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From Weiwei Zhang <wzhan...@dons.usfca.edu>
Subject CPE Plaintext Processor Error
Date Thu, 05 Feb 2015 22:42:21 GMT
Hi there,

I was trying to use the test_plaintext.xml in the CPE descriptor to parse
plain texts and I have replaced the "AggregatePlaintextProcessor.xml" with
"AggregatedPlaintextUMLSProcessor.xml" in the test_plaintext.xml. However,
I got the following error and hope you guys can point me to the right
direction to resolve this issue. Thank you.

[image: Inline image 3]

I also pasted the message on the console here:

org.apache.uima.resource.ResourceInitializationException: Initialization of
CAS Processor with name "AggregatePlaintextUMLSProcessor" failed.

at
org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:83)

at
org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingEngine(UIMAFramework_impl.java:420)

at
org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAFramework.java:864)

at org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)

at org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)

at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)

Caused by: org.apache.uima.resource.ResourceConfigurationException:
Initialization of CAS Processor with name "AggregatePlaintextUMLSProcessor"
failed.

at
org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1104)

at
org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProcessors(CPEFactory.java:550)

at
org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java:253)

at
org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.java:127)

at
org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:75)

... 5 more

Caused by: org.apache.uima.resource.ResourceInitializationException

at
org.apache.ctakes.core.resource.JdbcConnectionResourceImpl.load(JdbcConnectionResourceImpl.java:130)

at
org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:603)

at
org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalResources(ResourceManager_impl.java:442)

at
org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBase.java:153)

at
org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize(AnalysisEngineImplBase.java:157)

at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:123)

at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)

at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)

at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)

at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)

at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)

at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)

at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)

at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)

at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)

at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)

at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)

at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)

at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425)

at
org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1088)

... 9 more

Caused by: java.sql.SQLException: File input/output error:
java.io.IOException: Stream closed

at org.hsqldb.jdbc.Util.sqlException(Unknown Source)

at org.hsqldb.jdbc.jdbcConnection.<init>(Unknown Source)

at org.hsqldb.jdbcDriver.getConnection(Unknown Source)

at org.hsqldb.jdbcDriver.connect(Unknown Source)

at java.sql.DriverManager.getConnection(DriverManager.java:664)

at java.sql.DriverManager.getConnection(DriverManager.java:247)

at
org.apache.ctakes.core.resource.JdbcConnectionResourceImpl.load(JdbcConnectionResourceImpl.java:109)

... 28 more



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