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From Bruce Tietjen <bruce.tiet...@perfectsearchcorp.com>
Subject Re: Running cTAKES through Java
Date Thu, 25 Jun 2015 14:52:23 GMT
I'm not familiar with your configuration, but I think you should be able to
set your class paths appropriately so the unbundled resources can be found
by cTakes.

I would also be interested in hearing from the community if there is any
other easy way to tell cTakes where to find the resources.



On Thu, Jun 25, 2015 at 8:18 AM, Jeff Headley <jeffunf96@gmail.com> wrote:

> Thanks Bruce, that’s probably my problem. I’m referencing the cTAKES
> dependencies in my pom and spring boot makes 1 big fat jar file. Is there
> some setting I can override somewhere on cTAKES to tell it to go look in an
> external folder for the dictionary? I tried not bundling cTAKES and
> attempting to reference my cTAKES installation but I kept getting error
> messages from other cTAKES components about “URI is not hierarchical”.
>
> On Jun 25, 2015, at 10:10 AM, Bruce Tietjen <
> bruce.tietjen@perfectsearchcorp.com> wrote:
>
> Jeff,
>
> If your process is working except that it takes 14 minutes, then I suggest
> that you check to see if cTakes is reading the lookup dictionary files
> from .jar files.
>
> cTakes can run with the dictionary resources in .jar files, but it will be
> very slow.
>
>
>  [image: IMAT Solutions] <http://imatsolutions.com/>
>  Bruce Tietjen
> Senior Software Engineer
> [image: Mobile:] 801.634.1547
> bruce.tietjen@imatsolutions.com
>
> On Thu, Jun 25, 2015 at 7:56 AM, Jeff Headley <jeffunf96@gmail.com> wrote:
>
>> I can tell you what I am trying to do, but that is only with limited
>> success. I am very new to cTAKES. I just put together a simple Spring Boot
>> app and defined the ctakes dependencies in the pom.xml.  Then I pass in a
>> filename on the command line to the app and open it and pass the text on to
>> cTAKES. I’m doing something wrong somewhere though because it takes 14
>> minutes to process the tiny 1-line text file (sits on one of the UMLS
>> annotators for a long time as I recall) whereas I can put the same text in
>> the CVD and get results back immediately.
>>
>> On Jun 25, 2015, at 6:19 AM, Sai Anuroop <sai.anuroop@abzooba.com> wrote:
>>
>> Hi All,
>>  @Lance,Jeff:Thanks a lot for your posts.Basically I want to run cTAKES
>> in background by choosing File Collection Reader,AE and CAS Consumer using
>> java code and produce XML output.Presently I have installed the developer
>> version of cTAKES,So can you please tell me where to write above java code
>> and how to run it.
>>
>> Regards,
>> Vetsa Sai Anuroop
>>
>>
>>
>
>

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