patel@citiustech.com> wrote:

> You can download it from their svn repository. Please use following url to
> get latest version
>
> http://ctakes.apache.org/downloads.cgi
>
> Sent from Samsung Mobile
>
>
> -------- Original message --------
> From: Justin Zhang
> Date:15/07/2015 7:45 PM (GMT+05:30)
> To: user@ctakes.apache.org
> Subject: Re: corresponding versions ctakes and stakes-resource
>
> Hello Akhilesh,
>
> Thank you for quick response.
>
> What is the link to download 3.2.2-SNAPSHOT? and What version of ctakes
> resource did you use?
>
>
> Is it different from
> https://www.apache.org/dist/ctakes/ctakes-3.2.2/apache-ctakes-3.2.2-bin.tar.gz
> ?
>
> I tried this one and with ctakes resource 3.2.1.1. It did not for these 3
> pipelines.
>
> Justin
>
>
> On Wed, Jul 15, 2015 at 9:03 AM, Akhilesh Patel <
> akhilesh.patel@citiustech.com> wrote:
>
>> Hi Justin,
>>
>>
>>
>> I have not worked on smoking status however  I am able to capture “Side
>> effects” and “Drug annotation” information from clinical notes. Both the
>> module working form me.
>>
>> I am using following xml files to extract the information
>>
>>
>>
>>        <delegateAnalysisEngine key=*"DrugMentionAnnotator"*>
>>
>>          <import location=
>> *"../../ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml"*
>> />
>>
>>        </delegateAnalysisEngine>
>>
>>
>>
>> <delegateAnalysisEngine key=*"SideEffect"*>
>>
>> <import location=
>> *"../../ctakes/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml"*
>> />
>>
>> </delegateAnalysisEngine>
>>
>>
>>
>> Ctakes version I am using is 3.2.2-SNAPSHOT.
>>
>>
>>
>> Thanks,
>>
>> Akhilesh
>>
>>
>>
>> *From:* Justin Zhang [mailto:justinzhang.xl@gmail.com]
>> *Sent:* Wednesday, July 15, 2015 7:22 PM
>> *To:* user@ctakes.apache.org
>> *Subject:* Re: corresponding versions ctakes and stakes-resource
>>
>>
>>
>> Hello again,
>>
>> For the same purpose as the first email: I have put a lot of efforts in
>> order to run this few pipelines with different versions ctakes/resources
>> and different computer systems, and did not succeed. Most errors are "URIs"
>> or "File (xml) not found".
>>
>> I am so eager to move forward. Could anyone help me through the steps for
>> "Smoking Status", and then "Side effects"/"Drug Annotations"? I would need
>> the information of specific ctakes binary version and correct match
>> resources, and relevant necessary steps.
>>
>> Great appreciation!!!
>>
>> Justin
>>
>>
>>
>> On Tue, Jul 14, 2015 at 4:04 PM, Justin Zhang <justinzhang.xl@gmail.com>
>> wrote:
>>
>> Hello Everyone,
>>
>>
>>
>> I am looking to load following AE (analysis engine) from runctakesCVD.sh
>>
>>
>>
>> ·  <cTAKES_HOME>/desc/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml
>> (The annotator to obtain document or patient-level smoking status)
>>
>> ·  <cTAKES_HOME>/desc/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml
>> (The annotator to find side effect mentions and sentences from clinical
>> documents)
>>
>> ·  <cTAKES_HOME>/desc/ctakes-drug-ner/desc/analysis_engine/DrugAggregatePlaintextUMLSProcesor.xml
>> (The annotator to obtain drug annotations)
>>
>>
>>
>> What corresponding ctakes binary and ctakes resource should I use?
>>
>>
>>
>> In download page, current resource versions are 3.0.1, 3.10, 3.13, 3.2.0,
>> 3.2.1.1
>>
>>
>>
>> current ctakes versions are 3.1.0, 3.1.1, 3.2.0, 3.2.1, 3.2.2
>>
>>
>>
>> thanks,
>>
>>
>>
>> --
>>
>> Justin
>>
>>
>>
>>
>> --
>>
>> Justin
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>>
>
>
>
> --
> Justin
>
> ===========================================================================================================================================================================================
> DISCLAIMER: The information contained in this message (including any
> attachments) is confidential and may be privileged. If you have received it
> by mistake please notify the sender by return e-mail and permanently delete
> this message and any attachments from your system. Any dissemination, use,
> review, distribution, printing or copying of this message in whole or in
> part is strictly prohibited. Please note that e-mails are susceptible to
> change. CitiusTech shall not be liable for the improper or incomplete
> transmission of the information contained in this communication nor for any
> delay in its receipt or damage to your system. CitiusTech does not
> guarantee that the integrity of this communication has been maintained or
> that this communication is free of viruses, interceptions or interferences.
> ====================================================================================================================================================================
>
>



-- 
Justin

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